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  • 1985-1989  (596)
  • 1987  (596)
  • Computational Chemistry and Molecular Modeling  (406)
  • Genetics  (99)
  • Physical Chemistry
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  • 1985-1989  (596)
Year
  • 1
    ISSN: 1432-1440
    Keywords: Blood Pressure ; Hypertension ; Salt ; Sodium ; Genetics ; Twin Model ; Salt Restriction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary To examine the effect of genetic variance on blood pressure, sodium homeostasis, and its regulatory determinants, we studied 37 pairs of monozygotic twins and 18 pairs of dizygotic twins under conditions of volume expansion and contraction. We found that, in addition to blood pressure and body size, sodium excretion in response to provocative maneuvers, glomerular filtration rate, the renin-angiotensin system, and the sympathetic nervous system are influenced by genetic variance. To elucidate the interaction of genetic factors and an environmental influence, namely, salt intake, we restricted dietary sodium in 44 families of twin children. In addition to a modest decrease in blood pressure, we found heterogeneous responses in blood pressure indicative of sodium sensitivity and resistance which were normally distributed. Strong parent-offspring resemblances were found in baseline blood pressures which persisted when adjustments were made for age and weight. Further, mother-offspring resemblances were observed in the change in blood pressure with sodium restriction. We conclude that the control of sodium homeostasis is heritable and that the change in blood pressure with sodium restriction is familial as well. These data speak to the interaction between the genetic susceptibility to hypertension and environmental influences which may result in its expression.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Pediatric nephrology 1 (1987), S. 69-75 
    ISSN: 1432-198X
    Keywords: Blood pressure ; Essential hypertension ; Genetics ; Epidemiology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract This paper presents a review of the genetic transmission of normal blood pressure and of essential hypertension. Familial aggregation of normal blood pressure has been reported in adults, in children and even in newborns. Blood pressure aggregation phenomenon, however, is the result of both a genetic component and shared environmental factors. More specific for each etiological factor were the studies of blood pressure aggregation in twins and in adopted children. Attention was focused on the Montreal Adoption Study. In essential hypertension, a Japanese study is reviewed showing the occurrence of hypertension in the offspring of hypertensive parents. The heterogeneity of essential hypertension is underlined and two of the multiple etiological factors are particularly considered for their genetic component: the response to salt intake and erythrocyte cation fluxes. The conclusion from the literature reviewed is that essential hypertension is a polygenic disease transmitted by polygenic systems.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Pediatric nephrology 1 (1987), S. 136-139 
    ISSN: 1432-198X
    Keywords: IgA nephropathy ; Genetics ; Complement ; C4 ; Glomerulonephritis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract C4 and factor B typing were performed in 37 pediatric patients with primary IgA nephropathy. Null alleles for C4B occurred with a frequency of 26% in patients, as compared to 15% in healthy controls (NS). The phenotype of C4B deficiency (homozygous C4B null), however, was found in 16% of patients and 4% of controls (P〈0.05). Comparison of observed C4B phenotypes with those predicted from the Hardy-Weinberg equilibrium also confirmed an excess of C4B deficiency (P〈0.0005). In contrast, there was no evidence of distortion in the frequencies of the C4A null allele or phenotype, or of the factor B alleles. The data suggest that C4B deficiency may be one of multiple interacting factors contributing to the development of this glomerulopathy.
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Pediatric nephrology 1 (1987), S. 397-404 
    ISSN: 1432-198X
    Keywords: Cystic kidneys ; Genetics ; Prenatal diagnosis ; Linkage studies ; Potter sequence
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Despite the high incidence of cystic kidney diseases, affected families are not usually well informed of the inheritance of these disorders. Genetic counselling must be based on precise diagnostic criteria. Detailed information on the different types of cystic kidney disease is summarized, including clinical features, pathology, radiology, prenatal diagnosis and the risk of recurrence. In addition, a genetic interpretation is given of the Caroli syndrome, Potter sequence as well as congenital hepatic fibrosis.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Pediatric nephrology 1 (1987), S. 436-438 
    ISSN: 1432-198X
    Keywords: Alport's syndrome ; Genetics ; Heterogeneity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The pattern of inheritance in Alport's syndrome has been controversial for some time. Recent studies have clarified the mode of inheritance in this disease. Alport's syndrome is a heterogeneous disorder made up of a number of genetically distinct syndromes, with an autosomal dominant, an X-linked dominant and a rare autosomal recessive form. Clinical analysis shows that there are many distinct forms with or without nerve deafness, and with early or late occurrence of end-stage renal disease.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
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    Springer
    European journal of pediatrics 146 (1987), S. 283-287 
    ISSN: 1432-1076
    Keywords: Pena-Shokeir I syndrome ; Facial anomalies ; Ankylosis ; Pulmonary hypoplasia ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Two siblings whose clinical and pathologic features were consistent with the “Syndrome of camptodactyly, multiple ankyloses and pulmonary hypoplasia” originally described by Pena and Shokeir were examined at autopsy. Additional features were intrauterine growth retardation, immaturity of the central nervous system (CNS) and atrophy of skeletal muscles. Our data suggest that CNS damage may cause the complicated phenotypic abnormalities of the syndrome.
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  • 7
    Electronic Resource
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    Springer
    European journal of pediatrics 146 (1987), S. 550-554 
    ISSN: 1432-1076
    Keywords: Epilepsy ; Genetics ; Myoclonic-astatic seizures
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract This paper presents case reports of patients suffering from myoclonic-astatic and stimulus-sensitive myoclonic seizures, respectively. It gives details of clinical and EEG data in the pertinent families. This is discussed in the context of controversial nosographic concepts of epilepsies with myoclonic seizures, and of the results of extensive family investigations. The findings demonstrate the decisive importance of hereditary factors in the pathogenesis of myoclonic and myoclonic-astatic epilepsy, the genetic background of which is probably polygenic.
    Type of Medium: Electronic Resource
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  • 8
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    Electronic Resource
    Springer
    Archives of microbiology 149 (1987), S. 36-42 
    ISSN: 1432-072X
    Keywords: Catabolite repression ; Genetics ; Malate dehydrogenase ; Molecular cloning ; Sequence ; CRP binding site ; Escherichia coli
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The malate dehydrogenase gene of Escherichia coli, which is susceptible to catabolite and anaerobic repression, has been cloned using plasmic pLC32-38 of Clarke and Carbon (1976). The nucleotide sequence was determined of a 2.47 kbp fragment, containing the mdh structural gene. All information necessary for expression of the mdh structural gene was mapped within a 1.3 kbp SphI-BstEII fragment. Compared with the untransformed wild type, transformations with pUC19 vector, containing this fragment, gave up to 40-fold more malate dehydrogenase activity in both E. coli wild type and mdh mutant recipients. Catabolite repression was not affected in the transformants. A possible CRP binding site in the promotor region of the mdh gene provides evidence for a co-regulation with fumA gene, the structural gene of fumarase, which is also subject to catabolite repression. The structures for transcription initiation and termination were similar to those previously described for E. coli. Amino acid sequence homologies between pro- and eucaryotic malate dehydrogenases are discussed.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 73 (1987), S. 440-444 
    ISSN: 1432-2242
    Keywords: Secale cereale L. ; Genetics ; α-Amylase ; Isozymes ; Modifiers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Fifteen inbred lines of rye, F1 and F2 progenies from crosses between lines were studied using polyacrylamide gel electrophoresis. Conventional genetic analysis of α-amylase zymograms showed that the 19 bands detected in the endosperm of germinating caryopses were controlled by three linked structural loci and one independent modifying locus, which influenced the electrophoretic mobility of isozymes. Two codominant alleles were found at the α-Amy1, α-Amy2 structural loci and the M-α-Amy modifying locus while the α-Amy3 locus had three alleles. Double-banded expression of the α-amylase alleles was probably due to the simultaneous presence of modified and unmodified forms of isozymes on the zymogram.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 74 (1987), S. 177-187 
    ISSN: 1432-2242
    Keywords: Barley ; Grain development ; Mutants ; Ultrastructure ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Eleven Na-azide induced barley shrunken endosperm mutants expressing xenia (sex) were characterized genetically and histologically. All mutants have reduced kernel size with kernel weights ranging from 11 to 57% of the wild type. With one exception, the mutant phenotypes are ascribable to single recessive mutant alleles, giving rise to a ratio of 3∶1 of normal and shrunken kernels on heterozygous plants. One mutant (B10), also monofactorially inherited, shows a gene dosage dependent pattern of expression in the endosperm. Among the 8 mutants tested for allelism, no allelic mutant genes were discovered. By means of translocation mapping, the mutant gene of B10 was localized to the short arm of chromosome 7, and that of B9 to the short arm of chromosome 1. Based on microscopy studies, the mutant kernel phenotypes fall into three classes, viz. mutants with both endosperm and embryo affected and with a non-viable embryo, mutants with both endosperm and embryo affected and with a viable embryo giving rise to plants with a clearly mutant phenotype, and finally mutants with only the endosperm affected and with a normal embryo giving rise to plants with normal phenotype. The mutant collection covers mutations in genes participating in all of the developmental phases of the endosperm, i.e. the passage from syncytial to the cellular endosperm, total lack of aleurone cell formation and disturbance in the pattern of aleurone cell formation. In the starchy endosperm, varying degrees of cell differentiation occur, ranging from slight deviations from wild type to complete loss of starchy endosperm traits. In the embryo, blocks in the major developmental phases are represented in the mutant collection, including arrest at the proembryo stage, continued cell divisions but no differentiation, and embryos deviating only slightly from the wild type.
