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  • Electronic Resource  (697)
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  • 1995-1999  (697)
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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Rheumatology international 15 (1995), S. 89-93 
    ISSN: 1437-160X
    Keywords: SLE Lupus ; BBV transformation ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Epstein-Barr-virus (EBV)-transformed lymphoblastoid B-cell lines were generated from peripheral blood lymphocytes of 55 patients with systemic lupus erythematosus (SLE) and 44 healthy relatives. All donors have previously been extensively characterized with regard to clinical, serologic, and genetic parameters. Here, peripheral blood lymphocytes and lines were characterized for cell surface antigens. Furthermore, autoantibody production and proliferation rate of the cell lines were monitored. A significant difference between patients and relatives was the lower proliferation rate of EBV-transformed cell lines of the SLE patients. All SLE cell lines are available for interested researches and can be obtained from the European Cell Bank, Salisbury, UK.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1432-1440
    Keywords: Adrenergic receptors ; Human genetics ; Restriction fragment length polymorphism ; Chromosome mapping ; Linkage ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract We have genetically mapped the genes encoding four human adrenergic receptors (ARs) of subtypes α1C, α2A, α2B, and β1, which are prototypic G protein coupled receptors that mediate the physiological effects of neurotransmitters, hormones, and drugs. We placed these genes onto the Cooperative Human Linkage Center (CHLC) and Genethon framework maps, within confidence intervals with greater than 1000∶1 odds. With multipoint analysis the α1C gene (locus ADRA1C) mapped to the interval between NEFL and D8S283; α2-C4, the gene encoding the α2C AR (locus ADRA2C), mapped to the interval between D4S126 and D4S62; and the α2-C10 (α2A AR)/β1 haplotype (loci ADRA2A/ ADRB1) mapped to the interval between D10S259 and D10S187. A fifth AR gene, β2, yielded significant LOD scores with markers on the long arm of chromosome 5; however, this locus (ADRB2) could not be mapped to any specific interval with odds of greater than 1000∶1. The two AR genes that are completely linked, α2-C10 and β1, were oriented on their shared 225-kb genomic fragment relative to the direction of transcription, with β1 being 5′ to α2-C10. The positioning of these genes on high-density framework maps allows them to be tested as candidates in a spectrum of diseases that might involve AR dysfunction.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-1440
    Keywords: Atherosclerosis ; Hypertension ; Type 2 diabetes ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract In the search for new risk factors for diabetic macroangiopathy the insertion/deletion (I/D) polymorphism in the angiotensin-converting enzyme gene was studied in 237 consecutive patients (125 men and 112 women) with non-insulin-dependent diabetes. The female population showed an excess of ischemic electro-cardiographic changes or definite myocardial infarctions in the patients homozygous for the deletion [D/D; odds ratio (OR) 2.8; 95% confidence interval (CI) 1.4–5.3] and in the insertion/deletion heterozygotes (I/D; OR 1.8; CI 1.1–3.1) compared with the patients homozygous for the insertion (I/I). In the total series coronary heart disease, cerebrovascular disease, and claudication were more often observed in the patients with I/D (OR 1.5; CI 1.0–2.2) or the D/D genotype patients (OR 1.7; CI 1.1–2.6) than in those with the genotype I/I. The systolic blood pressure was lower in patients with genotype I/I (138±19 mmHg) than in those with the genotype I/D (149±22 mmHg) or D/D (150±21 mmHg; P〈0.02). The prevalence of hypertension and the median urinary albumin excretion rate also tended to be lowest in the I/I genotype patients. Multiple logistic analysis revealed that in women the angiotensin-converting enzyme D/D genotype is independently associated with coronary heart disease. Our findings suggest that variation at the angiotensin-converting enzyme gene locus is one of the factors involved in the predisposition of diabetic patients to the development of arterial disease and hypertension.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1432-0533
    Keywords: Primitive neuroepithelial tumor ; Desmoplastic small cell tumor ; Brain tumor of infancy Immunocytochemistry ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract We describe a case of a desmoplastic brain tumor which was initially resected from the right fronto-temporal region in a 2 year-old boy. This nodular, calcified tumor was vascularized by the internal carotid artery and the middle meningeal artery branches. Grossly, it contained several mucoid cysts. Light microscopy showed cords or nests of small cuboidal cells surrounded by a loose connective tissue and desmoplasic areas containing fibers and spindle cells. The cuboidal cells expressed epithelial, neuronal and neuroendocrine markers. Some foci of spindle cells showed glial differentiation. The tumor recurred 16 months later and displayed some characteristics of the small cell neuroepithelial component, mitoses being conspicuous. Electron microscopy revealed undifferentiated clear cells, some containing neurosecretory granules. Karyotyping demonstrated the following formula: 〈 15 〉 46, t(8;11) (a13; q11). The chromosome 11 breakpoint was different from that described in Ewing's sarcoma. This isolated translocation has not been previously reported to our knowledge. These unusual features lead us to report this case and to discuss its pathogenesis.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Sexual plant reproduction 8 (1995), S. 129-132 
    ISSN: 1432-2145
    Keywords: Sex control ; Disomic segregation ; Dioecy Kiwifruit ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The sex segregation ratio was checked in bi-parental families of Actinidia deliciosa (2n=6x=174) obtained by crossing four females (A12, Mo3, Br4, Hw1) with two males (T2, M1) and one fruiting male (M3h, subandroecious) according to a factorial mating design. The M3h fruiting male was also selfed. The sex ratio was checked in maternal families of A. kolomikta (2n=2x) and A. chinensis (2n=2x) as well as in A. deliciosa. Seedlings of both diploid species took 3–4 years to progress beyond juvenility, whereas a noticeable number of seedlings from biparental crosses of A. deliciosa involving A12 and Hw1 as seed parents were still non-flowering after seven growing seasons. Open-pollinated families of both diploid and hexaploid species as well as most families from biparental crosses showed a sex segregation ratio approaching 1∶1. Subandroecious lines with different degrees of ovary and pistil development appeared in proportions of 0–4.2%, depending on the cross, but only 6 of the 2567 male vines checked were capable of setting fruit. No case of self-fertility or apomixis was detected among 1866 bagged female vines. Selfed M3h progenies gave only female and male phenotypes in a ratio of 1 female to 3 males. No off-type vines were found among these progenies. The same disomic sex segregation ratio seems to be operating at different ploidy levels in the genus Actinidia. Since selfed fruiting males produced both female and male individuals, the male sex appears to be the heterogametic one. Such evidence indicates that a monofactorial system based on one or more linked genes or on an X/Y chromosome set must be controlling sex expression. How a monofactorial sex-determining mechanism could operate in polyploids to give a 1∶1 female: male ratio is discussed. Minor modifying gene(s) seem to be responsible for the feminization of males, and their expression appears enhanced by environmental conditions. Masculinizing gene(s) seem to be lacking in female genotypes.
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  • 6
    ISSN: 1432-2072
    Keywords: Opioid ; Genetics ; Self-administration ; CXBK/ByJ ; Reinforcement
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract It is commonly thought thatμ-receptors play an important role in the reinforcing effects of opioids. In the present study, inbred strains widely divergent in CNS opiate receptor densities were used to investigate the influence of genetic variation in receptor concentration on opioid-reinforced behavior. In particular, the CXBK/ByJ mice were used as an investigative tool because of their significantly lower number of CNSμ opioid receptors. The behavioral pharmacology of opioids in theμ-deficient CXBK/ByJ mice was compared to other commonly used inbred mouse strains, C57BL/6J and BALB/cJ, and the opiate receptor rich CXBH/ByJ mice. Operant opioid reinforced behavior, opioid-induced locomotor stimulation, analgesia and respiratory depression were investigated in all four inbred strains. To assess the acquisition and maintenance of opioid reinforced behavior, oral self-administration of the potent benzimidazole opioid, etonitazene, was determined using an operant fixed-ratio schedule of reinforcement (FR 8). Acquisition of etonitazene-reinforced behavior was established in all four strains including theμ-deficient CXBK/ByJ mice. However, there were significant genetic differences in the amount of drug intake during the maintenance of opioid-reinforced behavior and extinction behavior following vehicle substitution. For example, drug intake was significantly greater in the BK versus BH mice during the maintenance phase and an extinction burst was seen in the BH but not the BK mice following vehicle substitution. Thus,μ-receptor density may not account for individual variability in the acquisition of opioid-reinforced behavior under these conditions. Sensitivity to etonitazene-induced respiratory depression, stimulation of locomotor activity and analgesia were unrelated to drug intake during self-administration sessions across these four inbred strains. These data indicate that inherited differences in CNSμ-opiate receptor concentrations do not affect acquisition of etonitazene-reinforced behavior.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1432-2072
    Keywords: Cocaine ; Quantitative trait loci ; Seizure ; Recombinant inbred strains ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Among inbred mice, genetic factors mediate differences in sensitivity to the convulsant properties of cocaine; however, the gene(s) underlying cocaine's effects have not been identified. To help elucidate the gene(s) responsible for cocaine seizure susceptibility, we used recombinant inbred-quantitative trait loci (RI-QTL) analyses to identify chromosomal loci associated with cocaine-induced seizures. RI-QTL analyses seek to identify associations between a quantitative measure of a particular phenotype and one or more previously mapped marker genes across a panel of RI strains. This report describes an RI-QTL analysis of cocaine seizure susceptibility among 26 BXD RI strains. These strains showed a skewed, bimodal range of seizure susceptibility which could be the result of one or more modifying genes acting in concert with a major gene to influence cocaine sensitivity. Correlating the percent seizures displayed by each strain following 60 mg/kg cocaine with chromosomal marker data for these strains revealed a number of significant correlations clustered in two regions on chromosomes 12 and 6. This is the first identification of putative chromosomal loci associated with a cocaine-related phenotype and should facilitate identification of the gene(s) underlying cocaine toxicity and other cocaine-related phenotypes.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1432-1076
    Keywords: Key words Osteogenesis imperfecta ; Collagen I ; Mosaicism ; Genetics ; Recurrence risk
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Osteogenesis imperfecta (OI), a dominantly inherited connective tissue disorder, is usually caused by defects in collagen I. There is growing evidence for parental mosaicism that results in affected children born to unaffected parents. This situation poses a difficult task for the geneticist because a mosaic parent may appear clinically healthy while carrying the mutation in a fraction of her or his gonadal cells. To illustrate this problem, we report a Swiss couple whose first child was affected with severe OI. The unexpected recurrence of the disorder in the second child raised the suspicion of a recessive trait or, rather, of parental mosaicism. We identified the responsible collagen mutation in the COL1A2 gene (Gly688Ser in the α2(I)-chain) in both children and demonstrated the father to be a somatic mosaic for this mutation and to have subtle clinical signs such as soft skin and short stature that may be a result of his mosaic state.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1432-1076
    Keywords: Floating-Harbor syndrome ; Growth retardation ; Dysmorphology ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Abstract The Floating-Harbor syndrome is a growth retardation syndrome with delayed bone age, speech development, and typical facial features. The face is triangular with deep-set eyes, long eyelashes, bulbous nose, wide columella, short philtrum, and thin lips. We present an additional patient and review 16 cases from the literature. The possible phenotype in the patient's mother suggests a dominant mode of inheritance for the syndrome. Conclusion The Floating Harbor syndrome is a growth deficiency syndrome characterized by proportionate short stature, characteristic face and delayed speech development. Inheritance is possibly autosomal dominant.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    European journal of pediatrics 154 (1995), S. 654-657 
    ISSN: 1432-1076
    Keywords: Fetal development ; Brain diseases ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract We report two female siblings with the fetal brain disruption sequence. Extensive investigation of both children failed to define a definitive aetiology but clinical and laboratory findings are consistent with a hitherto unknown storage disease. We postulate that the accumulation of a neurotoxic metabolite may be responsible for the disease phenotype observed. This is the first report of recurrence of the fetal brain disruption sequence and supports the existence of a genetic form of this condition. Previous reports have emphasized possible environmental aetiologies. Infants with fetal brain disruption sequence should be investigated exhaustively and, in the absence of definitive evidence of an environmental cause, the possibility of a genetic aetiology should be considered. In some families the recurrence risk may be as high as one in four.
