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  • 1995-1999  (4,537)
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  • Theoretical, Physical and Computational Chemistry  (1,576)
  • 101
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 299-304 
    ISSN: 0894-3230
    Keywords: molecular architecture ; molecule-based magnets ; biopolymers ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Application of the principles of physical organic chemistry to the construction of molecule-based magnets is discussed. Not only the magnetic structures of conventional magnets but also secondary and tertiary structures of biopolymers are instrumental in the molecular design. © 1998 John Wiley & Sons, Ltd.
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  • 102
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 350-355 
    ISSN: 0894-3230
    Keywords: 1,3-dipoles ; cumulenes ; infrared spectroscopy ; mass spectrometry ; flash vacuum thermolysis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: In the direct investigation of reactive intermediates it is particularly valuable to use a combination of several spectroscopic techniques. This commentary highlights recent examples, using primarily flash vacuum thermolysis for the generation of the intermediates, and matrix IR spectroscopy in conjunction with gas-phase mass spectrometric methods for their identification. The examples include nitrile imines, nitrile ylides, nitrile sulfides and selenides, dinitrogen sulfide and several novel cumulenes (X=C=C=Y, RN=C=C=C=X). © 1998 John Wiley & Sons, Ltd.
    Additional Material: 10 Ill.
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  • 103
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 305-320 
    ISSN: 0894-3230
    Keywords: poly(alkylmethyldiallylammonium halides) ; aggregation behavior ; polyelectrolytes ; polysoaps ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Hydrophobically modified polyelectrolytes (polysoaps) are a unique class of water-soluble polymers containing distinct hydrophobic and hydrophilic regions. Above a certain concentration, polysoaps form intramolecular and intermolecular aggregates in aqueous solution. They have attracted much attention not only for their ability to mimic some functions demonstrated by biopolymers but also for their important industrial applications. This review highlights some interesting features of novel non-cross-linked and cross-linked poly(alkylmethyldiallylammonium halides) that have been described in recent years. © 1998 John Wiley & Sons, Ltd.
    Additional Material: 10 Ill.
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  • 104
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 334-340 
    ISSN: 0894-3230
    Keywords: brain chemistry ; membrane proteins ; molecular neurobiology ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Efforts to developed detailed insights into the structure and function of the molecules of memory, thought and sensory perception - physical organic chemistry on the brain - are described. By combining more conventional chemical tools with a number of techniques adapted from modern biology, it is now possible to perform systematic structure-function studies on the integral membrane proteins that play a central role in molecular neurobiology. There are substantial challenges associated with such studies, but we believe the potential payoff is considerable. © 1998 John Wiley & Sons, Ltd.
    Additional Material: 3 Ill.
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  • 105
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    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 341-349 
    ISSN: 0894-3230
    Keywords: vicarious nucleophilic substitution ; hydrogen ; mechanism ; orientation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Hydrogens located at activated positions in electrophilic arenes, e.g. ortho and para hydrogens in nitrobenzenes, can be replaced with a nucleophile moiety provided there is at least one nucleofuge X connected to the nucleophilic centre. As the group really leaving in this hydrogen substitution process is not the hydride anion but X, the reaction has been named vicarious nucleophilic substitution of hydrogen (VNS). The concepts on the mechanism of the reaction and their experimental background are presented. Reactivity and orientation - the fundamental questions concerning synthetical applications of VNS - are discussed in light of the supposed mechanistic picture.
    Additional Material: 8 Ill.
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  • 106
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    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 291-291 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: No Abstract
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  • 107
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    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 362-376 
    ISSN: 0894-3230
    Keywords: highly strained cyclophanes ; reactivity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: An essential feature of the concept of aromaticity has been the stability and lack of reactivity of aromatics relative to that of other unsaturated compounds. Contrary to this general experience, high and unusual reactivity is encountered when simple, monocyclic benzene rings are bent by short bridges into a boat-shaped conformation, as is the case in small [n] paracyclophanes (n ≤ 8) and [n]metacyclophanes (n ≤ 7). This is illustrated, mostly with examples taken from the authors' own work, for thermal and photochemical behavior and reactions with electrophiles, nucleophiles and dienophiles. © 1998 John Wiley & Sons, Ltd.