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  • 11
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 74 (1987), S. 439-444 
    ISSN: 1432-2242
    Keywords: Wheat ; Callus ; Regeneration ; Tissue culture ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Calli were initiated from immature embryos of nine lines of hexaploid wheat (Triticum aestivum L. em. Thell). These were the euploid lines Chinese Spring and Cappelle-Desprez, a line of Chinese Spring ditelocentric for the long arm of 4B, four substitution lines of Chinese Spring in which chromosome 4B has been replaced by its homologues from different wheat varieties and substituted into Chinese Spring and a substitution line of Besostaya I 4B into Cappelle-Desprez. The calli from these lines were found to differ in their growth rates and morphogenic and regenerative activities. The substitution of different 4B chromosomes into Chinese Spring significantly increased morphogenesis and shoot regeneration from callus. The potential for developing wheat lines with improved culture characteristics is discussed.
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  • 12
    ISSN: 1617-4623
    Keywords: E. coli ; Genetics ; Polysaccharide biosynthesis ; Secretion
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Transposon and deletion analysis of the cloned K1 capsule biosynthesis genes of Escherichia coli revealed that approximately 17 kb of DNA, split into three functional regions, is required for capsule production. One block (region 1) is required for translocation of polysaccharide to the cell surface and mutations in this region result in the intracellular appearance of polymer indistinguishable on immunoelectrophoresis to that found on the surface of K1 encapsulated bacteria. This material was released from the cell by osmotic shock indicating that the polysaccharide was probably present in the periplasmic space. Insertions in a second block (region 2) completely abolished polymer production and this second region is believed to encode the enzymes for the biosynthesis and polymerisation of the K1 antigen. Addition of exogenous N-acetylneuraminic acid to one insertion mutant in this region restored its ability to express surface polymer as judged by K1 phage sensitivity. This insertion probably defines genes involved in biosynthesis of N-acetylneuraminic acid. Insertions in a third block (region 3) result in the intracellular appearance of polysaccharide with a very low electrophoretic mobility. The presence of the cloned K1 capsule biosynthesis genes on a multicopy plasmid in an E. coli K-12 strain did not increase the yields of capsular polysaccharide produced compared to the K1+ isolate from which the genes were cloned.
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  • 13
    ISSN: 1617-4623
    Keywords: NAD metabolism ; Regulation ; nadR ; Salmonella typhimurium ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The nadR locus (99 min) controls the transcription of several genes involved with either the biosynthesis (nadAB) or recycling (pncB) of NAD in Salmonella typhimurium. Point mutations in this locus were found to cause defects either in the transport of nicotinamide mononucleotide (PnuA-), the regulation of nadAB (NadR-) or both transport and regulation (PnuA-NadR-). Deletions or insertions into nadR always resulted in the PnuA- NadR- phenotypes. Merodiploids constructed with various combiminations of PnuA-, NadR- or PnuA-NadR- strains indicate a single complementation group. The results suggest the NadR product is a bifunctional regulatory protein. Operon fusions to lacZ (nadR:: Mud1-8) were used to show that nadR is not autoregulated and is transcribed in a clockwise direction. The gene was also cloned and located within a 2 kb EcoR1-BglII fragment.
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  • 14
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    Electronic Resource
    Springer
    International journal of anthropology 2 (1987), S. 141-149 
    ISSN: 1824-3096
    Keywords: Absolute finger ridge count ; Genetics ; Dermatoglyphics ; India ; Major gene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In order to test the hypothesis of a major gene effect on absolute total finger ridge count (ATFRC), the nature of relationship between mean ATFRC and its variability was evaluated in a series of 47 population samples from India. Regression analysis showed that both the standard deviation and the coefficient of variation are significantly related to mean ATFRC, and about 35% of the variation in ATFRC is explained by the dependent variable coefficent of variation. These results support the hypothesis of a major gene effect on the trait ATFRC.
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  • 15
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    Electronic Resource
    Springer
    Environmental biology of fishes 18 (1987), S. 249-256 
    ISSN: 1573-5133
    Keywords: Developmental rate ; Genetics ; Inheritance ; Meristic ; Salmonidae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Deviations from morphological intermediacy in six first generation hybrids between three hatchery strains of rainbow trout, raised in a common environment, are reported. Hybrids have higher mean counts of four meristic characters than their maternal parental strain in a significantly greater number of cases (18 out of 24). Furthermore, eight of eleven hybrid indices are not intermediate. These results are discussed in reference to several mechanisms and models proposed to account for observed responses of meristic characters to environmental and genetic influences.
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  • 16
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 31 (1987), S. 1-1 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 17
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 31 (1987), S. 33-44 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The theory of MCSCF and CI energy derivatives with respect to geometrical variations is briefly reviewed with special attention given to the MCSCF and MRCI energy gradients. A computational procedure is proposed for MRCI energy gradients that does not require the solution to any “coupled-perturbed MCSCF” equations, it does not require any expensive direct-CI matrix-vector products involving derivative integrals, and it does not require any derivative integrals to be transformed from the AO basis to the MO basis. An additional feature is that it does not require any changes to existing MCSCF gradient evaluation programs in order to compute MRCI gradients. The only difference in the two cases is the exact nature of the data passed to the gradient evaluation program from the previous steps in the computational procedure. The additional effort required to compute the entire MRCI energy gradient vector is approximately that required for one additional iteration of the MRCI diagonalization procedure and for one additional MCSCF iteration. For large scale MRCI wave functions, the MRCI energy gradient evaluation should only require about 10% of the effort of computing the wave function itself. This computational procedure removes a major computational botleneck of potential energy surface evaluation.
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  • 18
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 31 (1987), S. 65-71 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Preliminary results are presented for transition probabilities in the H + H2 system derived from an adiabatic representation in terms of surface functions on hyperspheres. Special attention is given to the resonance structure for transition probabilities in the first vibrational level.
    Additional Material: 3 Ill.
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  • 19
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 31 (1987), S. 99-112 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Low-lying excitation energies from the ground state of Be were calculated using a basis set of 61 Cartesian Gaussian functions. Three approximations were employed: the time-dependent Hartree-Fock (TDHF), second-order equations-of-motion (EOM), and multiconfigurational time-dependent Hartree-Fock (MCTDHF). The TDHF excitation energies are 0.5-1.1 eV lower than experiment, and the EOM values are 0.3-1.2 eV lower than experiment, whereas the MCTDHF excitation energies deviate on the absolute average from experiment by only 0.03 eV. We found that in an MCTDHF calculation, any proper MCSCF stationary point is a good reference (i.e., initial) state, not just the ground state. Experimental values for oscillator strength are accurately known only for the 2s2X1S → 2s2p1P0 transition. The TDHF value and the MCTDHF value agree with experiment, but the EOM value does not. The agreement of the TDHF value with experiment seems to be coincidental, because for higher lying transitions the TDHF values differ by approximately a factor of two or more from the more accurate MCTDHF. Frequency independent polarizabilities, α(0), were also calculated with the TDHF, HRPA, and MCTDHF and frequency dependent polarizabilities, β(ω), were calculated with the MCTDHF. No experimental data for Be polarizabilities exist, but we expect the MCTDHF values to be among the most accurate calculations available.