    Type of Medium: Electronic Resource
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  • 11
    Electronic Resource
    Electronic Resource
    Springer
    European journal of pediatrics 154 (1995), S. 654-657 
    ISSN: 1432-1076
    Keywords: Key words Fetal development ; Brain diseases ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract We report two female siblings with the fetal brain disruption sequence. Extensive investigation of both children failed to define a definitive aetiology but clinical and laboratory findings are consistent with a hitherto unknown storage disease. We postulate that the accumulation of a neurotoxic metabolite may be responsible for the disease phenotype observed. This is the first report of recurrence of the fetal brain disruption sequence and supports the existence of a genetic form of this condition. Previous reports have emphasized possible environmental aetiologies. Infants with fetal brain disruption sequence should be investigated exhaustively and, in the absence of definitive evidence of an environmental cause, the possibility of a genetic aetiology should be considered. In some families the recurrence risk may be as high as one in four.
    Type of Medium: Electronic Resource
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  • 12
    ISSN: 1432-1076
    Keywords: Key words Floating-Harbor ; syndrome ; Growth retardation ; Dysmorphology ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The Floating-Harbor syndrome is a growth retardation syndrome with delayed bone age, speech development, and typical facial features. The face is triangular with deep-set eyes, long eyelashes, bulbous nose, wide columella, short philtrum, and thin lips. We present an additional patient and review 16 cases from the literature. The possible phenotype in the patient's mother suggests a dominant mode of inheritance for the syndrome. Conclusion The Floating Harbor syndrome is a growth deficiency syndrome characterized by proportionate short stature, characteristic face and delayed speech development. Inheritance is possibly autosomal dominant.
    Type of Medium: Electronic Resource
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  • 13
    Electronic Resource
    Electronic Resource
    Springer
    Journal of neurology 242 (1995), S. 508-511 
    ISSN: 1432-1459
    Keywords: Dystonia ; Torticollis ; Blepharospasm ; Genetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The inheritance of focal dystonias was investigated in 43 families containing 43 index cases with torticollis (n = 21), blepharospasm (n = 18) and writer's cramp (n = 4). They generated a potential population of 235 first-degree relatives, and 168 out of 179 living first-degree relatives were examined. Ten relatives with dystonia were identified in ten families. Another two parents from two of the same group of ten families were affected according to the family history. The majority of the secondary cases (six patients, five siblings, and one child) were not aware of any dystonia. The tendency for affected relatives to have the same type of dystonia as index patients was observed only for torticollis. Overall, 23% of index patients had relatives with dystonia. Segregation analysis suggested the presence of an autosomal dominant gene or genes with reduced penetrante underlying focal dystonia.
    Type of Medium: Electronic Resource
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  • 14
    Electronic Resource
    Electronic Resource
    Springer
    Der Hautarzt 46 (1995), S. 394-399 
    ISSN: 1432-1173
    Keywords: Schlüsselwörter Malignes Melanom ; Genetische Instabilität ; Genetik ; Syndrom der dysplastischen Nävi ; Xeroderma pigmentosum ; Key words Malignant melanoma ; Genetic instability ; Genetics ; Dysplastic nevus syndrome ; Xeroderma pigmentosum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Summary Exposure of the skin to ultraviolet irradiation is an important risk factor for the development of malignant melanoma, with UVA possibly playing an important role. Hereditary factors are also relevant. In the dysplastic nevus syndrome a genetic instability has been shown by different methods. In xeroderma pigmentosum the DNA repair defect is thought to be responsible for the high incidence of malignant melanoma. Frequent and non-random changes in certain chromosomes have been demonstrated in melanoma cells. These might contain sequences that control melanoma growth or melanoma suppressor genes. Especially the short arm of chromosome 9 is thought to contain one of these genes. This hypothesis is supported by a genetic linkage analysis in melanoma families and the demonstration of a germ line deletion of the locus 9p21 in a patient with eight primary melanomas. Changes in known tumor suppressor genes and oncogenes have also been reported in melanoma, but no consistent sequence of genetic events is known.
    Notes: Zusammenfassung Die Exposition der Haut mit ultravioletten Strahlen ist ein wichtiger Risikofaktor für die Entwicklung eines malignen Melanoms. Möglicherweise spielt hierbei UVA-A eine besondere Rolle. Daneben sind hereditäre Faktoren von Bedeutung. Während beim Syndrom der dysplastischen Nävi eine genetische Instabilität mit verschiedenen Methoden nachgewiesen wurde, wird bei Xeroderma pigmentosum der DNA-Reparaturdefekt für die hohe Melanominzidenz verantwortlich gemacht. In Melanomzellen sind überzufällig häufig karyotypische Veränderungen in bestimmten Chromosomen gefunden worden. Diese enthalten möglicherweise Melanomwachstumsregulierende Sequenzen oder Melanom-Suppressorgene. Insbesondere der kurze Arm des Chromosoms 9 steht in Verdacht, eines dieser Gene zu enthalten. Diese Hypothese wird auch unterstützt durch eine genetische Kopplungsanalyse an Melanomfamilien und dem Nachweis einer Keimbahndeletion des Lokus 9p21 bei einer Patientin mit 8 primären Melanomen. Veränderungen an bereits bekannten Tumorsuppressorgenen oder Onkogenen sind ebenfalls in Melanomen beschrieben worden, ohne daß jedoch eine konsistente Reihenfolge von genetischen Ereignissen bekannt wäre.
    Type of Medium: Electronic Resource
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  • 15
    Electronic Resource
    Electronic Resource
    Springer
    Child's nervous system 11 (1995), S. 453-455 
    ISSN: 1433-0350
    Keywords: Myotonic ; Dystrophy ; Muscle disease ; Genetics ; Case report
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract A large Sicilian kinship in which myotonic dystrophy (DM) affected spanning four generations is presented. The pedigree clearly illustrates the phenomenon of anticipation, and illustrates that this phenomenon is more marked when transmission occurs through an affected female rather than an affected male. The pedigree is interpreted in light of recent genetic advances in DM. Neurosurgeons and neurologists should consider a diagnosis of DM when asked to evaluate a floppy infant with enlarged lateral ventricles, and should be aware of special features regarding its inheritance pattern.
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  • 16
    ISSN: 1432-5233
    Keywords: Maturity-onset diabetes of the young (MODY) ; Genetics ; Diabetes mellitus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Genetic linkage studies of families with earlyonset type 2 diabetes have facilitated the identification of diabetes-susceptibility genes. In order to assess the feasibility of using linkage approaches to identify genes responsible for the development of type 2 diabetes in Japanese subjects, we examined our clinical records for multigenerational families suitable for genetic studies. We identified 16 families in which at least one subject was diagnosed with type 2 diabetes before 25 years of age. Seven of these families had a pattern of inheritance consistent with a diagnosis of maturity-onset diabetes of the young (MODY) and nine families showed a complex pattern of inheritance of type 2 diabetes with transmission of diabetes-susceptibility genes from both parents. The glucokinase and mitochondrial tRNALeu(UUR) genes were screened for mutations in at least one affected subject from each family in order to assess the contribution of mutations in these genes to the development of the diabetes. No mutations were found, which suggests that the diabetes in these families resulted from mutations in other genes.
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  • 17
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 91 (1995), S. 639-646 
    ISSN: 1432-2242
    Keywords: Gene introgression ; Genetics ; Linkage ; Taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The wild tetraploid (2n=28) oat species Avena magna and A. murphyi have been domesticated by having been transferred from the common oat, A sativa (2n=42), the characteristics of non-shedding spikelets glabrous and yellow lemma, and reduced awn formation. Domestication has been achieved by crossing the common oat with either of the tetraploid species and then backcrossing the pentaploid hybrids with pollen of the tetraploid wild parent. Among the BC plants obtained only a few produced some seeds. Fertile tetraploids exhibiting the domesticated syndrome have been selected for in the F2 generation. Although morphologically they were almost indistinguishable from the common oat, they were tetraploids. Wild x domesticated A. magna hybrids were vigorous and fertile. They retained their spikelets at maturity, lemma color and pubescence were intermediate between the parental lines, and awns were formed only on the lower floret of the spikelet. Each of these characteristics segregated in a 3∶1 fashion, indicating single gene control, as in the common oat. These four characteristics formed a linkage group in one F2 family and two linkage groups in the other two families. The usefulness of the domesticated tetraploids for oat research and production has been discussed. Taxonomically, the domesticated tetraploids were ranked as subspecies: A. magna ssp. domestica, and A. murphyi ssp. rigida.