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  • 108
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 356-361 
    ISSN: 0894-3230
    Keywords: heterogeneous catalysis ; organic reactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A decade's worth of work is reviewed: building on the demonstrated prowess of heterogeneous catalysis in industrial organic chemistry, the author's laboratory devised efficient catalysts for a number of organic reactions, based on aluminosilicates such as clays and zeolites. This review also spells out, at a time when creative research is overshadowed by imitative research, some of the methodological musts that also happen to characterize physical organic chemistry: the devising of experiments so that accurate numerical data can be obtained; the importance of remote, interdisciplinary connections; the need for estrangement from stereotypic preconceptions that may obscure the true explanations for the phenomena; and the over-riding need for concerning oneself only, or at least predominantly, with the important facts that nature tells, if one cares to listen. © 1998 John Wiley & Sons, Ltd.
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  • 109
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    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 292-298 
    ISSN: 0894-3230
    Keywords: flash-photolysis ; short-lived reaction intermediates ; mandelic acid ; keto-enol tautomers ; enzyme-catalyzed racemization ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The advantage of adding more structure-diagnostic information to the simple detection of flash photolytically generated transient species by changes in UV-visible light absorbance is illustrated by a case study involving the mandelic acid keto-enol system. An early report based on preliminary evidence proposed that flash photolysis of phenyldiazoacetic acid produces the enol of mandelic acid by hydration of phenylhydroxyketene, itself generated by a photo-Wolff reaction of the diazo acid. Further examination, however, shows that this is only a minor route, and that the major pathway is a new enol-forming reaction involving what appears to be hydration of a carboxycarbene formed by dediazotization of the diazo compound. Hydration of phenylhydroxyketene is nevertheless the reaction by which mandelic acid enol is generated when esters of benzoylformic acid are the flash photolysis substrates. These mechanisms, and also identification of the enol as a tranisent species, are supported by detailed arguments involving acid-base catalysis, solvent isotope effects, and the use of oxygen-18 as a tracer. The work produces a keto-enol equilibrium constant for the mandelic acid system, pKE  =  16.19, and also acidity constants of the enol ionizing as an oxygen acid, pKEa  =  6.39, and the keto isomer ionizing as a carbon acid, pKKa  =  22.57. The bearing of these results on the enzyme-catalyzed racemization of mandelic acid is discussed. © 1998 John Wiley & Sons, Ltd.
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  • 110
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 1-9 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new way of analyzing measured or calculated vibrational spectra in terms of internal vibrational modes associated with the internal parameters used to describe geometry and conformation of a molecule is described. The internal modes are determined by solving the Euler-Lagrange equations for molecular fragments φn described by internal parameters ζn. An internal mode is localized in a molecular fragment by describing the rest of the molecule as a collection of massless points that just define molecular geometry. Alternatively, one can consider the new fragment motions as motions that are obtained after relaxing all parts of the vibrating molecule but the fragment under consideration. Because of this property, the internal modes are called adiabatic internal modes, and the associated force constants ka, adiabatic force constants. Minimization of the kinetic energy of the vibrating fragment φn yields the adiabatic mass ma (corresponding to 1/Gnn of Wilson's G matrix) and, by this, adiabatic frequencies ωa. Adiabatic modes are perfectly suited to analyze and understand the vibrational spectra of a molecule in terms of internal parameter modes in the same way as one understands molecular geometry in terms of internal coordinates.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 1-9, 1998
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  • 111
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 133-141 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We explore the viability of a time-independent quantum adiabatic switching algorithm in the Fourier grid Hamiltonian (FGH) framework in the presence of degeneracy, avoided crossing, and chaos. The algorithm is simple and cost effective and provides information about the full eigenspectrum of the evolving Hamiltonian. It is shown to be capable of capturing accurately the change in the pattern of level spacing distribution statistics as one switches from a nonchaotic region of parameter values into the chaotic region. The Transition turns out to be less sharp than anticipated.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 133-141, 1998
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  • 112
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 175-185 
    ISSN: 0020-7608