    Additional Material: 3 Ill.
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  • 20
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 31 (1987), S. 941-950 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A version of the CNDO/1 method has been outlined that includes dominant relativistic effects. The method utilizes a nonempirical parametrization based on atomic Dirac-Fock calculations. The goal of this QR-CNDO/1 method lies in its applicability to molecules consisting of arbitrary atoms (z = 1-118). Applications to molecular geometries and ionization potentials for 50 molecules are presented.
    Additional Material: 2 Ill.
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  • 21
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 22
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 13-18 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: According to the formulas obtained in the preceding paper, it may be used for all types of the hybridization with any set of azimuthal quantum numbers l, l = 0 through l = 5, and a complete theoretical data of bond angles and bond strengths are shown in this paper.
    Additional Material: 2 Tab.
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  • 23
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 71-86 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the unitary-group formulation of quantum chemistry, the spin-projected, configuration-state spaces of quantum chemistry are realized by the irreducible representation spaces (IRS) of the freeon unitary group U(n), where n is the number of freeon orbitals. The Pauli-allowed IRS are labeled by the partitions [λ] = [2(N/2)-s, 12S], where N and S are the particle number and the spin, respectively. The generator-state approach (GSA) to the unitary-group formulation consists of (1) the construction of the overcomplete, nonorthonormal generator basis for each IRS; (2) the Lie-algebraic computation of matrix elements over generator states; (3) the Moshinsky-Nagel construction of the complete, orthonormal Gel'fand basis in terms of the generator basis; and (4) the computation of matrix elements over Gel'fand states in terms of matrix elements over generator states.
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  • 24
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 25
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 181-191 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It has been shown that an easier procedure to the study of molecular electrostatic potentials than the prevalent monopole isopotential approach is to use a dipole as the mapping device: allow the dipole to move on a geometrical surface enclosing the molecule such that the distance between the surface and the nearest atoms of the molecule (closest distance of approach) is fixed, say at 2 Å, calculate the electrostatic interaction energy between the molecule and the dipole at different points of the surface, and let the dipole orient itself along the minimum energy direction and treat these minimum energies as the desired electrostatic potentials. Thus the favorable binding sites of a given molecule for other species along with their relative orientations can be obtained. This procedure has been applied to the nucleic acid bases using the necessary input data from two independent sources. Thus success of the procedure in predicting important features of molecular electrostatic potentials has been demonstrated.
    Additional Material: 4 Ill.
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  • 26
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A systematic examination of the components of the interaction energy, obtained with the Kitaura and Morokuma method, for nine H-bonded dimers without and with counterpoise corrections (CP) is presented. The nine dimers Hn A … HBHm correspond to all the possible combinations of HF, H2O, and NH3 as electron donors and electron acceptors. The interaction energy and the corresponding components have been computed over a sizable interval of intermolecular distances with five basis sets (STO-3G, MINI-1, 3-21G, 4-31G, 6-31G**) selected among those most extensively used to study interactions in larger systems. The CP corrections to the ΔE components have been obtained with a method, implemented in our group, which permits assignment to the pertinent components of ΔE of a physically reasonable portion of the CP correction even though different CP corrections are adopted. We examine here three versions of the CP correction, namely, the full CP correction (i.e., the original version of Boys and Bernardi) and CP corrections limited to the virtual space of the partner or to the electron donor only. The resulting data are employed to assess the basis set dependence of several models of hydrogen bonding (the electrostatic model, the semiclassical model, etc.) both with and without CP corrections.
    Additional Material: 9 Ill.
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  • 27
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A detailed analysis of the ΔE(R) curves for nine hydrogen bonded dimers involving HF, H2O, and NH3 as partners, computed with five basis sets (STO-3G, MINI-1, 3-21G, 4-31G, and 6-31G**) and subjected to counterpoise (CP) corrections with three different methods is reported. Using several criteria and tests, the positive effect of full CP corrections for the description obtained with all the basis sets (with the exception of the STO-3G one) is pointed out. The CP correction at the 6-31G** levels is still sizable and improves the results with respect to the estimated Hartree-Fock limits of ΔE(Req) and Req. The results obtained with the application of the full CP correction to the MINI-I energies are of relatively good quality. The STO-3G energies at the SCF level are, on the contrary, overcorrected by the full CP correction and slightly improved by “limited” CP corrections: this basis set, however, is not recommended for calculations of geometries and stabilization energies of H-bonded dimers of this size.
    Additional Material: 7 Ill.
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  • 28
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 295-312 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An accurate analytical electron density for the beryllium atom is obtained by using a fast and systematic method recently developed and tested for the neon atom. Asymptotic conditions both at the nucleus and at large distances are obeyed. A point-by-point comparison between our density and the one obtained from an almost “exact” configuration interaction wave function shows that differences are less than 0.5% for r between 0 and 5 bohrs and less than 1 % up to 9 bohrs. The accuracy of the density is also assessed by comparing results of density moments and x-ray scattering factors.
    Additional Material: 2 Ill.
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  • 29
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 361-375 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We discuss a procedure for calculating numerical Hartree-Fock orbitals that can be applied to polyatomic systems. This approach is formulated in momentum space to avoid Coulomb singularities and uses fast Fourier transforms to solve integral convolutions. Results for a number of simple systems are presented.
    Additional Material: 5 Tab.
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  • 30
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    International Journal of Quantum Chemistry 31 (1987), S. 405-415 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Binding of Zn2+ to imidazole (Im) and methyl imidazole (MeIm) is studied by ab initio methods as a model for the effect of cation binding on tautomeric energies. Gradient energy optimized conformations were obtained for all neutral and ionic structures, including the deprotonated molecules and the ylides. The N3—H tautomer of MeIm is calculated to be more stable than N1—H by about 1 kcal/mole. However, binding of a Zn2+ cation to the available nitrogen site is found to reverse the order of binding, leaving N1—H more stable by 1 kcal/mole. Binding of Zn2+ produces a significant perturbation in the electronic structure, a smaller shift in the equilibrium conformation of the imidazole ring, and only a small absolute shift in the relative tautomer energies. Methyl substitution at C5 has a small effect on both conformation and energetics.A high-energy ylide tautomer is produced by moving the proton bound to C2 to the N1 atom. The binding of Zn2+ to the C2 site is substantially stronger than to the N1 site, yielding nearly isoenergetic ZnIm2+ conformations for binding to either N or C atoms. For the deprotonated salts the lowest energy conformation has the C2—N3 bond bridged by Zn2+.
    Additional Material: 7 Tab.
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  • 31
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    International Journal of Quantum Chemistry 31 (1987), S. 425-427 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is made clear that two different statements in the literature concerning energy derivatives are completely compatible by deriving them as two different interpretations of the same equation. Some other aspects of these results are also discussed.
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  • 32
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    International Journal of Quantum Chemistry 31 (1987), S. 435-443 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Accurate methods for computing energies and electronic properties of atoms and molecules have been derived from direct treatment of localized pairs of electrons. The conceptual development and implementation of such methods is reviewed.
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  • 33
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    International Journal of Quantum Chemistry 32 (1987), S. 473-489 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rigorous derivation of the energy density functional is proposed within the framework of the spinfree, or spin-restricted formulation of the energy density functional theory. It is shown particularly that the kinetic energy density functional is given by a sum of the Weizsacker term and the so-called “modified” Thomas-Fermi one. The variational principle is formulated for the energy density functional theory in terms of the Euler-Lagrange equation, and the virial theorem is proposed.
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  • 34
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    International Journal of Quantum Chemistry 32 (1987), S. 591-594 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The time-dependent Schrouml;dinger equation for the oscillator H = α(t)p2 + β(t)x2 + γ(t)x is exactly solved. The time evolution operator is easily obtained by means of an operator algebra and the quantum-mechanical equations of motion. The problem is reduced to solving the classical equations of motion. The method is shown to apply to multidimensional oscillators.