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  • 18
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 90 (1995), S. 707-713 
    ISSN: 1432-2242
    Keywords: Mineral stress ; Nutrient efficiency ; Aluminium tolerance ; Inheritance ; Genetics ; Breeding
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The Brazilian tropical adapted soybeans contains, in addition to superior morphological characters, genetic factors for tolerance to cultivation in acidic, mineral-stressed soils. However, the selection process for these hindrances has been empirical, and information on the genetics of mineral element uptake by the plant is necessary. The objective of this investigation was to identify the mode of inheritance for the absorption of phosphorus, potassium, calcium, magnesium, iron, aluminium, manganese, zinc and copper in a 9 × 9 diallel cross. General combining ability (GCA) was higher than specific combining ability (SCA), with the exception of copper, manganese and zinc, indicating predominantly additive effects. The ratios of GCA/SCA varied between 3.4 (calcium) and 8.5 (magnesium). The regression of covariance (Wr) on variance (Vr) showed that the additive-dominance model explained the genetic differences in this germ plasm. However, the detection of overdominance could be related to possible heterozygosity in the parental varieties for mineral absorption. Broad-sense heritability values were higher than narrow sense heritability values for aluminium, iron, potassium, calcium and magnesium, being in the range of 67.9–86.9% and 42.0–56.6%, respectively. This is an indication that soybeans can be further improved to efficient utilisation of nutrients and to tolerate toxic factors in the soil.
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  • 19
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 90 (1995), S. 146-149 
    ISSN: 1432-2242
    Keywords: Capsicum chinense ; Resistance gene ; Genetics ; Pepper ; Tomato spotted wilt virus ; Tospoviruses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Pepper (Capsicum chinense Jacq.) has been reported to be an important reservoir of resistance genes to tomato spotted wilt virus (TSWV). The genes for TSWV resistance present in three C. chinense lines (‘PI 152225’, ‘PI 159236’ and ‘Panca’) were investigated for allelism. All resistant lines were crossed with each other. Parents, F1, backcrosses and F2 populations (including reciprocals) developed from those crosses were mechanically inoculated with a highly virulent TSWV isolate. Susceptible C. annuum cv ‘Magda’ was used to check inoculum virulence. Fifty plants of the F1 hybrids; ‘Magda’ x ‘PI 152225’, ‘Magda’ x ‘PI 159236’, and ‘Magda’ x 'Panca, were also inoculated with the TSWV isolate. The resistance response in all C. chinense sources was associated with a localized, hypersensitive-like reaction that was phenotypically expressed as a prompt formation of large local lesions accompanied by premature leaf abscission. All F1 generations presented a final score of resistant; indicating that the expression of resistance to TSWV is conditioned by a dominant gene regardless of the source. The absence of segregation for resistance to TSWV that was observed in all generations of the crosses between C. chinense lines indicated that either a tightly linked group of genes exists or that the resistance is governed by the same single major gene (probably the already described Tsw gene). Previous reports have indicated that the Tsw gene is not effective against tospovirus members of serogroup II, i.e. tomato chlorotic spot virus (TCSV) and groundnut ring spot virus (GRSV). In the assay described here, all of the C. chinense lines showed, after mechanical inoculation, an identical susceptibility response to the TCSV and GRSV isolates.
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  • 20
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 90 (1995), S. 380-388 
    ISSN: 1432-2242
    Keywords: Genetics ; Breeding ; Sorghum bicolor Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The objective of this study was to use restriction fragment length polymorphisms (RFLPs) to determine the genetic location and effects of genomic regions controlling plant height in sorghum. F2 plants (152) from the cross CK60 x PI229828 were used. Genomic and cDNA clones (106) identified 111 loci distributed among ten linkage groups covering 1299 cM. Interval mapping identified four regions, each in a separate linkage group. These regions may correspond to loci (dw) previously identified by alleles with qualitative effects. Also, these regions identified in sorghum may be orthologous to those previously reported for plant height in maize. Gene effects and gene action varied among genomic regions. In each region, PI229828 alleles resulted in increased plant height. Each region accounted for 9.2–28.7% of the phenotypic variation. Positive, additive effects ranged from 15 to 32cm. Tallness was dominant or overdominant and conferred by alleles from PI229828 for three quantitative trait loci (QTL). At the fourth QTL, PI229828 contributed to increased plant height, but short stature was partially dominant. One digenic interaction was significant. The presence of a PI229828 allele at one region diminished the effects of the other region. A multiple model indicated that these four regions collectively accounted for 63.4% of the total phenotypic variation. The utility of this information for germplasm conversion through backcross breeding is discussed.
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  • 21
    Electronic Resource
    Electronic Resource
    Springer
    Journal of industrial microbiology and biotechnology 14 (1995), S. 355-364 
    ISSN: 1476-5535
    Keywords: Transformation ; Fungi ; Yeast ; Genetics ; Biotechnology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Summary The genetic investigation of fungi has been extended substantially by DNA-mediated transformation, providing a supplement to more conventional genetic approaches based upon sexual and parasexual processes. Initial transformation studies with the yeastSaccharomyces cerevisiae provided the model for transformation systems in other fungi with regard to methodology, vector construction and selection strategies. There are, however, certain differences betweenS. cerevisiae and filamentous fungi with regard to type of genomic insertion and the availability of shuttle vectors. Single-site linked insertions are common in yeast due to the high level of homology required for recombination between vectored and genomic sequences, whereas mycelial fungi often show a high frequency of heterologous and unlinked insertions, often in the form of random and multiple-site integrations. While extrachromosomally-maintained or replicative vectors are readily available for use with yeasts, such vectors have been difficult to construct for use with filamentous fungi. The development of vectors for replicative transformation with these fungi awaits further study. It is proposed that replicative vectors may be inherently less efficient for use with mycelial fungi relative to yeasts, since the mycelium, as an extended and semicontinuous network of cells, may delimit an adequate diffusion of the vector carrying the selectable gene, thus leading to a high frequency of abortive or unstable transformants.
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    Environmental biology of fishes 43 (1995), S. 1-27 
    ISSN: 1573-5133
    Keywords: Conservation ; Extinction ; Rarity ; Biodiversity ; Breeding guilds ; Endemism ; Speciation ; Habitat degradation ; Environmental management ; Invasive fishes ; Genetics ; Ecology ; Stenotopy ; Captive propagation ; Legislation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The conservation status and factors threatening fishes worldwide are reviewed in order to introduce a series of one-page articles on ‘Threatened fishes of the world’, and to encourage the incorporation of information on threatened fishes into international conservation programmes. Information on fish extinction and threat rates are compared with those of other animal groups, and the unique characteristics of fish conservation problems are highlighted. At present 979 species of fishes are listed as threatened in the IUCN Red List and at least 36 species and three subspecies are listed as recently extinct. It is argued that these figures are probably gross underestimates and that they may mislead conservation authorities and resource users about the seriousness of the situation. Freshwater fishes may be the most threatened group of vertebrates after the Amphibia. Urgent action is required to save many narrowly endemic, stenotopic species from extinction, especially in Africa, Asia and South America. The conservation of common species that drive essential ecological processes is also important. Anthropogenic pressures, especially habitat degradation, the introduction of invasive species and pollution, on inland and coastal waters are particularly severe and many major fish communities are threatened with elimination throughout the world. The conservation of marine fishes is complicated by the fact that it is difficult to ascertain their rarity. The importance of the retention of genetic variation is highlighted, and both orthodox and innovative conservation measures are encouraged. Further research on minimum viable populations, genetics, and the factors that cause fishes to become vulnerable to extinction, is urgently required.
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  • 23
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    Theoretical medicine and bioethics 16 (1995), S. 347-373 
    ISSN: 1573-1200
    Keywords: Genetics ; human research ; adolescence ; child ; informed consent ; decision making ; medical ethics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Philosophy
    Notes: Abstract The participation of adolescents in genetic research engenders unusual problems concerning the nature of their informed consent. In this study we analyze 70 consent documents collected from genetics investigators in the United States who conduct research with children and adolescents. We find that many consent documents do not reflect either the current or the developing ethical and legal standards for research with adolescents and that in many cases the documents are simply confusing or unclear. We make recommendations for change to reflect more adequately the changing perspective concerning the autonomous decision-making capacity of adolescents.
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  • 24
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    International Journal of Quantum Chemistry 53 (1995), S. 309-319 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The use of effective core potentials in the calculation of the geometrical parameters of the ferrocene molecule and its heavier analogs is reported. It is shown that a critical factor in these calculations is the efective core-core (ECC) potential and, in the absence of ECCs for first-row atoms that are involved in short bonds, calculations of the geometrical parameters are not reliable. Good agreement with experimental geometries may be obtained by using the Los Alamos ECPs for atoms of the second and higher rows of the periodic table at the MP2 level. DFT calculations have been performed and found to give numerical results comparable to MP2 in the same basis. © 1995 John Wiley & Sons, Inc.
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  • 25
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    International Journal of Quantum Chemistry 53 (1995), S. 431-436 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this article, we report an efficient computational procedure for electron scattering matrix elements in the previously developed cubic-grid Gaussian basis sets. The Green function matrix elements derived for the cubic-grid basis set are simpler and easier to calculate than are those available in the literature for conventional Gaussian basis sets. Special features of the cubic-grid basis sets may also be exploited for a very efficient computation of Coulomb and exchange integrals. Inelastic scattering amplitudes for vibrational excitations may be efficiently calcualted in the harmonic approximation by numerical differention of the T-matrix elements. © 1995 John Wiley & Sons, Inc.
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  • 26
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    International Journal of Quantum Chemistry 53 (1995), S. 451-454 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 27
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    International Journal of Quantum Chemistry 53 (1995), S. 437-450 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Previously developed cubic-grid basis sets of various sizes were used for the calculation of cross sections for elastic and inelastic electron scattering by the He and Ne atoms and the H2O molecule by the T-matrix expansion method. The aim was to test the invariance of calculated cross sections with respect to the translation of the target molecule and to examine the effect of basis-set size on the results. We also present a simple procedure for accounting for long-range interactions from the part of space that lies outside the volume that contains the cubic-grid basis set. © 1995 John Wiley & Sons, Inc.
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  • 28
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    International Journal of Quantum Chemistry 53 (1995), S. 455-456 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 29
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    International Journal of Quantum Chemistry 53 (1995), S. 627-633 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Atomic charge and momentum densities of 91 atoms (He—U) are classified in terms of their L1, L2, and entropic measures of distance from the densities of the preceding atoms. The relationship between these distances and the first ionization energies is also considered. © 1995 John Wiley & Sons, Inc.
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  • 30
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    International Journal of Quantum Chemistry 53 (1995), S. 635-649 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The subject of this article is the self-consistent-field (SCF) treatment of low-lying molecular vibrations in molecules subject to solvent effects and light atom migration. The analyses use a Cartesian Gaussian basis and Gaussian functional expansions of potential energy operators. The objective of the work was to establish approximate and practical methods of analysis of vibrational degrees of freedom in molecules that build on and compare well with the highly accurate treatments of vibrations in small molecular systems of the past decade. An application to a system in which hydrogen bonding contributes the major anharmonic effect illustrates the method. © 1995 John Wiley & Sons, Inc.