    Keywords: potential dependence ; vibrational frequency ; coinage metal electrodes ; relativistic effects ; density functional calculation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The adsorptive properties of cyanide (CN-) on coinage metal (M) electrodes (M=Cu, Ag, Au) have been investigated using a relativistic density functional method. The way to model the electrochemical potential applied to the electrodes is to consider the systems in the presence of a perturbative external field F. The field-perturbative approach is proven to be a suitable method in interpreting the observed spectral shifts with electrode potential. The calculated potential-dependent shifts of ωM(SINGLE BOND)CN and ωC(SINGLE BOND)M are similar for the three metals, in agreement with experiment observations. The relativistic effects are required to account for the similarity in the frequency shifts of ωM(SINGLE BOND)CN. The calculated vibrational tuning rates dωC(SINGLE BOND)N/dF are 6.61×10-7, 6.61×10-7, and 5.64×10-7 cm-1/(V/cm) for M=Cu, Ag, and Au, respectively. The coupling of the M(SINGLE BOND)CN and C(SINGLE BOND)N internal modes contributes significantly (about 25%) to the size of the frequency shifts ΔωC(SINGLE BOND)N of the ligand. The effect of electric fields on the metal(SINGLE BOND)CN- bonding is also investigated. It is shown that changes in the magnitude of CN- to the metal donation and M(SINGLE BOND)CN bond strength occur under the influence of the electric field.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 175-185, 1998
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  • 113
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 205-219 
    ISSN: 0020-7608
    Keywords: coupled-cluster theory ; electron correlation effects ; molecular orbital choice ; reference determinant choice ; quasi-degenerate states ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The impact of the choice of molecular orbital sets on the results of single-reference-state coupled-cluster (CC) methods was studied for the H4 model. This model offers a straightforward way of taking into account all possible symmetry-adapted orbitals. Moreover, the degree of quasi-degeneracy of its ground state can be varied over a wide range by changing its geometry. The CCD, CCSD, and CCSDT approaches are considered. Surfaces representing the dependence of the energy on the parameters defining the orbitals are obtained. It is documented that for every method there exist alternative orbital sets which allow one to obtain more accurate energies than the standard (HF, BO, and NO) ones. However, for many of the former orbital sets, one obtains relatively large one-body amplitudes or one may encounter problems with solving the CC equations by conventional methods. An interesting variety of orbitals which might be useful for studies of quasi-degenerate states by the CCD method was found.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 205-219, 1998
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  • 114
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 239-250 
    ISSN: 0020-7608
    Keywords: coupled-cluster theory ; electron correlation effects ; molecular orbital choice ; reference determinant choice ; quasi-degenerate states ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Model studies of the impact of the choice of molecular orbital sets on the accuracy of the results of the state-universal coupled-cluster method involving one- and two-body excitations (SU-CCSD) were performed for the H4 model, which offers a straightforward way of representing any symmetry-adapted orbitals as well as the possibility of varying over a wide range the degree of quasi-degeneracy of a state. Energies of the three lowest 1A1 states obtained for 13 sets of standard quantum chemical orbitals as well as for a vast variety of nonstandard orbital sets defined by nodes of a two-dimensional grid are compared. It is shown that there exist nonstandard orbital sets that allow one to obtain more accurate energies than the standard orbital sets. It is also demonstrated that the recently defined [K. Jankowski et al., Int. J. Quantum Chem. 67, 221 (1998)] maximum proximity orbitals (MPO) yield more accurate results than any other of the commonly applied orbital sets. These orbitals are especially effective outside the strong-quasi-degeneracy region.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 239-250, 1998
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  • 115
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 341-341 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 116
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 221-237 
    ISSN: 0020-7608
    Keywords: coupled-cluster theory ; electron correlation effects ; molecular orbital choice ; reference determinant choice ; quasi-degenerate states ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The impact of the choice of molecular orbital sets on the results of the valence-universal coupled cluster method involving up to three-body amplitudes (VU-CCSDT) was studied for the H4 model. This model offers a straightforward way of representing all possible symmetry-adapted orbitals. Moreover, the degree of quasi-degeneracy of its lowest 1A1 states can be varied over a wide range by changing its geometry. Calculations were performed both for 13 sets of standard quantum chemical orbitals and for a vast variety of nonstandard orbital sets defined by nodes of a two-dimensional orbital grid. The performance of various standard orbital sets in VU-CCSDT calculations is compared. It is also documented that for every quasi-degeneracy region there exist nonstandard orbital sets which allow one to obtain more accurate VU-CCSDT energies than the standard orbital sets. In an attempt to provide a general interpretation for some of the alternative orbital sets, we defined a set of orbitals which maximize the proximity of the model and target spaces - maximum proximity orbitals (MPO). It is demonstrated that outside the strong quasi-degeneracy region the energies obtained for the VU-CCSDT approach based on the MPOs are more accurate than for the standard orbital sets.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 221-237, 1998
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  • 117
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 273-285 