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  • 35
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    International Journal of Quantum Chemistry 31 (1987), S. 445-453 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A modified Bohr orbit procedure is used to calculate the energies for the 1S ground state and the 2P, 3D, and 4F excited states of the helium atom. The energies are calculated from \documentclass{article}\pagestyle{empty}\begin{document}$ {{\int\limits_0^\pi {E\left(\Phi \right)P\left(\Phi \right)d\Phi } } \mathord{\left/ {\vphantom {{\int\limits_0^\pi {E\left(\Phi \right)P\left(\Phi \right)d\Phi }} {\int\limits_0^\pi {P\left(\Phi \right)d\Phi } }}} \right. \kern-\nulldelimiterspace} {\int\limits_0^\pi {P\left(\Phi \right)d\Phi } }} $\end{document}, in which E(φ) is the Bohr orbit energy for angle φ between the position vectors \documentclass{article}\pagestyle{empty}\begin{document}$ \vec r_1 $\end{document} r1 and \documentclass{article}\pagestyle{empty}\begin{document}$ \vec r_2 $\end{document} r2, and P(φ) is a probability function for this angle. Numerical procedures are used to evaluate the integrals. Energies that range between -2.9082 and -2.9054 au are calculated for the 1S state (cf. -2.9037 au, exact). The Bohr energies for the excited states are -2.1318, -2.1240, -2.0562, -2.0555, -2.0314, and -2.0312 au, which are generally close to the exact energies of -2.1332, -2.1239, -2.0557, -2.0557, -2.0313, and -2.0313 au for the 23P, 21P, 33D, 31D, 43F and 41F states. Some relationships that exist between the Bohr theory and the Schrödinger local energies are discussed. Approximate Bohr orbit estimates for the energies of the 2P states of He, Li+,…,Ne8+ are reported.The invariance of the two-electron Bohr hamiltonian with respect to the interchange of the electron coordinates leads to two classical probability functions when the orbit quantum numbers for the two electrons differ.
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  • 36
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    International Journal of Quantum Chemistry 31 (1987), S. 463-470 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Valence-bond calculations are reported for the isoelectronic series of molecules and ions: N2, CO, BF, NO+ and CN-. The most important structures are N≡N, C=O, Bπ—F, N+=O and C=N. Hybridization of the 2s and 2p orbitals is important. Only two or three structures are required to obtain an energy lower than that obtained with the molecular orbital approximation. Structures in which the electronegative element loses a σ-orbital or gains a π-orbital are favored. π-bonds tend to be favored over σ-bonds. The bond in NO+ resembles that in CO, whereas that in CN- resembles the bonding in N2.
    Additional Material: 5 Tab.
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  • 37
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    International Journal of Quantum Chemistry 31 (1987), S. 471-487 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio SCF, CI, CEPA, and MCSCF techniques are compared and contrasted in a theoretical study of the 1s core ionized Li2 molecule from the point of view of core hole localization. In agreement with earlier studies of symmetric core ionized molecules, SCF theory is found to give a physically reasonable description of core ionization only when symmetry breaking is allowed. This results in a dramatic lowering of the energy of the core ionized state and hence of the ionization potential. By extension, CI wave functions that are developed in terms of a broken symmetry SCF reference plus its single and double excitations are found to perform significantly better than those constructed from symmetry adapted SCF orbitals. Alternatively, if the full point group symmetry is to be retained, a multiconfigurational treatment is called for and, in agreement with the conclusions of an analogous study on O2 [H. Ågren, P.S. Bagus, and B.O. Roos, Chem. Phys. Letters 82, 505(1981)], it is found that a modestly sized MCSCF wave function is capable of accounting for the energetic effects of symmetry breaking. Potential energy curves for Li2 and several states of core ionized Li2 have been calculated, allowing predictions of the adiabatic ionization potential and vibrational, satellite, and Auger structures in the photoelectron spectrum of Li2 to be made.
    Additional Material: 4 Ill.
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  • 38
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    International Journal of Quantum Chemistry 31 (1987), S. 489-505 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A practical algorithm is described for generating a set of symmetry- and spin-adapted antisymmetrized products of molecular orbitals (SAAPs) which form an orthogonal basis for a full active configuration space. The spin-adaptation is completely general. The space-symmetry adaptation is accomplished for the groups C∞v and D∞v.
    Additional Material: 4 Tab.
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  • 39
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    International Journal of Quantum Chemistry 32 (1987), S. 685-697 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A complete description of the rotational isomerism of monothioformic acid is presented. Ab initio results concerning the barrier heights and the energy difference between the stable isomers are in good agreement with the experimental data. A reduced potential function deduced from our calculations has been used to characterize the kinetics and thermodynamics of the rotational isomerization. The reported ab initio values of equilibrium constants are in good agreement with the experimental ones. From the analysis of the available experimental data, we have found that the free energy and enthalpy behavior are quite similar and that no noticeable entropy contributions are involved in the internal rotation, in agreement with previous studies on unimolecular isomerization processes.
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  • 40
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    International Journal of Quantum Chemistry 32 (1987), S. 723-723 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 41
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    International Journal of Quantum Chemistry 32 (1987), S. 1-1 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 42
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    International Journal of Quantum Chemistry 32 (1987), S. 85-103 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The equilibrium geometry, stabilization energy, and electric polarizability of formic acid, formamide, and the three possible cyclic hydrogen-bonded pairs are obtained by ab initio calculations using the STO-3G, 4-31G, and 6-31G** bases. These three properties are found to be very much dependent on the basis set extension. The polarizability of the dimers is found to be basically additive in contribution from the monomeric moieties.
    Additional Material: 5 Ill.
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  • 43
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    International Journal of Quantum Chemistry 32 (1987), S. 133-147 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the course of conformational motions of molecules the changes in shapes of electronic charge distributions follow that of the nuclear framework. However, this coupling between the changes in the nuclear geometry and electron density may depend on the actual nuclear displacement; the coupling may be weak or strong for a given conformational motion. It is of some interest to analyze how faithfully the charge density variations follow the nuclear displacements in a family of conformational rearrangements. In certain cases small conformational changes may induce large changes in the shape of charge density distributions, while in other cases large and qualitatively important conformational changes may involve qualitatively inessential distortions in the shape of electron distributions. In this article we describe a new classification of conformations based on those domains of nuclear configuration space within which the „shape groups“ (symmetry independent homology groups) of the electric charge density remain invariant. Such an analysis might be valuable when seeking correlations between molecular structure and certain biological or biochemical activities.
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  • 44
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    International Journal of Quantum Chemistry 32 (1987), S. 211-219 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Practical aspects of the calculation of the proton transfer process in a model of the active site of the thiol protease papain are explored with basis sets of different sizes. Results from ab initio calculations with the STO-3G, 4-31G, 6-31G, 6-31G* basis set, and a 6-31G basis set augmented with polarization functions on the sulfur atom are compared for their performance in describing the proton transfer energy. The nature of the convergence of the calculated properties of the potential curve for proton transfer with the increase in basis set indicates the need for a split-valence basis set and for polarization functions on the sulfur in order to achieve an appropriate description of this system. Correlation corrections to the calculated energies are shown to contribute significantly to the characteristics of the proton transfer energy curve.
    Additional Material: 4 Ill.
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  • 45
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    International Journal of Quantum Chemistry 32 (1987), S. 281-288 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The scope of multistep modeling (MSM) is expanded by adding a least-squares minimization step in the procedure to fit backbone reconstruction consistent with a set of C-alpha coordinates. The analytical solution of Phi and Psi angles, that fits a C-alpha x-ray coordinate [1] is used for tyr-tRNA synthetase. Phi and Psi angles for the region where the above mentioned method fails, are obtained by minimizing the difference in C-alpha distances between the computed model and the crystal structure in a least-squares sense. We present a stepwise application of this part of MSM to the determination of the complete backbone geometry of the 321 N terminal residues of tyrosine tRNA synthetase to a root mean square deviation of 0.47 Å from the crystallographic C-alpha coordinates.
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  • 46
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    International Journal of Quantum Chemistry 32 (1987), S. 325-330 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have examined an application of the weighted identification number in the QSAR study of the toxicity of aliphatic ethers on mice. The results obtained are superior to those achieved by the connectivity index.
    Additional Material: 3 Tab.