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  • 31
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    International Journal of Quantum Chemistry 53 (1995), S. 663-677 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This article presents methods for computing matrix elements with Cartesian Gaussian wave functions of potential energy operators that depend on functions of the form (r-r0)n exp[-a(r - r0)] as well as matrix elements of the class of polynomial many-body potentials developed by Murrell et al. The matrix elements arise in the analyses of anharmonic vibrations in molecules. © 1995 John Wiley & Sons, Inc.
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  • 32
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    International Journal of Quantum Chemistry 55 (1995), S. 347-359 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The extension of the PPP Hamiltonian for alternant cyclic polyenes to noninteger values of the pseudomomentum by imposing modified boundary conditions is discussed in detail. It is shown that a computer program for periodic boundary conditions can be easily adapted to the new boundary conditions. Full CI computations are carried out for some low-lying states of the PPP model of altemant cyclic polyenes (CH)N, (N even) at half-filling. The energy values obtained by using periodic (Bloch) and antiperiodic (Möbius) orbitals are used to perform energy extrapolations for N → ∞. © 1995 John Wiley & Sons, Inc.
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  • 33
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    International Journal of Quantum Chemistry 55 (1995) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 34
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    International Journal of Quantum Chemistry 55 (1995), S. 367-376 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: General formalism for evaluation of multiparticle integrals involving J̌2 and J̌z operators over explicitly correlated Cartesian Gaussian functions is presented. The integrals are expressed in terms of the general overlap integrals. An explicitly correlated Cartesian Gaussian function is a product of spherical orbital Gaussian functions, powers of the Cartesian coordinates of the particle, and exponential Gaussian factors, which depend on interparticular distances. This development is relevant to both adiabatic and nonadiabatic calculations of energy and properties of multiparticle systems. © 1995 John Wiley & Sons, Inc.
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  • 35
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    International Journal of Quantum Chemistry 55 (1995), S. 377-392 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The molecular g-tensors for the molecules NO2, CO2-, C3H5, H2CO+, and NF3+ are calculated at the unrestricted Hartree-Fock (UHF) level using the Rayleigh-Schrödinger perturbation approach. All one-electron terms have been evaluated, including the relativistic mass correction, the one-electron spin-Zeeman gauge correction, and a second-order term involving the spin-orbit coupling and the orbital-Zeeman interaction. The relative importance of the first-order terms is found to be quite substantial. For first-row molecules, their total contribution is often of the same order of magnitude as of the second-order contribution, in some instances even larger. A study on the basis-set dependence of these g-tensors has been conducted. At this level, the most important basis-set criterion is shown to be a satisfactory description of the valence regions. Finally, the gauge dependence of these g-tensor calculations has been systematically studied. This dependence seems to be substantially reduced for basis sets which include polarization functions. © 1995 John Wiley & Sons, Inc.
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  • 36
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    International Journal of Quantum Chemistry 55 (1995), S. 411-417 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A scaling procedure is used for the force constants generated by the SINDO1 method in internal coordinates to achieve better agreement with experimental frequencies of molecules. The procedure is subsequently used to calculate frequency shifts for adsorbed molecules. The results for CO2 and CO adsorption at NaCl cluster surfaces are in good agreement with experimental data. © 1995 John Wiley & Sons, Inc.
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  • 37
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    International Journal of Quantum Chemistry 55 (1995), S. 393-410 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio self-consistent-field calculations are reported for electronic states of beryllium clusters comprised of 93, 105, 111, and 123 atoms. The respective clusters correspond to coordination shells 12-15 of a central Be atom with internuclear separations derived from the lattice constants of the bulk metal. Ab initio effective core potentials have been employed to replace the 1 s electrons, thereby reducing the complexity of the calculations. In addition, use of the full D3h point group symmetry of the clusters results in a substantial reduction of the numbers of two-electron integrals that must be computed and processed. Binding energies, orbital energies, electric field gradient, nuclear-electrostatic potential, diamagnetic shielding constant, second moments, and Mulliken populations are calculated for selected electronic states. Calculated binding energies when compared among the different clusters as well as to smaller and larger fragments from earlier studies provide evidence for the onset of convergence to the Hartree-Fock limit of the bulk. Lowest-state ionization potentials are consistently above and agree to within 14% of the experimental workfunction. The net charge on the central beryllium atom decreases toward zero. The variability of observed bulklike behavior for the different properties indicates that the transition between cluster and bulklike behavior is not sharp and depends on the quantity of interest. © 1995 John Wiley & Sons, Inc.
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  • 38
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    International Journal of Quantum Chemistry 55 (1995) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 39
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    International Journal of Quantum Chemistry 55 (1995), S. 419-427 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The discrete variable representation method (DVR) is applied to the calculation of the J = 0 vibrational energy levels of the ground electronic state of nitrogen dioxide, a molecule which shows a large amplitude bending vibration. The Hamiltonian is expressed in Johnson hyperspherical coordinates and developed on a DVR basis set for each coordinate. A successive diagonalization-truncation method is applied which gives accurate values for the energy levels up to ≃ 7000 cm-1. © 1995 John Wiley & Sons, Inc.
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  • 40
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    International Journal of Quantum Chemistry 55 (1995), S. 429-439 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A procedure for finding transition states ( TS) that does not require the evaluation of the second derivatives during the search is proposed. The procedure is based on connecting a series of points representing products Pi and reactants Ri and taking conservative steps along the difference vector from Pi toward Ri and from Ri toward Pi until the two points coalesce. Although the points Po and Ro represent the product and reactant specifically, other Pi and Ri are determined by minimization in hyperplanes perpendicular to Pi -1 and Ri-1. We apply this technique to six well-known potential functions and compare these results with those obtained from other well-known procedures. © 1995 John Wiley & Sons, Inc.
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  • 41
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    International Journal of Quantum Chemistry 55 (1995), S. 441-457 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Potential energy curves for the ground and low-lying excited states of the AH2+ (A = Mg - Ar) dications have been calculated using high-level ab initio methods with large atomic orbital basis sets. Quasi-bound potential energy curves with local minima and deprotonation barriers have been found for most of the dications studied. The energies, tunneling lifetimes, and widths of the quasi-bound states have been calculated by numerical solution of the radial Schrodinger equation using the Numeov method. All these dications except ArH2+ have low-lying states which support quasi-bound vibrational states. The ArH2+ dication has a 2∏i potential energy curve with a minimum so shallow that it does not support any quasi-bound vibrational states. Results of our calculations are compared with previous ab initio calculations and available experimental data. © 1995 John Wiley & Sons, Inc.
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  • 42
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    International Journal of Quantum Chemistry 55 (1995), S. 469-476 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A bond-energy formula deduced by means of the Hellmann-Feynman theorem is applied to selected simple hydrocarbons. The required potentials at the nuclei are calculated with the help of large basis-set expansions including polarization functions. The carbon-carbon bond energy of ethane is evaluated at ∼ 70 kcal mol-1. The CC bond energies of ethane, ethylene, acetylene, benzene, and cyclopropane are approximately in a ratio of 1: 2.0: 3.0: 1.65 1.0. Limitations and possible improvements in future applications of this energy formula are discussed. © 1995 John Wiley & Sons, Inc.
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  • 43
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    International Journal of Quantum Chemistry 56 (1995) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 44
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    International Journal of Quantum Chemistry 55 (1995), S. 477-484 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio molecular orbital (MO) calculations with the 3-21G and 6-31G basis sets are carried out on a series of complexes of NH3 with Li+, C≡N-, LiCN, and its isomer LiNC. The BSSE-corrected interaction energies, geometrical parameters, internal force constants, and harmonic vibrational frequencies are evaluated for 15 species. Complexes with trifurcated (C3v) structures are calculated to be saddle points on the potential energy surfaces and have one imaginary frequency each. Calculated energies, geometrical parameters, internal force constants, and harmonic vibrational frequencies of the various species considered are discussed in terms of the nature of association of LiCN with ammonia. The vibrational frequencies of the relevant complexed species are compared with the experimental frequencies reported earlier for solutions of lithium cyanide in liquid ammonia. © 1995 John Wiley & Sons, Inc.
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  • 45
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    International Journal of Quantum Chemistry 55 (1995), S. 493-493 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 46
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    International Journal of Quantum Chemistry 55 (1995), S. 3-8 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: When two electronic potentials present an avoided crossing, the adiabatic approximation breaks down in the energy region near to the crossing. In particular, the correspondence between exact energy levels of the two-state system and the adiabatic levels of the lower and upper adiabatic potentials becomes ambiguous. This implies that the term “nonadiabatic effect,” used for the difference between exact and adiabatic energy eigenvalues, loses its meaning in the crossing regime unless an unambiguous way of assigning an adiabatic to an exact level is defined. This is important in order to investigate where nonadiabatic schemes, such as the generator coordinate approximation, fit in between the adiabatic approximation and quasi-exact approaches. © 1995 John Wiley & Sons, Inc.
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  • 47
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    International Journal of Quantum Chemistry 55 (1995), S. 9-22 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The application of the Σ-separation method to the calculation of multicenter two-electron molecular integrals with Slater-type basis functions is reported. The approach is based on the approximation of a scalar component of the two-center atomic density by a two-center expansion over Slater-type functions. A least-squares fit was used to determine the coefficients of the expansion. The angular multipliers of the atomic density were treated exactly. It is shown that this approach can serve as a sufficiently accurate and fast algorithm for the calculation of multicenter two-electron molecular integrals with Slater-type basis functions. © 1995 John Wiley & Sons, Inc.
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  • 48
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    International Journal of Quantum Chemistry 55 (1995), S. 23-34 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The intersystem crossing (ISC) between the lowest triplet and singlet states occurring in the reaction of atomic oxygen with ethylene was studied. The importance of spin-orbit coupling (SOC) in oxirane biradicals (ĊR′R″ - CRR* - Ȯ) is stressed through calculations where the spin-orbit matrix elements over the full Breit-Pauli SOC operator has been obtained in the singlet-triplet crossing region. The calculations are performed with a multiconfigurational linear response approach, in which the spin-orbit couplings are obtained from triplet response functions using differently correlated singlet-reference-state wave functions. Computational results confirm earlier semiempirical predictions of the spin-orbit coupling as an important mechanism behind the ring opening of oxiranes and addition of oxygen O(3P) atoms to alkenes. © 1995 John Wiley & Sons, Inc.