    ISSN: 0020-7608
    Keywords: Lanczos propagation ; laser-molecule interaction ; Chebyshev propagation ; time-dependent Schrödinger equation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two Lanczos subspace propagation techniques are discussed in this work and compared with the Chebyshev method applied to the original Hamiltonian matrix. Both procedures involve the use of a reduced propagator in the Lanczos subspace to calculate the solution to the time-dependent Schrödinger equation but differ in the way the propagator is evaluated. The LSC (Lanczos subspace Chebyshev) expresses the propagator in terms of Chebyshev polynomials that are functions of the tridiagonal Hamiltonian matrix in the Lanczos space. In contrast, the LSV (Lanczos subspace variational) is implemented by solving the eigenproblem in the Lanczos subspace and then performing a variational expansion of the propagator in the M-dimensional eigenvector space. Although the LSV is the same as the reduced propagator scheme proposed by Park and Light, in the present study the LSV is implemented as a one-step long-time propagator. As a numerical example, the interaction of a molecule with a strong laser pulse is investigated. The Hamiltonian is explicitly time dependent in this case, and thus the stationary formalism is employed in this work to solve the time-dependent Schrödinger equation. Application of either the LSC or LSV yields a wave function in the M-dimensional Lanczos subspace. Nonetheless, the transition amplitudes computed from this wave function are in excellent agreement with those calculated by direct application of the Chebyshev method in the original space used to define the Hamiltonian matrix.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 273-285, 1998
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  • 118
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    International Journal of Quantum Chemistry 67 (1998), S. 299-309 
    ISSN: 0020-7608
    Keywords: space symmetry ; periodic ; Bloch functions ; irreducible representations ; crystalline orbitals ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computational procedure for generating space-symmetry-adapted Bloch functions (BF) is presented. The case is discussed when BF are built from a basis of local functions (atomic orbitals [AOs]). The method, which is completely general in the sense that it applies to any space group and AOs of any quantum number, is based on the diagonalization of Dirac characters. For its implementation, it does not require as an input character tables or related data, since this information is automatically generated starting from the space group symbol and the AO basis set. Formal aspects of the method, not available in textbooks, are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 299-309, 1998
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  • 119
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 67 (1998), S. 329-338 
    ISSN: 0020-7608
    Keywords: progesterone ; 5α-progestins ; allopregnanedione ; allopregnanolone ; tetrahydroprogesterone ; electronic structure ; ab initio calculations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Progesterone (P) yields to 5α-reduced progestins, namely 5α-pregnanedione (DHP), tetrahydroprogesterone (THP), and allopregnanolone (ALLO-P). The geometries and electronic structure of these steroids were assessed by ab initio calculations using the 6-31G* basis set. The parameters measured were bond distances, valence angles, and dihedral angles. Likewise, the following were calculated: total energy; frontier orbitals, i.e., highest occupied molecular orbital (HOMO); lowest unoccupied molecular orbital (LUMO); dipole moment; atomic charges; and electrostatic potentials. The frontier orbitals of P were located at the π-double bond. However, the HOMO of the 5α-progestins was extended into the molecule, while the LUMO was confined at the C20 carbonyl group. The atomic charges, electronic density surfaces and electrostatic potentials showed patterns according to the stereochemical arrangement of the C3 and C20 carbonyl and hydroxyl functional groups. Interestingly, P and THP showed the larger dipole moment and high electronic density at the A-ring because the double bond and the 3α-hydroxy group, respectively. The present results might explain to some extent the metabolism of the studied progestins. Similarly, some physicochemical properties, such as dipole moments and electrostatic potentials, seem related with important biological actions such as uterine contractility and control of gonadotropin secretion.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 329-338, 1998
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  • 120
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    International Journal of Quantum Chemistry 67 (1998), S. 321-328 
    ISSN: 0020-7608
    Keywords: geometrically active atomic states ; shape of atomic states ; molecular formation ; molecular shape ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a theory of molecular formation according to which the shape of polyhedral or coordination compounds is fixed to a very good approximation by the shape of a particular state (or states) of the central atom, which is activated by spin and spacial coupling of optimal strength between this state, called the geometrically active atomic state (GAAS) and the state of the ligands. For a molecule with a central atom, spacial coupling of optimal strength, means that the shape of the GAAS fixes the position of the ligands according to the maximum overlap principle of the Heitler-London, Slater, and Pauling theory of covalent bonding, whereby much of the energy lowering from the free atom limit is obtained by the maximization of the contribution of the exchange integrals. Hence, a direct causal relationship between the shape of the GAAS and