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  • 47
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    International Journal of Quantum Chemistry 32 (1987) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 48
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    International Journal of Quantum Chemistry 32 (1987), S. 13-14 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 49
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    International Journal of Quantum Chemistry 32 (1987), S. 89-97 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio self-consistent-field electronic state calculations have been carried out for an interstitial-iron-substitutional-boron impurity pair complex in silicon. The calculations do not provide support for the currently accepted microscopic ionic model for the pair. Rather, we have shown that the covalent effects play a basic role in determining the physical properties of the complex.
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  • 50
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    International Journal of Quantum Chemistry 32 (1987), S. 115-129 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By analyzing the convergence properties of the lattice sums in the exchange part of the restricted Hartree-Fock orbital energy, we isolate the source of the nonanalytic behavior of a partially occupied band at the Fermi energy. This analysis shows how an extended system behaves qualitatively differently from a finite system but also provides a possibility of following the development of nonanalyticity as the size of the system grows.
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  • 51
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    International Journal of Quantum Chemistry 32 (1987), S. 163-170 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The aromatic (A) and quinoid (Q) forms of polythiophene (PT) have entirely different energy gaps: ∼0.5 eV for the quinoid form and ∼2 eV for the aromatic form, respectively. The energy gaps and stability of derivatives of PT are studied by total MNDO geometry optimization using energy band theory for the total energy calculations followed by a Hückel energy band calculations to approximate the energy band structure. Addition of fused rings to PT reverses the order of stability of the aromatic and quinoid isomers and the ordering in the size of the energy gaps. Small energy gap polymers are suggested on the basis of the calculations.
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  • 52
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    International Journal of Quantum Chemistry 32 (1987), S. 191-198 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Chemical reactions and conformational changes of N-atom systems can be described as displacements in a (3N-6)-dimensional metric configuration space M provided with a global metric. Although space M has a metric, it is not in general a vector space; it is a topological space. In contrast to the commonly used internal configuration spaces based on bond length/bond angle internal coordinates, and having no global metrics, within space M each internal configuration of the nuclei of the molecule corresponds to one and only one point of the space. This property of M is advantageous when analyzing chemical reactions. The global metric of M ensures that differences between any two internal configurations can be interpreted as a distance in this space that allows one to provide M with coordinate systems by turning M into a manifold with boundary. Certain formal reaction paths show some counterintuitive behavior within this space: they may undergo a formal reflection at some points of M. A condition, the tangent criterion, is used for the diagnosis of such reaction paths and for the determination of special nuclear configurations where such reflections occur.
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  • 53
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    International Journal of Quantum Chemistry 31 (1987), S. 649-662 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Energies and geometries for a number of small hydrogen bonded dimers have been calculated by semiempirical method based on a perturbation approach. Results have been compared with experimental and the best theoretical data. A quite good description of equilibrium configurations has been obtained in every case when local multipoles from sufficiently accurate wave functions have been used. Hydrogen bond lengths have not been predicted with sufficient precision. Results indicate, however, that it should be possible to achieve improvement in the framework of the applied calculation scheme by modification of the parameter values.
    Additional Material: 4 Ill.
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  • 54
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    International Journal of Quantum Chemistry 32 (1987), S. 283-295 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We examine the photoaddition of hydroxylazoaromatic compounds and related thione analogs with olefins. By examining the properties of the lowest lying singlet and triplet states, we conclude that the product distribution is best described by the unpaired spin density of the triplet state. This suggests that absorption of light by the aromatic is followed by conversion into the triplet, and this triplet is the active precursor. Since unrestricted molecular orbital calculations are easily performed on the lowest triplet of these aromatics, prediction of possible products is straightforward.
    Additional Material: 7 Ill.
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  • 55
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    International Journal of Quantum Chemistry 32 (1987), S. 267-282 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Hydrogen addition to acetylene has been studied by molecular orbital methods with the unrestricted Hartree-Fock (HF)approach and with Møller-Plesset (MP) perturbation theory up to fourth order using the 6-31G*, 6-31G**, and 6-311G** basis sets. For each basis set a number of points along an approximate reaction path were calculated by fixing the attacking H—C distance and optimizing all of the remaining parameters. At these geometries, single point MP4 calculations with and without spin projection were carried out, yielding the position, height, and shape of the addition barrier at the various levels of calculation with each of the three basis sets. The results of this approach were confirmed by a grid search of the region near the transition state using the 6-31G* basis set. The unprojected MP2, MP3, and MP4 barriers are too narrow and are 10-20 kcal/mol too high. With spin projection, the barriers are much lower and broader. At the PMP4SDTQ/6-311G** level, with zero point energy calculated at UHF/6-31G*, the vibrationally adiabatic barrier at 0 K is 4.0 kcal/mol, and the attacking H—C distance is 2.0 Å.
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  • 56
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    International Journal of Quantum Chemistry 32 (1987), S. 313-319 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We explore the implications of static disorder on electron transfer (ET) in a microscopically inhomogeneous polar medium, where the environment of each solute is characterized by a single dielectric relaxation time, τ, with the distribution function of τ being related to the complex dielectric susceptibility. For the interesting situation of solvent-controlled ET, the decay of the population probability is nonexponential, which can be expressed in terms of a cumulant expansion. The microscopic decay function can be related to the macroscopic step-response function of the dielectric medium.
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  • 57
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    International Journal of Quantum Chemistry 32 (1987), S. 355-362 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A self-consistent model capable of describing the interaction of a metal electrode/liquid electrolyte interface is presented. As in a real system, a capacity maximum shifted towards positive charges is obtained from the model. The metal is represented by the planar uniform background model (jellium). The solvent is described by a polar liquid whose response to charge is accounted for in terms of the local approximation. The interaction between the metal and ions is modelled by a charged plane placed near the metal surface. Charge neutrality of the whole system is preserved. The present model is a good approximation for highly concentrated solutions.
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  • 58
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    International Journal of Quantum Chemistry 31 (1987), S. 733-737 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we outline briefly how microlocal analysis can be applied to give a general approach to the mathematical theory of resonances in the semiclassical limit. We also describe recent results about the asymptotic behavior of resonances generated by closed trajectories and stationary points in the classical flow.
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  • 59
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    International Journal of Quantum Chemistry 31 (1987), S. 739-746 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we make explicit constructions of a family Aθ of intertwining operators between the Schrödinger operator Hv = -Δ + v(x) and H0 = -Δ. The wave operators and the scattering matrix are expressed in terms of the Aθ, and some methods of inverse scattering are described.
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    International Journal of Quantum Chemistry 31 (1987), S. 707-731 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Examples from music and nuclear, as well as atomic and molecular, physics are given to introduce and illustrate the resonance concept. Some fundamental concepts of scattering theory such as the differential and the total cross section are presented. The concept of the collision complex is illustrated with a light particle scattering reaction in nuclear physics. The concept of channels is introduced, and this formalism (which is so far empirical in nature) is dressed in the language of quantum mechanics. Finally I show that our descriptions of phenomena in nuclear physics can also be used in atomic and molecular physics.
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The analytic energy gradient method that we have recently implemented for CCSD wave functions is applied to fully optimize the pyramidal C3v and planar D3h structures of ammonia. Using a double-zeta plus polarization basis set, results for harmonic vibrational frequencies, infrared intensities, and dipole moments have been obtained. Comparison with different levels of truncated configuration interaction suggests that CCSD values are of better than CISD quality and generally closer to CISDTQ results.
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  • 62
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    International Journal of Quantum Chemistry 32 (1987), S. 539-545 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Effective core potentials are utilized in conjunction with polarization propagator calculations of excited state properties. The propagator method employed is based on an antisymmetrized geminal power wave function as the reference state. Calculations are presented on the low-lying excited states of HF and NaH. All-electron and valence-electron results are compared for HF. The choice of basis set is found to be very important for obtaining good results.
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  • 63
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    International Journal of Quantum Chemistry 32 (1987), S. 569-572 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nonadiabatic energy correction term of the hydrogen molecule at large separation is discussed to determine whether or not the nuclear motion induces the inter-atomic interaction potential. Nonadiabatic vibrational motion of nuclei induces the internal charge polarization of atoms to give the novel correction term to the London R-6 force. The correction term is (4/M) (1/R3), which is important at large R despite the overwhelming magnitude of nuclear mass.