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  • 49
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    International Journal of Quantum Chemistry 53 (1995), S. 67-76 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We consider a crystal as partitioned into a localized molecular cluster (containing a defect or not) and an embedding region. Within the Hartree-Fock formalism, an expression is derived for an effective potential due to the embedding region of crystal. This potential is part of the cluster Fock operator and requires input from a perfect crystal calculation. Special features of the derivative are rigorous inclusion of cluster-embedding overlap and orthogonality between single-electron states of the embedding region and the function-space manifold of the cluster; physically correct normalization of the Fock eigenstates; and a nontrivial total-energy algorithm. Computational requirements are qualitatively compared with those for an isolated cluster. The method allows for intracluster (and intraembedding) correlation and can be adapted straightforwardly to local density functional approaches. Fundamental aspects of the embedding problem are addressed in a general formulation that is, nevertheless, oriented toward explicit calculations. © 1995 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 53 (1995), S. 583-590 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An efficient procedure for third-order electron propagator calculations of ionization energies and electron affinities is reported. Diagonal self-energy expressions that are suitable for large molecules are empolyed. The outer-valence Green's function method also is implemented. An integral transformation program for direct and semidirect algorithms is modified to store only nonzero integrals according to Abelian point group symmetry. Contributions to self-energy matrix elements that depend on electron repulsion integrals with four virtual orbital indices are computed in a direct way. Intermediate batches of integrals are created by sort procedures while avoiding storage of transformed integrals in the main memory. This method permits calculation of electron binding energies for C72- with a 231 atomic orbital basis and for Zn(C5H5)2 with a 220 atomic orbital basis on an IBM RISC/6000 Model 550. During these calculations, the CPU is engaged approximately 90% of the time. © 1995 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 53 (1995), S. 607-615 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The intermolecular potentials for the X 2σ and A2Π states of Li… Ar were studied by a variety of multiconfiguration, single-configuration, and perturbation methods (CASPT2). The A 2Π excited state was calculated to have a well depth of 811 cm-1 at an internuclear separation of 2.59 Å, in excellent agreement with the 810 cm-1 derived from experimental data. A smaller well of 77 cm-1 was found for the X 2σ ground state at an intermolecular separation of 4.8 Å. These results are in better agreement with experimental results than were the previously reported pseudopotential calculations. The comparison of CI calculation with the CAPST2 results shows that the latter is able to give good results for interacting metal-rare gas systems. © 1995 John Wiley & Sons, Inc.
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  • 52
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    International Journal of Quantum Chemistry 56 (1995), S. 265-283 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This article is a brief review of the work formalism of electronic structure, its recent developments, and the results of its application to spherically symmetric and nonspherical density atoms. The formalism, which is founded in Schrödinger theory, is derived by physical arguments based on Coulomb's law. The fundamental quantity in the formalism is the pair-correlation density that constitutes the nonlocal quantum-mechanical source charge distribution giving rise to both a local potential representing electron correlations as well as the electron interaction energy. The potential is the work done to move an electron in the force field of the pair-correlation density and the energy the interaction energy between the electronic and pair-correlation densities. (For systems for which the curl of the force field may not vanish, the potential is obtained from the irrotational component of the field, the solenoidal component being neglected). The differential equation governing the system is a Sturm-Liouville equation, and as such, the exact wave function can in principle be obtained as an infinite linear combination of Slater determinants of the self-consistently determined spin-orbitals of the occupied and virtual states. The correctness of the interpretation for the local potential representing electron interaction is evidenced as follows: In the Pauli-correlated and central field approximations, ground-state energies of atoms (2 He -86Rn) lie within 50 ppm of those of Hartree-Fock theory, differing by less than 10 ppm for atoms with Z 〉 35. The densities thus generated clearly exhibit atomic shell structure and also satisfy the Kato-Steiner electron-nucleus cusp condition to 2 ppm. Another attribute of the formalism is that the asymptotic structure of the potential (when both Pauli and Coulomb correlations are considered) is that of the Pauli-correlated approximation. This is rigorously the case as shown for the He atom for which the potential vanishes in the classically forbidden region, the potential there being the exchange potential. As such, it is meaningful to compare the highest occupied eigenvalue of the differential equation in the Pauli-correlated approximation to experiment. A comparison for atoms and atomic ions of this eigenvalue to experimental ionization potentials and electron affinities show them to be consistently superior to the corresponding eigenvalue of Hartree-Fock theory. Transition energies determined from eigenvalue differences are also superior to those obtained from total energy calculations via Hartree-Fock theory when compared to experiment. Further, by considering the carbon atom in one of its degenerate ground states for which the curl of the field due to the Fermi hole does not vanish, it is shown that the solenoidal component of the field is negligible and two orders of magnitude smaller than is the irrotational component. Thus, the approximation of obtaining a path-independent potential for nonspherical density systems from the irrotational component of the field is accurate. Finally, Coulomb correlation effects can be incorporated within the work formalism in practice via the configuration interaction approximation. The self-consistent orbitals thus obtained explicitly incorporate the effects of both Pauli and Coulomb correlations in their structure because the source charge from which they are generated is a pair-correlation density. Furthermore, these orbitals possess the correct asymptotic structure since they are also generated by a potential that is local. The work formalism also provides a physical interpretation for the local potential representing electron correlations of Kohn-Sham density functional theory. Further, the exchange potential of the work formalism satisfies analytically two requisite conditions of the Kohn-Sham theory exchange potential. These are the scaling requirement and the sum rule relating the exchange energy to its functional derivative. The work formalism also leads to a deeper understanding of electron correlations in various approximations within Kohn-Sham theory. For example, it can be rigorously shown that the pair-correlation density in the local density approximation contains a term proportional to the gradient of the density. Thus, in contrast to the Kohn-Sham theory interpretation that electron correlations in this approximation are those of the uniform electron gas assumed valid locally, we learn that the nonuniformity of the electronic density is, in fact, explicitly accounted for by the approximation. This then explains the accuracy of the approximation. © 1995 John Wiley & Sons, Inc.
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  • 53
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    International Journal of Quantum Chemistry 56 (1995), S. 29-37 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The aziridine analogues of the epoxide metabolites of carcinogenic polycyclic aromatic hydrocarbons have greater mutagenic potency than the epoxides. Like their well-studied analogues, the aziridines undergo a pH-dependent decomposition that leads to a reactive carbocation intermediate. In aqueous solution the nucleophile with which the carbocation generally reacts is water. The kinetics of this pH-dependent reaction have been experimentally characterized by others. Although the effect of DNA on this reaction has not been studied, we hypothesize that, like their epoxide analogues, the aziridine derivatives of polycyclic aromatic hydrocarbons undergo a DNA-catalyzed reaction leading through a carbocation to either a DNA-adduct or a hydrolysis product. Using Poisson-Boltzmann calculations in conjunction with Metropolis Monte Carlo simulations and energy-minimized conformations, we predict the DNA-dependence of the acidcatalyzed decomposition of the K-region aziridine, phenanthrene[9,10]imine. © 1995 John Wiley & Sons, Inc.
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  • 54
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    International Journal of Quantum Chemistry 56 (1995), S. 39-49 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A QSAR analysis of a series of Valproic Acid (vpa) derivatives is given, which shows the importance of hydrophobic and electronic effects as determinants of the anticonvulsivant activity. The statistical analysis allows one to infer that the electron acceptor capability of the carboxylic carbon atom may guide electrostatic interactions of the molecules with the receptor site, in those cases where the lipophilic requirements are satisfied. Both the anticonvulsivant activity and the calculated lipophilic parameters (log P values) are taken from the literature, whereas the electronic descriptors result from Intermediate Neglect of Differential Overlap calculations at the Configuration Interaction level, (INDO/S-CI parametrization), for the most stable conformers of each derivative. The protein environment is modeled as a dielectric continuum in a Self-Consistent Reaction Field approach. The conformational analysis is based on AMI calculations. © 1995 John Wiley & Sons, Inc.
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  • 55
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    International Journal of Quantum Chemistry 53 (1995), S. 149-160 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new form of second-order multireference perturbation theory coupled with finite-field perturbation theory is applied to evaluate some one-electron molecular properties. Several possible definitions of the zeroth-order Hamiltonian are considered and results tested against bench-mark full CI calculations. © 1995 John Wiley & Sons, Inc.
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  • 56
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    International Journal of Quantum Chemistry 56 (1995), S. 363-369 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correlation present in the nondegenerate ground state of an interacting Fermi system is discussed in terms of reduced density matrices and their cumulant expansion. By generalizing a result obtained for the interacting uniform electron gas (correlation induced exchange-hole narrowing), possible measures of the correlation strength in terms of natural occupation numbers (the eigenvalues of the true one-particle density matrix) are introduced. These quantities-the v-order nonidempotency and the information entropy of the natural occupation numbers-result from the correlated many-body wave function and characterize the ground-state correlation in addition to the usual correlation energy. The uniform electron gas serves as a first illustrative example. © 1995 John Wiley & Sons, Inc.
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  • 57
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    International Journal of Quantum Chemistry 56 (1995), S. 351-361 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present work, we reexamined the gradient expansion of the exchange energy of an electron gas with a slowly varying charge density. We stay within the exchange-only approximation of Sharp, Horton, Talman, and Shadwick but go to second order in the deviation from the homogeneous limit. The coefficient of the lowest-order gradient correction is obtained analytically both for a bare and a screened Coulomb interaction - the former yielding the value previously obtained by Kleinman numerically and by Engel and Vosko analytically. A screened Coulomb interaction gives Sham's coefficient in the limit of infinite screening length. The cause of the difference between the coefficients of Kleinman and Sham is clearly exhibited. The coefficients of the two next highest-order gradient corrections, one of which originates in second-order response theory, is shown to diverge as the screening length becomes large. The bare Coulomb interaction gives finite coefficients of which the one originating from linear response is obtained analytically and differs from the presumably correct result obtained by Engel and Vosko. This discrepancy demonstrates the extreme sensitivity of the analytical expressions to different regularization procedures. We suggest that coefficients should rather be chosen according to the performance of the resulting gradient approximations in weakly perturbed electron gases. © 1995 John Wiley & Sons, Inc.
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  • 58
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    International Journal of Quantum Chemistry 56 (1995), S. 371-383 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The focal point of the present work is the single-particle kinetic energy density tensor in D dimensions. This quantity enters both differential and various integral forms of the virial theorems, which are again set up in D dimensions. Major new results lie in (i) demonstrating that, by one-dimensional quadrature, it is possible to construct the Pauli potential directly from the kinetic energy tensor, without the need for functional differentiation and (ii) generating the gradient expansion for the kinetic energy tensor, in D dimensions. © 1995 John Wiley & Sons, Inc.
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  • 59
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    International Journal of Quantum Chemistry 56 (1995), S. 113-122 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The geometries of the two most important tautomeric forms of adenine and the corresponding methyladenines are investigated by means of quantum chemical calculations at different level of sophistication, ranging from semiempirical methods to correlation corrected ab initio methods at second-order Møller-Plesset perturbation theory level (MP2). The relative stability of the N(7)H ↔ N(9)H tautomeric forms of adenine are investigated with highly correlation corrected methods, MP3 and MP4. The relative stability is also corrected for solvent interactions and compared with experimental information. N(9)H-adenine is predicted to be the most stable tautomer in both vacuum and in solution. The relative stability is predicted to be between 24.5 and 35.0 kJ/mol in vacuum depending on computation method. In water solution N(7)H-adenine is stabilized more by the solvent, and the corresponding relative energies were found to be between 4.9 and 10.2 kJ/mol. We also found that correlation effects are essential to describe the ground state geometry with a high accuracy. The geometries predicted by semiempirical methods and ab initio calculations without correlation correction show large deviations in some parts of the molecule compared to the MP2 results as well as compared with experimental geometries. © 1995 John Wiley & Sons, Inc.
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  • 60
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    International Journal of Quantum Chemistry 56 (1995), S. 145-153 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab Initio crystal orbital calculations on three-dimensional crystals/crystallohydrates of a number of diprotonated mononucleotides have been performed using the CRYSTAL92 routine package. The present results help to gain a deeper insight into the physical mechanisms of nucleic acid semiconductivity, as well as into the essence of intermolecular interactions and solvent effects in solid-state samples of nucleic acids. © 1995 John Wiley & Sons, Inc.
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  • 61
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Experimentally measured rates for the oxidation of p-substituted benzyl amines by bovine monoamine oxidase type B (MAO-B) derived from the literature were examined with respect to the effects of molecular (semiempirically (AM1) derived) electronic, steric, and lipophilicity parameters. These properties included vertical and adiabatic ionization potential, LUMO energy, the LUMO-HOMO difference, molecular hardness, absolute electronegativity, calculated log P values, molecular volume, surface area, and ovality. Substrate oxidation rates (log kcat/Km) were found to correlate with molecular ovality and vertical ionization potential while the rate of enzymatic (flavin) reduction associated with substrate oxidation (log kred) was described by a two-parameter model containing an ovality and an absolute electronegativity term. These results are consistent with an initial one-electron substrate oxidation mechanism. In previous work, use of classical Hansch analysis suggested that electronic terms were not important in the enzymatic reactions. This discrepancy may be related to nontransferability inherent in fragment approaches which assume that the substituent of interest behaves similarly in all molecular scaffolds. Analysis of substrate binding (log Kd) to the enzyme was described by a two-parameter model containing a calculated log P term as well as LUMO energy. The significant correlation found with LUMO energy is consistent with studies suggesting that this property is important for drug-receptor interactions. © 1995 John Wiley & Sons, Inc.
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  • 62
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    International Journal of Quantum Chemistry 56 (1995), S. 201-206 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The integrated molecular transform (FTm) is a unitary structure index that has been successfully used for the correlation of 2- and 3-dimensional structure representations with their physicochemical and pharmacological properties. In the present instance the reported pKa values in a series of 30 compounds consisting of five subseries were correlated with their FTm indices. The omission of four outliers gave a moderate correlation across the entire series; within the individual subseries the correlations were considerably improved even with inclusion of the outliers. In general, the logarithmic transform of the pKa did not improve the correlations. This method gives a relatively simple means of estimating pKa in several structure classes. © 1995 John Wiley & Sons, Inc.
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  • 63
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    International Journal of Quantum Chemistry 56 (1995) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 64
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    International Journal of Quantum Chemistry 56 (1995), S. 207-225 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We investigated Raman and infrared spectra of the Watson-Crick type of the guanine cytosine base pair and of the individual guanine and cytosine nucleic acid bases by ab initio Hartree-Fock theory using the 6-31G* basis set. IR and Raman intensities and Raman depolarization ratios were predicted using the double-harmonic approximation. The effects of a polar solvent were modeled by the self-consistent reaction field (SCRF) approximation. Variations in geometries, harmonic force constants, and vibrational spectra of the studied nucleobases due to the specific hydrogen-bonding interactions are discussed. © 1995 John Wiley & Sons, Inc.
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  • 65
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    International Journal of Quantum Chemistry 53 (1995), S. 275-286 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present here a perturbative analysis of the coupled cluster response method for molecular static properties with Euler and extended coupled cluster functionals under cubic truncation. Comparative analysis is meant to cater to both pedagogical and practical interests. Comprehensive tables for energy-derivative expressions and equations at the stationary point are presented. © 1995 John Wiley & Sons, Inc.
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  • 66
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    International Journal of Quantum Chemistry 53 (1995), S. 297-308 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ground-state potential energy curve of the F2 molecule as well as spectroscopic constants were calculated by means of the second-order quasi-degenerate many-body perturbation theory within a full (eight) valence orbital space using a DZP basis set. The problem encountered with a large number of valence electrons is avoided by a proper redefinition of the Fermi vacuum. A comparison with other related multireference techniques is also provided. © 1995 John Wiley & Sons, Inc.
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  • 67
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    International Journal of Quantum Chemistry 56 (1995), S. 509-519 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Correlation holes of electrons with the same (Fermi hole) and different (Coulomb hole) spins in the ground (X1Σ+), first (A1Σ+) and second (B1II) excited states of LiH were constructed from full configuration interaction (CI) wave functions. It was found that the shapes of both the Fermi and Coulomb holes in these states are dependent on the location of the reference electron. When the reference electron is chosen to be close to the Li nucleus, the Fermi correlation results in a large negative hole for all three states. However, the A1Σ+ excited state is further characterized by displaying a second hole around the H nucleus, and in the B1II state, the hole is elongated along the molecular axis. Coulomb correlation shows up strongly in the A1Σ+ state and, in addition, there is clearly correlation of electrons at the two nuclei. These features of the correlation holes were compared with those from a two-Slater-determinant model wave function. The Hartree, Fermi, and Coulomb screening potentials in these states were also studied in the light of possible modeling of the correlation functionals for the excited states. © 1995 John Wiley & Sons, Inc.
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  • 68
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    International Journal of Quantum Chemistry 56 (1995), S. 93-108 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The link between a uniform scaling of the electron density and a scaling of the electron-electron interaction is reviewed. The effective potential along the coupling constant path which connects a noninteracting and a fully interacting system with the same electron density is considered. The effective potential for an arbitrary coupling constant is here expressed in terms of the exchange-correlation potential at a coupling constant of unity. The effective potential is then investigated for ionization processes. Use of the fact that the ionization energy is determined by the exponential decay of the electron density allows us to derive new formulas for the ionization energy. Based on the Taylor expansion of the effective potential along the coupling constant path, a density functional perturbation theory is introduced which leads to a formally exact Kohn-Sham KS formalism. To first order, this formalism gives identities for the exchange potential in terms of KS orbitals and orbital eigenvalues. Moreover, higher-order terms give identities for the correlation potential as well as for the exchange potential. These identities are pointwise as well as integrated. Hence, various new requirements for the exchange and correlation functionals are derived. New insight into the optimized effective potential method is gained by discussing it in the light of the results obtained here. © 1995 John Wiley & Sons, Inc.
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  • 69
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Available approximations to Exc[{nσ}], the exchange-correlation energy functional of spin-density-functional theory, do not include self-interaction corrections (SIC). This leads to Kohn-Sham (KS) potentials, Vxcσ, that fail to satisfy some important analytic properties known to be exhibited by the exact potential. To resolve these difficulties, we consider a KS theory for orbital-dependent exchange-correlation energy functionals that explicitly includes SIC. Recent work by Krieger, Li, and lafrate (KLI), which considers the analytic properties of the spin-polarized optimized effective potentials (OEP), Vxcσ0, i.e., the KS potentials corresponding to Exc = Exc[{φiσ,}], is reviewed as well as the properties of VxcσKLI, an easily calculated approximation to the exact result which, unlike Vxcσ0, can be employed for systems of arbitrary symmetry. In addition, we compare the results of the exact and approximate OEP calculation of the properties of the ground state of atoms and singly charged negative ions in the exchange-only case in which Ex = ExHF [{φiσ}] where HF = Hartree-Fock. We conclude that VxσKLI maintains most of the important analytic properties of Vxσ0, and provides an excellent numerical approximation to the exact result. We also give detailed consideration to the calculation of the ionization potential, I, and the electron affinity, A, in the exchange-only approximation for atoms with Z ≤ 20. We find that the KLI results for both I and A are always within 0.1 milli-au of the exact KS results, whereas both the local spin density (LSD) approximation and the Becke exchange only energy functional lead to deviations which on average are two orders of magnitude larger and significantly exceed the criterion for quantum chemistry accuracy. Finally, using the KLI method for orbital dependent Exc, we compare the KS results for I and A for Z ≤ 20 with the experimental values by employing various approximations for Exc[{φiσ] including: (1) HF exchange with LSD correlation with SIC, (2) LSD approximation for exchange and correlation with SIC, (3) the conventional spin density LSD approximation, and (4) the Becke exchange-energy functional with LSD correlation. In addition, we examine how closely the ionization theorem for ∊m, the energy eigenvalue for the highest occupied orbital, is satisfied in these approximations. © 1995 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 56 (1995), S. 131-136 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: First-principles local density functional approximation (LDA) calculations using the linear-response method are more efficient than are traditional supercell or dielectric matrix techniques for determining phonon spectra and dielectric constants. We have implemented this approach using a linearized-augmented-plane-wave (LAPW) basis, which facilitates such calculations for systems containing transition-metal and other atoms with localized orbitals. The accuracy of the method is illustrated with applications to some semiconductors and ferroelectrics. Theoretical work on the perovskite ferroelectrics has focused on the possible roles of disorder and soft-phonon behavior. A complete mapping in the Brillouin zone (BZ) of the ferroelectric instability of KNbO3 has been carried out, revealing a pronounced two-dimensional character. In real space, this instability corresponds to chains oriented along 〈100〉 directions, of displaced Nb atoms. Such instabilities are discussed in relation to the static chain structures in the eight-site order-disorder model introduced by Comes et al. © 1995 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 56 (1995), S. 663-668 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electrostatic and dispersion contributions of solute-solvent interactions have been considered in the self-consistent reaction field scheme and implemented in the LCGTO-DF (linear combination of Gaussian-type orbitals-density functional) method. Results for the tautomeric equilibrium of formamide-formamidic acid, for the cis-trans energy difference in dichlorodiammineplatinum(II), and for H2O—HF hydrogen-bond systems are in agreement with the available experimental and previous high-level ab initio data. The role of the dispersion energy is discussed for the different studied systems. © 1995 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 56 (1995), S. 669-675 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Local (LSD) and nonlocal (NLSD) spin density calculations using different exchangecorrelation functionals have been performed to determine equilibrium geometries, harmonic vibrational frequencies (ωe), ionization potentials (IP), electron affinities (EA), dipole moments (μ), and singlet-triplet energy gaps (Δ EST) of SiH2, GeH2, and SnH2. Geometrical structures as well as vibrational frequencies are in agreement with the available experimental data and compare favorably with the most sophisticated postHartree-Fock computations performed until now. Both computed IPS (9.15 and 9.25 eV for SiH2 and GeH2, respectively) and EA of SiH2 (1.17 eV) compare favorably with experimental data (9.17, 9.21, and 1.2 eV). Accurate values are obtained also for singlet-triplet energy gaps. We report for the first time the electron affinities of all neutral systems and the spectroscopic constants of the cations and anions. © 1995 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 55 (1995), S. 187-203 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The coupled clusters singles and doubles (CCSD) method for calculations of open-shell systems with the single restricted Hartree-Fock (ROHF) reference determinant is extended by the noniterative triples to give CCSD(T). Our approach profits from the fact that (a) single- and double-excitation amplitudes are spin-adapted, which directly leads to a computationally less demanding algorithm than are nonadapted procedures and produces the spin-adapted CCSD wave function and (b) triple excitations calculated from converged spin-adapted (SA) CCSD amplitudes are also obtained more effectively. Altogether, computer demands of our SA CCSD(T) approach, applicable to high-spin open-shell cases which are well represented by a single-determinant reference is comparable to that for closed-shell systems. Our approach is not based on semicanonical orbitals, applied by Bartlett's group. However, we compare some other possible choices of ROHF orbitals to this “standard.” Numerical results for a series of atoms and molecules demonstrate little sensitivity to this selection. © 1995 John Wiley & Sons, Inc.