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  • 64
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    International Journal of Quantum Chemistry 31 (1987), S. 755-794 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: As an extension of the recent atomic work of Krylstedt et al. [1, 2], we propose the synthesis of the static exchange plus polarization model within the multiple scattering Xα formalism and the exterior complex rotation method for the study of shape resonances occurring in molecular collisional systems. The bound state multiple scattering Xα method is reviewed with special attention to the form of the various wave functions for the different molecular regions. In connection with the inclusion of continuum electron exchange into the scattering model, we analyze a possible solution to the problem of asymptotical behavior caused by the local density-based free electron gas approximation used in this case. We also propose a method to fix the cutoff parameter, inherent in the polarization potential, for symmetry-related molecular participants in the scattering process, thereby obtaining a possible predictive power for the one-parameter scattering model.Titchmarsh-Weyl's theory is used to formally connect the above formulation to scattering theory. The theoretical difficulties in obtaining a unique meromorphic continuation of the S matrix are investigated in connection with the requirements on the actual potential to be exterior dilation analytic. Furthermore, the occurrence of asymptotic quantum numbers is noted and discussed in conjunction with muffin tin-like approximations and related exterior complex rotated schemes.It is found that the electron exchange part of the nonstatic one-body potential exhibits a functional form that is not exterior dilation analytic, albeit the general electron and nuclear many-body problem involving Coulomb forces are dilation analytic. Although the immediate consequences indicate a rotation angle (θ) dependence on the S matrix continuation, a uniquely defined assignment of the cutoff parameter r0 = r0(θ) makes the present nonstatic model “exterior dilation analytic” in the sense that it mimics the dilation analytic structure of the full many-body problem at the same time obeying “asymptotic” spherical symmetry via the associated constant of evolution. However, in the static exchange approximation the above difficulties are shown to be circumvented via a certain reformulation, leading to a regular analytic asymptotic form for the interaction potential.
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  • 65
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    International Journal of Quantum Chemistry 31 (1987) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 66
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    International Journal of Quantum Chemistry 31 (1987), S. 841-845 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present article we show how the bound states of the Coulomb potential may be associated with resonances that occur when this potential is perturbed by a barrier potential. The main idea is to trace the bound states on successive switching on of the barrier perturbation. It is found that those bound states that are localized inside the barrier are highly sensitive to variation with respect to the barrier height, whereas those that are localized outside are less sensitive. However, there are certain intervals for the barrier height when the role of being “a state localized inside the barrier” is shifted from one bound state to another. The result can be pictured as a “relay race,” where the “deliveries of the baton” are carried out over corresponding avoided crossings. The baton is ultimately handed over to a shape-type resonance state.
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  • 67
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    International Journal of Quantum Chemistry 31 (1987), S. 847-853 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Methyl substitutents located peri to bay-region benzo rings of polycyclic aromatic hydrocarbons generally reduce or eliminate carcinogenic activity, most likely because such substituents force the hydroxyl groups of dihydrodiol intermediates to adopt preferentially pseudodiaxial, rather than pseudodiequatorial, conformations. Empirical force field calculations have been employed to examine the influences of peri and other positional substituents on hydroxyl conformation, taking naphthalene, anthracene, and phenanthrene as model compounds. For the unsubstituted naphthalene and anthracene dihydrodiols, the pseudodiequatorial conformation is preferred. This preference is reduced by adjacent methyl substitution and reversed by peri methyl substitution. Because of steric crowding the phenanthrene bay-region dihydrodiol preferentially adopts a pseudodiaxial conformation. The results are discussed in relation to recent experimental evidence.
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  • 68
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    International Journal of Quantum Chemistry 31 (1987), S. 855-869 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic absorption spectra of some phenylethylamine drugs, namely, d-pseudoepherine, l-pseudoephedrine, l-ephedrine, dl-ephedrine dl-norephedrine, phenylethylamine, methoxyphenamine, and l-noradrenaline were investigated in polar and nonpolar solvents. The observed transitions were interpreted, and the role of σ-π interaction was explored. Molecular orbital calculations were performed on representatives of the above group of compounds, namely, d-pseudoephedrine, l-ephedrine, and l-noradrenaline using the INDO procedures and adopting the best conformer of the molecule. The transition energy, band intensity, and dipole moments were calculated and corresponded satisfactorily with the experimental values.
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  • 69
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    International Journal of Quantum Chemistry 31 (1987), S. 893-901 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The analytic expressions of the integral prototypes involving both Slater and s-type Gaussian functions, explicity derived in Ref. 1, are generalized to the case of higher order modified Gaussian functions [2].
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  • 70
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By expanding the wave function of a system of N particles in terms of products of functions of one and (N-1) particles, the one-particle, nonlocal operator F̂EKT (extended Koopmans' theorem) is determined. It is shown that although this operator is nonhermitian, its eigenvalues and eigenfunctions represent the ionization energies and occupied orbitals, respectively. The eigenfunctions of F̂EKT are the one-particle functions that enter into the expansion of the wave function of the system as partners of the (N-1)-particle wave functions. The eingenvalues are also one-particle energies that, multipled by the orbital occupancy probalities, enter the expression for the total N-particle energy of the system.
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  • 71
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    International Journal of Quantum Chemistry 31 (1987), S. 927-939 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We apply completely transferable, strictly localized molecular orbitals for the calculation of molecular electrostatic fields. This approach, derived from our previous bond fragment method for the calculation of molecular electrostatic potentials, reduces computational efforts drastically. The fields around small molecules containing first- and second-row atoms are systematically overestimated as compared with ab initio calculations with a minimal STO-3G basis set. However, deviations can be corrected by a simple multiplicative factor, which means that the overall shape of the potential and field around the molecule is correctly reproduced. Our approximate field can be used to determine possible hydration sites around molecules as proposed earlier by Peinel and coworkers. Application of the method is illustrated on the formamide molecule.
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    International Journal of Quantum Chemistry 32 (1987), S. 399-399 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 73
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    International Journal of Quantum Chemistry 32 (1987), S. 403-403 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 74
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    International Journal of Quantum Chemistry 32 (1987), S. 427-434 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The quality measure δ of Sordo and Pueyo is computed for 94 orbital basis sets for the atomic helium Hartree-Fock problem and compared with various information theoretic quality measures reported previously by us for this data base. δ is in error often enough that it is unlikely to be a useful general purpose measure.
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  • 75
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    International Journal of Quantum Chemistry 32 (1987), S. 457-466 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Sturmian transformation is reviewed and some of its properties are discussed, in particular, its use in perturbative approaches, its connection with variational schemes, and its use for the study of resonances. One potential problem (Doolen) having no bound states is described exactly.
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  • 76
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    International Journal of Quantum Chemistry 32 (1987), S. 27-35 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Basis set and correlation effects on computed hydrogen bond energies of the negative ion complexes AHn · AHn-1-1, for AHn = NH3, OH2, and FH, have been evaluated. The addition of diffuse functions on nonhydrogen atoms to valence double- and triple-split plus polarization basis sets [6-31G(d, p) and 6-311G(d, p)] significantly decreases binding energies by 9-19 kcal/mol, depending on the particular complex and the level of theory. Adding diffuse functions to hydrogens has a negligible effect, while replacing the single set of polarization functions on each atom by two sets alters energies by 1 kcal/mol or less. Electron correlation increases the hydrogen bond energies of these complexes and has a greater effect for basis sets without diffuse functions. Since the Hartee-Fock energies computed with these basis sets are already too large, correlation energy calculations should not be performed in these cases. For basis sets including diffuse functions, the correlation energy contribution to the binding energies of these complexes is significant, with the Møller-Plesset second-order term being the largest term and having a stabilizing effect of from 3-6 kcal/mol. The third and fourth order terms are smaller, and may be of opposite sign. As a result, the MP2 and MP4 energies differ by no more than 1 kcal/mol, with the MP2 stabilization energy being greater except for N2H5-1. The computed standard solvation enthalpy of OH-1 by H2O based on either MP4/6-311 + G(2d, 2p) or MP2/6-31 + G(d, p) electronic energies is -26.8 kcal/mol, in excellent agreement with a recent gas-phase experimental measurement.
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    International Journal of Quantum Chemistry 32 (1987), S. 105-110 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new definition of molecular similarity in terms of electron density is proposed and a method for calculating similarity based on molecular electrostatic potential and molecular electric field introduced. It is applied to some simple isosteres.