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  • 74
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio accurate all-electron relativistic molecular orbital Dirac-Fock self-consistent field calculations are reported for the linear symmetric XeF2 molecule at various internuclear distances with our recently developed relativistic universal Gaussian basis set. The nonrelativistic limit Hartree-Fock calculations were also performed for XeF2 at various internuclear distances. The relativistic correction to the electronic energy of XeF2 was calculated as ∼ -215 hartrees (-5850 eV) by using the Dirac-Fock method. The dominant magnetic part of the Breit interaction correction to the nonrelativistic interelectron Coulomb repulsion was included in our calculations by both the Dirac-Fock-Breit self-consistent field and perturbation methods. The calculated Breit correction is ∼6.5 hartrees (177 eV) for XeF2. The relativistic Dirac-Fock as well as the nonrelativistic HF wave functions predict XeF2 to be unbound, due to neglect of electron correlation effects. These effects were incorporated for XeF2 by using various ab initio post Hartree-Fock methods. The calculated dissociation energy obtained using the MP2(full) method with our extensive basis set of 313 primitive Gaussians that included d and f polarization functions on Xe and F is 2.77 eV, whereas the experimental dissociation energy is 2.78 eV. The calculated correlation energy is ∼ -2 hartrees (-54 eV) at the predicted internuclear distance of 1.986 Å, which is in excellent agreement with the experimental Xe - F distance of 1.979 Å in XeF2. In summary, electron correlation effects must be included in accurate ab initio calculations since it has been shown here that their inclusion is crucial for obtaining theoretical dissociation energy (De) close to experimental value for XeF2. Furthermore, relativistic effects have been shown to make an extremely significant contribution to the total energy and orbital binding energies of XeF2. © 1995 John Wiley & Sons, Inc.
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  • 75
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    International Journal of Quantum Chemistry 56 (1995) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 76
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    International Journal of Quantum Chemistry 56 (1995), S. 187-195 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Based on the EHMO approach, the band structures for the Y—Ba—Cu—O superconductors doped by La were calculated. The influence of the partial substitutions of La for Y and Ba in YBa2CU3Oy on its electronic structures was investigated. The results demonstrate that the La doping at the Ba site has a great effect on the electronic structures of the Y—Ba—Cu—O superconductors, whereas the change in the band structures caused by the La doping at the Y site is very small. The increase in the oxygen content caused by the La doping results in an increase in the densities of states at Ef, N(Ef), for La1+x Ba2-xCu3Oy, but the increase in N(Ef) cannot compensate the decrease caused by the La doping at the Ba site. In addition, the 2D Cu—O planes are much more sensitive to the change in N(Ef) than are the 1D Cu—O ribbons, which implies an important role of the 2D Cu—0 planes in the Y—Ba—Cu—O superconducting system, regardless of whether La substitutes for Y or for Ba. © 1995 John Wiley & Sons, Inc.
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  • 77
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    International Journal of Quantum Chemistry 56 (1995), S. 197-198 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 78
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    International Journal of Quantum Chemistry 56 (1995), S. 211-215 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The proof of Parr and Chattaraj for the Principle of Maximum Chemical Hardness is very general and can be applied to many more observables. The case of the physical, or mechanical, hardness of a solid is taken as an example. It is shown that this also should be a maximum in an equilibrium system. Assuming the validity of the argument leads to new information about the compressibility of solids. A simple expression is also given for the Gruneisen constant. These maximum principles are necessary consequences of the equilibrium conditions of quantum mechanics and thermodynamics. © 1995 John Wiley & Sons, Inc.
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  • 79
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    International Journal of Quantum Chemistry 56 (1995), S. 217-223 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The field theoretical background of relativistic density functional theory is emphasized and its consequences for relativistic Kohn-Sham equations are shown. The local density approximation for the exchange energy functional is reviewed and the importance of relativistic corrections for an accurate representation of the exchange functional is demonstrated. © 1995 John Wiley & Sons, Inc.
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  • 80
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    International Journal of Quantum Chemistry 56 (1995), S. 423-432 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dynamics of Jahn-Teller systems has recently been discussed in terms of generalized electronic charge and current densities in nuclear-coordinate space. The introduction of the electronic phase as a function of both electronic and nuclear coordinates, in addition to the electronic density, was a crucial component of this formulation. Here, a densitybased treatment of Born couplings is derived from first-principles quantum mechanics beyond the Born-Oppenheimer approximation. Because of the degenerate electronic configuration of a Jahn-Teller molecule, there are an infinite number of ways in which the charge distribution can be oriented for the same energy, leading to a vanishing bond hardness for the molecule in the symmetric nuclear configuration. Further, the moving nuclear framework serves as the perturbation necessary to define the orientation of the charge density, leading to unhindered rotation of the charge cloud. This leads to the dynamical Jahn-Teller problem, namely, the coupling of electronic and nuclear motions through the Born coupling terms. Applications to superconductivity theory are discussed. © 1995 John Wiley & Sons, Inc.
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  • 81
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    International Journal of Quantum Chemistry 56 (1995), S. 433-444 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is possible to reformulate the reaction field (RF) model of continuum solvent effects, by considering an approximate expression describing the energy changes from one ground state to another, in the frame of density functional theory (DFT). The energy functional for an arbitrary electronic system coupled to a spin-independent electrostatic external perturbation is used to derive the well-known Born expression giving the electrostatic component of the solvation energy of an atomic ion. The approximate RF-DFT model is illustrated for a series of representative singly positive and negatively charged atomic ions. A Kohn-Sham (KS)-like formalism is then proposed to compute solvation energies within a self-consistent field scheme. The extension of the RF-DFT model to molecular systems is also outlined. © 1995 John Wiley & Sons, Inc.
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  • 82
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    International Journal of Quantum Chemistry 56 (1995), S. 453-476 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Recent reactivity concepts formulated within charge analysis (CSA) are outlined. The charge stability criteria of equilibrium states in open and closed systems are conveniently characterized in terms of the condensed reactant hardness quantities of reactants; their implications for catatytic systems are examined. A use of characteristics associated with selected collective charge displacement modes, including the populational normal modes and minimum-energy coordinates, as diagnostic tools in the theory of chemical reactivity is proposed. The importance of the mapping relations between modes defined in the electron population and nuclear position spaces, respectively, as the unifying concept linking the conjugate charge and geometry displacements, is commented upon. Recent results for model catalytic clusters are used to illustrate some of the concepts introduced. Finally, the relevant contributions to the quadratic interaction energy between reactants are reexamined and expressed in terms of relevant charge sensitivities. © 1995 John Wiley & Sons, Inc.
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  • 83
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    International Journal of Quantum Chemistry 56 (1995), S. 489-498 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Boltzmann-Shannon (BS) information entropy Sρ = ∫ ρ(r)log ρ(r)dr measures the spread or extent of the one-electron density ρ(r), which is the basic variable of the density function theory of the many electron systems. This quantity cannot be analytically computed, not even for simple quantum mechanical systems such as, e.g., the harmonic oscillator (HO) and the hydrogen atom (HA) in arbitrary excited states. Here, we first review (i) the present knowledge and open problems in the analytical determination of the BS entropies for the HO and HA systems in both position and momentum spaces and (ii) the known rigorous lower and upper bounds to the position and momentum BS entropies of many-electron systems in terms of the radial expectation values in the corresponding space. Then, we find general inequalities which relate the BS entropies and various density functionals. Particular cases of these results are rigorous relationships of the BS entropies and some relevant density functionals (e.g., the Thomas-Fermi kinetic energy, the Dirac-Slater exchange energy, the average electron density) for finite many-electron systems. © 1995 John Wiley & Sons, Inc.
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  • 84
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    International Journal of Quantum Chemistry 56 (1995), S. 499-508 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The local density approximation (LDA) to exchange and correlation effects has well-known limitations. The nonlocal weighted density approximation (WDA) corrects some of those defects. This is illustrated here by applications to free atoms and small atomic clusters. The WDA also induces a nonlocal kinetic energy functional that is tested for atoms. © 1995 John Wiley & Sons, Inc.
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  • 85
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    International Journal of Quantum Chemistry 56 (1995), S. 521-533 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a density functional scheme for calculating the frequency-dependent linear response of superconductors. The central result is a set of integral equations determining the linear response of the normal and anomalous densities to external perturbations. Analytic solutions of these integral equations are obtained for homogeneous systems with separable effective interactions. For inhomogeneous superconductors, the formalism leads to a scheme for calculating the critical temperature without explicitly solving the gap equation. © 1995 John Wiley & Sons, Inc.
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  • 86
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    International Journal of Quantum Chemistry 56 (1995), S. 535-545 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ensemble N-representability problem for the k-th order reduced density matrix (k-RDM) as well as the problem of reconstruction of the N-particle system density matrices (N-DM) from a given k-RDM are studied. The spatial parts of the k-RDM expansion in terms of spin tensorial operators Θλk are represented using particular values (at specially chosen ) of the Radon transform of the N-DM spatial parts (or their sums) DNλ(x′ | x″) (here, is a d-plane in the n-space ∝n of x = (x′, x″)), with n = 6N, d = 3 (N - k), x′ ≡ (r′1,⃛, r′N), x′ ≡ (r1″,⃛, r″N ()). In this way, the problem is reduced to investigation of the properties of the functions . For a normalizable N - DM, it is proved that are bounded functions. The properties of implied by the N-DM permutational symmetry, Hermiticity, and positive definiteness are found. A formal procedure of reconstruction of all N-DM corresponding to a given k-RDM is proposed. © 1995 John Wiley & Sons, Inc.
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  • 87
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    International Journal of Quantum Chemistry 56 (1995), S. 575-587 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The π-allylic organonickel compounds are considered to be key structures in the catalytic reactions of butadiene. Bis(η3-allyl)nickel, bis(η3-methallyl)nickel, and the syn-crotyl-cyclooctadiene-nickel cation have been calculated with DZ and TZ basis sets in all-electron and pseudopotential (ECP) Hartree-Fock (HF) methods and compared with experimental structures. In the second part, we report a systematic investigation of these compounds by density functional theory (DFT). The DFT-optimized structures are generally in better agreement with experimental data than are the HF results. © 1995 John Wiley & Sons, Inc.
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  • 88
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The vibrational frequencies of NaN clusters (2 ≤ N ≤ 72) are calculated by direct diagonalization of the dynamical matrix. Density functional theory with a spherically averaged pseudopotential is used to compute the total energy. The geometry is optimized by the simulated annealing technique. Contributions to the Hessian matrix due to electron relaxation following the ionic displacements are calculated in linear response theory. The frequencies are in the range 0-220 cm-1 and the electron relaxation strongly modifies those of the modes dominated by radial oscillations, particularly the breathing mode frequencies that are proportional to N-1/3. The filling of atomic shells produces a stepwise behavior of the highest frequencies. The giant dipole resonance energies are obtained as a byproduct of the calculation. © 1995 John Wiley & Sons, Inc.
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  • 89
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    International Journal of Quantum Chemistry 56 (1995), S. 627-632 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Weizsäcker functional TW is a necessary element to explain basic physical and chemical phenomena of atomic and molecular systems in the general density functional theory initiated by Hohenberg and Kohn. Here, rigorous inequalities which involve the functional TW and two arbitrary power-type density functionals ωα ≔ ∫ ρα(r)dr are found by the successive applications of Sobolev and Hölder inequalities. Particular cases of these inequalities give lower bounds to the Weizsacker functional of an N-electron system in terms of a fundamental and/or experimentally measurable quantity such as, e.g., the Thomas-Fermi kinetic energy T0, the Dirac-Slater exchange energy K0 and the average electronic density 〈ρ〉 in doing so, some known relationships appear. A numerical Hartree-Fock study of the accuracy of some resulting lower bounds is carried out. Finally, rigorous relationships between the Weizsäcker functional and the Boltzmann-Shannon information entropy of the system under consideration are given. © 1995 John Wiley & Sons, Inc.
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  • 90
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    International Journal of Quantum Chemistry 56 (1995), S. 1-1 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 91
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    International Journal of Quantum Chemistry 56 (1995), S. 3-27 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 92
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    International Journal of Quantum Chemistry 56 (1995), S. 51-59 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Over the past 7 years, the enediyne anticancer antibiotics have been widely studied due to their DNA cleaving ability. The focus of these antibiotics, represented by kedarcidin chromophore, neocarzinostatin chromophore, calicheamicin, esperamicin A, and dynemicin A, is on the enediyne moiety contained within each of these antibiotics. In its inactive form, the moiety is benign to its environment. Upon suitable activation, the system undergoes a Bergman cycloaromatization proceeding through a 1,4-dehydrobenzene diradical intermediate. It is this diradical intermediate that is thought to cleave double-stranded DNA through hydrogen atom abstraction. Semiempirical, semiempirical CI, Hartree-Fock ab initio, and MP2 electron correlation methods have been used to investigate the inactive hex-3-ene-1,5-diyne reactant, the 1,4-dehydrobenzene diradical, and a transition state structure of the Bergman reaction. Geometries calculated with different basis sets and by semiempirical methods have been used for single-point calculations using electron correlation methods. These results are compared with the best experimental and theoretical results reported in the literature. Implications of these results for computational studies of the enediyne anticancer antibiotics are discussed. © 1995 John Wiley & Sons, Inc.
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  • 93
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    International Journal of Quantum Chemistry 56 (1995), S. 83-93 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential energy surface for the first step of the alkaline hydrolysis of methyl acetate was explored by a variety of methods. The conformational search routine within SPARTAN was used to determine the lowest energy AM1 and PM3 structures for the anionic tetrahedral intermediate. Ab initio single point and geometry optimization calculations were performed to determine the lowest energy conformer, and the linear synchronous transition (LST) method was used to provide an initial structure for transition state optimization. Transition states were obtained at the AM1, PM3, 3-21G, and 3-21 + G levels of theory. These transition states were compared with the anionic tetrahedral intermediates to examine the assumption that the intermediate is a good model for the transition state. In addition, the Cramer/Truhlar SM3 solvation model was used at the semiempirical level to compare gas phase and aqueous alkaline hydrolysis of methyl acetate. © 1995 John Wiley & Sons, Inc.
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  • 94
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    International Journal of Quantum Chemistry 56 (1995), S. 95-102 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present nonlocal density-functional calculations for a model of the [Fe4S4]3+ cluster found in high potential iron proteins, which consists formally of a ferric pair Fe 3+Fe3+ and a mixed-valence pair Fe 2.5+—Fe2.5+. Three Spin Hamiltonian parameters, J (the interlayer Heisenberg interaction), B (a resonance delocalization term) and ΔJ12 (associated with the ferric pair) have been estimated using density-functional energies of a high-spin state as well as two different broken symmetry states. We obtain J=673 cm-1, B=878 cm-1, and Δ J12=160 cm-1. These results are discussed in the light of experimental work on a model compound in the same oxidation state, in which the temperature dependence of the magnetic susceptibility was analyzed with this sort of spin Hamiltonian. Good overall agreement between theory and experiment (J=652 cm-1, B=592 cm-1), and ΔJ12=145 cm-1 is found. In particular, the antiferromagnetic spin coupling constant for the ferric pair exceeds in magnitude all other Heisenberg-type interactions (ΔJ12 〉 0) as expected from previous theoretical and experimental work; this is the first time that the broken symmetry method has been used to analyze a spin Hamiltonian with multiple coupling constants in an Fe4S4 cluster. © 1995 John Wiley & Sons, Inc.
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  • 95
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    International Journal of Quantum Chemistry 56 (1995), S. 763-769 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this article, some applications of lower bounds to density-dependent functionals in terms of radial expectation values are performed. These diverse applications include accurate upper bounds to the exact kinetic energy and to conjecture a wide set of relationships among radial and momentum expectation values. Some open questions for the improvement of these results are remarked upon. © 1995 John Wiley & Sons, Inc.
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  • 96
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    International Journal of Quantum Chemistry 56 (1995), S. 779-785 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two transition-metal oxide diatomic cations, VO+ and MoO+ are considered in this article. Ground- and excited-state properties of the cations are derived from spin-polarized DF calculations, including spectroscopic constants and metal-oxygen bonding features. A set of ionization potentials are calculated and, for vanadium oxide, compared with photoelectron spectroscopy data and a few available ab initio calculations. All calculated properties are close to experiment, the agreement being much better than for other traditional quantum chemical calculations. Present results together with our earlier findings for neutral molecules provide an excellent confirmation of the good performance of DFT in the case of transition-metal systems. © 1995 John Wiley & Sons, Inc.
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  • 97
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    International Journal of Quantum Chemistry 56 (1995), S. 771-777 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The structure and electronic structure of heavy-group V cluster anions (Sbn-, Bin-) are calculated with density functional methods within the local spin density approximation (LSDA). The influence of gradient corrections of the exchange and correlation energy is investigated. The calculated vertical and adiabatic ionization energies are in very good agreement with data from photoelectron spectroscopy (PES) for Sbn-, whereas the relatively large deviations for Bin- can be reduced by the consideration of relativistic effects in a scalar-relativistic manner. Concerning the structures, a strong similarity to the corresponding Pn- clusters was found. In particular, the negatively charged pentamers are planar rings (with similarities to the aromatic [C5H5]- anion) with especially high ionization energies. © 1995 John Wiley & Sons, Inc.
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  • 98
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    International Journal of Quantum Chemistry 56 (1995), S. 303-305 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This article considers two types of 2 × 2, 3 × 3, 4 × 4, and 5 × 5 determinantal inequalities. One type involves Gram determinants, while the other type involves determinants based on a theorem by Pólya and Szegö. The elements of the first type of determinants are 〈rn〉, while the elements of the second type of determinants are c 〈rn〉, where c = 3 + n, and r is the distance from the nucleus of an atom. Both types of determinantal inequalities are used to obtain lower-bound (LB) estimates of 〈1/r〉 for atoms of spherical symmetry. The inequalities involving Gram determinants have been applied previously by the author to atoms of spherically symmetric charge distributions, such as He, Ne, Ar, Kr, Xe; Li, Na, K, Rb; Be, Mg, Ca, Sr. In the resent article, the inequalities involving determinants based on the Pólya and Szegö theorem are applied to the same atoms. It is found that in both cases the LB values of 〈1/r〉, for all atoms considered, appear to converge to the quantum mechanical (QM) values of Boyd, who calculated them with the Roothan-Hartree-Fock wave functions of Clementi and Roetti. It is also found that the LB values of 〈1/r〉, using determinants based on the Pólya-Szegö theorem, converge “faster” to the QM values of 〈1/r〉 than do the LB values of 〈1/r〉 based on Gram determinants. © 1995 John Wiley & Sons, Inc.
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  • 99
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    International Journal of Quantum Chemistry 56 (1995), S. 109-115 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Shannon information entropies of H2, C2, HF, OH, CH, CN, HOOH, C2H6, MeOH, CH3OCH3, CH3F, CH2O, CH3NH2, and C2H4F2 in both position and momentum space were calculated from HF/6-31G* wavefunctions. The results show that there were definite patterns between the information entropies, molecular geometric changes, and energies. The L1, L2, and 1d, measures were compared as effective measures of distance and with energetic changes. The use of these concepts in describing chemical structure is discussed. © 1995 John Wiley & Sons, Inc.
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  • 100
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    International Journal of Quantum Chemistry 56 (1995), S. 117-130 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present the results of calculations of the static longitudinal polarizability of model molecular hydrogen chains of increasing length using density functional methods. The study considers the performance of different functionals, different basis sets, and the influence of the degree of bond length alternation. Significant differences in the asymptotic values are obtained in comparison with recent studies which have rigorously assessed the effects of more traditional methods of taking into account electron correlation corrections on coupled Hartree-Fock results. © 1995 John Wiley & Sons, Inc.
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