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  • 78
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    International Journal of Quantum Chemistry 32 (1987), S. 127-132 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Most of the important conformations of biomolecules possess only trivial symmetry. Consequently, symmetry groups have no roles in the characterization of the shapes of such conformations. However, an alternative group theoretical model, based on homology groups of algebraic topology, provides a detailed description of shapes for all conformations. These shape groups are useful for precise comparison of molecular shapes and are proposed as a computational tool for QSAR. A new computational method for the determination of various shape groups is described which is suitable for the simultaneous analysis of a pair or a family of molecular properties. In this note a general method is described and applied to the shape of electronic charge distribution along van der Waals surfaces.
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  • 79
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    International Journal of Quantum Chemistry 32 (1987), S. 189-209 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Studies on the proton transfers in water clusters (H2O)n (n = 2, 3, 4, 5, 6), and in DNA base pairs, adenine-thymine base pair, and guanine-cytosine base pair, have been done by using the potential functions of polarization model for water and ab initio SCF method with STO-3G basis set for base pairs, respectively.
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  • 80
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    International Journal of Quantum Chemistry 32 (1987), S. 261-280 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Briefly noting earlier studies on the polypentapeptide of elastin, (Val1-Pro2-Gly3-Val4-Gly5)n, and on elastin, it is emphasized that entropic elastomeric force can be exhibited by nonrandom, anisotropic polypeptide systems and therefore that entropic elastomeric force does not necessarily result from isotropic random chain networks as required by the classical theory of rubber elasticity, nor does it result from solvent entropy effects as deduced from the slow loss of elastomeric force on thermal denaturation. Instead entropic protein elasticity can be the result of internal chain dynamics, specifically of librational processes that become damped on chain extension. This new mechanism of entropic protein elasticity allows for an understanding not only of elastin but also of the passive tension of striated muscle, of the voltage-dependent interconversion between open and closed conductance states in the sodium channel of squid nerve, and of protein elastic forces producing strain in a substrate bond during enzyme catalysis. Because entropic elastomeric force develops as a result of an inverse temperature transition, it becomes possible to shift the temperature of the transition to higher or lower temperatures by decreasing or increasing, respectively, the hydrophobicity of the elastomeric polypeptide chain. In warm-blooded animals this allows for biochemical modulation of the relaxation or development of entropic elastomeric force by an enzymatically modulated decrease or increase of the hydrophobicity, as for example, by phosphorylation or dephosphorylation of the elastomeric polypeptide chain. This understanding provides a mechanism for modulating protein function, whether for example enzymatic or channel, a mechanism for the remarkable reversible structural processes that attend parturition, and a mechanism for the connective tissue anomalies of wound repair and enviromentally induced lung disease.
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    International Journal of Quantum Chemistry 32 (1987), S. 297-315 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have recently discovered a new entirely unexpected, and highly selective protein - ligand interaction. This new kind of molecular interaction was recognized by chromatography of proteins on divinylsulfonated agarose gels which had been deactivated using mercaptoethanol. The essential structure of the interacting immobilized ligand is quite simple and nonionic. It can be generally represented by: \documentclass{article}\pagestyle{empty}\begin{document}$$\hbox{agarose-O-CH}_2 \hbox{CH}_2\hbox{-SO}_2\hbox{-CH}_2\hbox{-X-}$$\end{document} where X was first a thioether but can also be N, O(S 〉 N ≫ O) or possibly any atom with at least one lone electron pair. We have provisionally termed peptides and proteins interacting with this ligand „thiophilic,“ in recognition of their affinity for the definitive thioether sulfone constituents. The thiophilic adsorption process is promoted by water-structuring or „antichaotropic“ salts such as sulfates or phosphates and would appear to be entropically driven. The thermodynamics of such a process are discussed relative to protein recognition of the immobilized thioether-sulfone ligand. We do not yet know the precise mechanism for the interaction but we believe that salt allows the protein into close contact with the immobilized thioether-sulfone group where short-range forces are likely to be important. Evidence suggests that aromatic side chains on the protein-binding site may be involved and we therefore expect that some kind of electron-donor-acceptor or proton-acceptor mechanism is likely involved. Two important applications of thiophilic adsorption are the selective immobilization of functional antibodies as well as purification of immunoglobulins from serem, ascites fluid, and hybridoma cell culture media. Monoclonal antibodies can be purified in one step under extremely mild (structure-stabilizing) conditions. We therefore consider the further characterization of thiophilic adsorption of major significance in the fields of immunology and biotechnology and hope that this presentation will inspire attempts to explain the interaction in terms of quantum chemistry.
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    International Journal of Quantum Chemistry 32 (1987), S. 347-349 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    International Journal of Quantum Chemistry 32 (1987), S. 15-29 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An attempt is made to analyze the present state of first-principles methods used in solid state theory to elucidate where these methods derive their strength and why they may be expected to gain even more predictive power in the near future. The latter will depend on the success of recently contemplated improvements. As regards the ground state properties of solids, there are two - in principle -  rigorous ways of treating the associated N-electron problem. One is based on the Hohenberg-KohnSham (HKS) theory, which maps the electronic pair correlation onto a strictly local, energy-independent potential that occurs in the associated one-particle equations. The alternative approach, which will not be discussed in this paper, is connected with determining quasi-particle amplitudes from the Dyson equation, where the information on the electronic pair correlation is absorbed into a nonlocal energy-dependent self-energy operator.Distinctly different from HKS theory, which only applies to ground states, the quasi-particle scheme lends itself to describe excitations (e.g., interband transitions) just as well. We shall furthermore discuss a generalization of the HKS theory that explains why naive extensions of this approach to excited states have been relatively successful in a variety of cases.
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    International Journal of Quantum Chemistry 31 (1987), S. 73-80 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A band intensity alternation has been observed in the absorption spectra to the à 1A2″ state of NH3 and ND3 cooled in supersonic expansions. The nuclear statistical explanation for this interesting effect is given here.
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    International Journal of Quantum Chemistry 31 (1987), S. 113-117 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a recent paper [5], Ford, Lewis, and O'Connell proposed a remarkable formula for the change in the free energy in terms of the susceptibility alone. This formula came out of their treatment of a quantum oscillator interacting (via dipole coupling) with a blackbody radiation field at finite temperature T. As a result, they found a modification to the Planck formula due to finite line width and a positive energy shift which is of quantum electrodynamical origin.I shall show in this paper that the above result is a general one, not specific to the problem considered, and whose essence can already be traced to the early works of van Kampen and Liftshitz on the theory of van der Waals forces, Maradudin et al. on point defects in lattices, and Mahanty and others on dispersion forces. The above formula can be deduced directly using the argument theorem in theory of contour integration.
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  • 86
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Cellular spin resonance (CSR) or electrorotation is the spinning of cells or other particulate matter in rotating electric fields. The spin rate of the (bio)particle varies markedly with the applied frequency and often is seen to have rather sharp maxima as the frequency is varied. In certain frequency ranges, living cells often are observed to undergo a striking inversion of their spin rate and then spin counter-clockwise (CCW) while the direction of rotation of the applied electric field is clockwise (CW).The CSR spectra are presumably due to dipolar interactions with the applied field, as are the spectra obtained by straightforward dielectrophoresis (DEP) techniques. The two spectra, however, differ radically in the low frequency ranges (below about 1 MHz). It is our objective to explain this apparently anomalous behavior.We believe that the anomaly appears primarily because one is comparing rotational with translational force responses. In the DEP techniques, the simpler translational force arising from the comparative polarizability of cell versus medium (water) gives a straightforward measure of the differential polarizability owing to volume and surface effects pro forma. In the CSR techniques the spin rate reflects the torque on the cells and hence emphasizes polarization at the outer periphery of the cells rather than that of the average overall polarizability.The problem is considered in terms of a living or dead cell rotating with an angular velocity Ω in a fluid medium of viscosity η when it is subject to an electric field rotating at angular frequency ω. It is observed in many experiments that Ω ≪ ω, and also that the sign of Ω for the same cell can change from CW to CCW and back to CW as the applied frequency ω of the CW electric field is increased. Moreover, the sign and magnitude of the CSR spectra differ for living and dead cells. All of these experimental results can be explained quantitatively by using Maxwell's equations and the dielectric properties of a lossy dielectric sphere in an ionically conductive dielectric fluid.
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    International Journal of Quantum Chemistry 32 (1987), S. 105-122 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The fermion unitary group formulation (UGF) of many-body theory is based on the unitary group U(2n) where n is the number of freeon orbitals. This formulation, which conserves particle-number but not spin, is isomorphic to the particle-number-conserving, second-quantized formulation (SQF). In UGF we derive the familiar diagrammatic algorithm for matrix elements, M(Y) = (-1)H+L where H and L denote the numbers of hole lines and loops in the diagram D(Y) of M(Y). The unitary group derivation is considerably simpler than is the conventional, second-quantized derivation that employs time-dependence, Wick's theorem, normal-order, and contractions. In neither fermion UGF nor SQF is spin conserved. We carry out in UGF the spin-projection (symmetry adaptation to SU(2)) of the fermion vectors and obtain with a spin-free Hamiltonian the same matrix elements as with the freeon UGF (part 24 of this series). The fermion unitary group formulation for a spin-free Hamiltonian should be regarded as an alternate path to spin-free quantum chemistry.
    Type of Medium: Electronic Resource
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  • 88
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    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 149-164 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Hartree-Fock (HF) equations for the (He)2 system are solved using a suitable exchange perturbation technique. The HF interaction energy is then obtained directly from a rapidly convergent iteration procedure. The method remains convergent for short interatomic distances, where the interaction energy surpasses the energy of intraatomic excitations. The fast convergence of the method is a result of the proper treatment of the exchange-deformation effects. In the region of the van der Waals minimum, these effects account for 50% of the HF deformation energy.
    Additional Material: 5 Tab.
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  • 89
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 249-264 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The algorithm to derive symmetry orbitals for one-electron band-structure calculations of one-dimensional crystals presented by Božović and Delhalle [1] has been applied to extend the explicit formulation of symmetry-adapted linear combinations of Bloch sums to any line group isogonal to Cn or Cnv. We also point out how the transformation matrices that block-diagonalize the one-electron eigenvalue equation H(k)C(k) = S(k)C(k)E(k) can be determined. Finally, the extended-Hückel block-matrix dimensions of some typical quasi-one-dimensional transition metal compounds have been tabulated in order to give a measure for computational savings achievable by this technique.
    Additional Material: 2 Tab.
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  • 90
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 511-516 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The SCF method for the calculation of energy levels of triatomic molecules is applied using the hypervirial perturbative procedure for solving the coupled equations. This treatment allows to obtain in a recursive way the energy corrections and the expectation values required in the SCF treatment, avoiding the explicit calculation of the wave functions. A numerical application is made to the SO2 and O3 molecules, comparing our results with those obtained by other methods.
    Additional Material: 2 Tab.
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  • 91
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 517-545 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Similarity measures between pairs of molecular wave functions are described. They are based on the geometrical structure of the LCAO-MO framework and upon multivariate analysis ideas. The theoretical framework is presented, and formulae for some integrals needed are given. Two main measures, distance and correlation coefficients, are used. Distance and correlation matrices induce relationships in the whole MO set, which can be depicted through minimal spanning tree techniques. Furthermore, principal component analysis allows a two-dimensional visualization of the Mo manifold geometrical relationships. Various examples are given in order to obtain information on how basis set, environment, excitation, bending, stretching, and electronegativity affect the induced order. For this purpose “ab initio” SCF-LCAO-MO calculations with double- and single-zeta quality basis sets have been used for various simple molecular structures: H2O, NH3, CH4, N2, O2, C2, NO, CN, and CO. The results obtained can open the way to LCAO-MO taxonomy. Using this information, other areas of interest are connected with similarity measures (SCF and CI, localization procedures, etc.), proving in this manner their potential utility.
    Additional Material: 8 Ill.
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  • 92
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 547-547 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 93
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 663-667 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The upper and lower bounds of a harmonic oscillator with an octic perturbation are studied with the use of renormalized inner projection. It is shown that this relatively simple technique works even in the infinite coupling constant limit. Symbolic computation is very convenient and useful in these types of problems, where only a finite number of operations are required.
    Additional Material: 1 Tab.
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  • 94
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 705-710 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The previously proposed local variational algorithm for generating diabatic states from adiabatic states is tested numerically for the simplest case of avoided potential curve crossing in a diatomic. The obtained results fully agree with those found by an interpolation scheme.
    Additional Material: 1 Ill.
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  • 95
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    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. v 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 96
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 9-14 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the study of cancer as a complicated disease caused by many combinations of various factors, it may be of importance to consider also any possible changes of the water structure in the environment of the malignant cells. The occurrence of such changes has been established experimentally, for example, by a study of the magnetic properties of water by nuclear magnetic resonance (NMR) spectra. It has been found that the protons in the water surrounding malignant cells have a much longer spin-lattice relaxation time than the protons in the water around normal cells. This indicates that the water molecules in tumor cells are less structured and able to move more freely than in normal tissues, where, due to the effect of hydrogen bonding, water occurs mainly as five- or six-membered rings. This prolongation of the proton spin-lattice time may be an important factor in cancer, but further studies are necessary before one can decide with certainty whether it would be possible to use this effect to diagnose malignant transformations at an early stage. It is suggested that changes in the magnetic properties of water in a malignant tumor during chemotherapy and other treatments be monitored as control tools.
    Additional Material: 2 Ill.
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  • 97
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
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  • 98
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 47-56 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The geometries of all 12 complexes in which HF, HCl, or HBr is paired with NH3, NMeH2, NMe2H, or NMe3 are optimized with the MINI-1 basis set. As the basicity of the amine is increased via progressive methylation, or as the proton affinity of the halide is diminished, the proton equilibrium position shifts toward the nitrogen, but in no case is this shift far enough to classify the complex as an ion pair. When the effects of a polarizable medium are included via the SCRF formalism, the shift of the proton toward the nitrogen is enhanced by increases in the solute-solvent interaction such that relatively modest coupling leads to complexes of ion-pair type. In all cases, complexes containing HBr are the most sensitive to either the basicity of the amine or the influence of the medium whereas the HF analogs are affected very little.
    Additional Material: 2 Ill.
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  • 99
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In heme proteins, the axial ligands bound directly to the iron are important modulators of biological function. A common spectroscopic technique used to detect the presence of heme units with oxygen-containing ligands, is the broadening of the electron spin resonance (ESR) spectrum by hyperfine interactions with unpaired spin density in 17O-enriched systems. To be useful as a means of identifying such ligands, there must be a measurable level of unpaired spin density on the oxygen ligand. In this study, we have used the semiempirical INDO/ROHF quantum mechanical method to calculate and compare the spin density localized on the axial oxygen ligand in the active site of four model heme proteins, Metmyoglobin, cytochrome c peroxidase (CCP), P450cam, and catalase. In particular, we have attempted to determine for which systems the results of such an experiment would be a reliable indicator of the presence of water or other types of oxygen-containing ligands. Using the MetMb system, for which such broadening has been observed, to determine a threshold value of spin density on the oxygen atom needed to detect broadening of the ESR spectra, we have found one-hundredth less spin on the water ligand in P450cam, thus explaining the observed lack of broadening in the ESR spectra of the low spin resting state. In addition, we predict that the catalase system would, in principle, exhibit 17O broadening of its ESR spectra but that CCP would not. Finally, given the similarity of CCP and HRP (horse radish peroxidase), our calculations suggest that the absence of broadening in the ESR spectra of HRP does not rule out the presence of water as a sixth ligand.
    Additional Material: 3 Tab.
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  • 100
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 111-126 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Cumulative atomic multipole moments (CAMM) have been calculated for normal, rare, and protonated forms of adenine, thymine, guanine, cytosine, uracil, and 2-aminopurine from ab initio LCAO-MO-SCF wave function obtained from all-valence modpot basis set with ab initio effective core potentials. CAMM may be used in calculating electrostatic molecular potentials, electric fields, field gradients, etc. as well intermolecular interaction energies. Additionally, we derived analytic expressions for the point charge assemblages representing simultaneously all atomic and molecular moments. Convergence of atomic versus molecular multipole expansion has been illustrated in the Appendix.
    Additional Material: 5 Ill.
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