the shape of the molecular state at equilibrium seems to exist. This relationship implies a picture of diabatic connection between the geometrically asymptotic region and the equilibrium region, which is driven by the coupled GAAS and provides the “why” of molecular shape. Since the latter is fixed by the shape of the GAAS (in cases of electronic complexity or of molecular instability it is possible that more than one GAAS contribute simultaneously), prediction of the shape of certain large systems can be made based on the a priori recognition of the corresponding GAAS. The concept of the shape of atomic states defined and computed quantum mechanically from the probability distribution ϱ(cos θ12) of the angle θ12 that the position vectors of two electrons form in the given atomic state. Specifically, it is deduced from the distribution's maxima which provide the most probable values of θ12. As shown previously [Y. Komninos and C. A. Nicolaides, Phys. Rev. A 50, 3782 (1994)], ϱ(cos θ12) is obtainable directly from the state-specific expression for the Coulomb interaction, where the Rk integrals are replaced by Legendre polynomials Pk, multiplied by normalization constants and radial overlaps. The theory is demonstrated by explaining the shape of BeH2, BH2, CH4, SiH4, H2O, H2S, NH3, PH3, SF6, and TiH4 in terms of the shapes of the following GAAS. Be: 2s2p 3P0, B: 2s2p2 4P, C: 2s2p3 5S0, Si: 3s3p3 5S0, O: 2s2p5 3P0, S: 3s23p33d 3P0, N: 2s2p4 4P, P: 3s3p33d 4P0, S: 3s3p33d2 7F0, and Ti: 3d24s4p 5G0.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 321-328, 1998
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  • 121
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    International Journal of Quantum Chemistry 67 (1998), S. 367-376 
    ISSN: 0020-7608
    Keywords: density functional applications ; cyclooctatetraene ; oxepin ; anti-aromaticity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We describe by ab initio calculations several rings containing eight π electrons, forced into planarity by altering the balance of strain with fused rings. These include a tricyclic fused-cyclopropano ring derivative of cyclooctatetraene suggested by Ermer to be planar in its ground state, an analogous tricyclic oxepin, and cyclobutano ring-fused cyclooctatetraene previously described experimentally. We verify that cyclopropano ring fusion planarizes rings with eight π electrons; however, by bond alternation and magnetic susceptibility suppression, forming the planar ring leaves the system anti-aromatic.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 367-376, 1998
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  • 122
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    International Journal of Quantum Chemistry 67 (1998), S. 399-409 
    ISSN: 0020-7608
    Keywords: Au ; Pt ; H2 adsorption ; AuPt clusters ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Linear and triangular AuPtn cluster reactions with H2 are studied theoretically, using ab initio multiconfiguration self-consistent field (MC-SCF) calculations, followed by extensive multireference configuration interaction (MR-CI) variational and perturbative. Both the linear dimer and the triangular trimers capture the hydrogen molecule by the Pt cluster side and by the Au cluster side. Gold has an electronic effect on the Pt activity, more important than a geometrical one, poisoning the Pt activity to dissociate H2 and lowering the adsorption heats. This effect is stronger in the AuPt dimer, where the H2 capture occurs only at the molecular level, without showing hydrogen bond dissociation. The trimers look more active, relaxing the H(SINGLE BOND)H bond until breakage. No activation barriers are observed in all the cases considered. The hydrogen molecule is not able to cross the clusters due to the large barriers present.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 399-409, 1998
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  • 123
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    International Journal of Quantum Chemistry 68 (1998), S. 253-259 
    ISSN: 0020-7608
    Keywords: H2O dissociation ; ab initio calculations ; hydronium ion ; hydroxil ion ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A reaction mechanism of water dissociation is proposed where solvent effects are accounted for via a minimum stable model that considers the interaction of five water molecules. It is based on the fully self-consistent field (SCF) optimized structures of the reactant, product, and transition state, the calculations being at the Hartree-Fock and configuration interaction level [Møller-Plesset second-order perturbation (MP2) and coupled-cluster single and double excitations (CCSD)]. They were performed with four different basis sets that included polarized and diffuse orbitals. The dissociative mechanism leads to the ionic species OH-+H3O+ as stable products and upon analysis of the energy hypersurface, a transition state is found which yields an activation barrier of 21.2 kcal/mol. This value is in good agreement with the experimentally determined enthalpy for the reaction. The contribution of the aggregation energy is emphasized.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 253-259, 1998
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  • 124
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    International Journal of Quantum Chemistry 68 (1998), S. 285-291 
    ISSN: 0020-7608
    Keywords: tight-binding ; band spectrum ; orbital nonorthogonality ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A one-dimensional one-band model is presented which enables a tight-binding calculation to be performed with full rigor. All the multicenter integrals involved in the calculation of the Hamiltonian matrix elements can be analytically computed in terms of a single parameter: the ratio between the lattice spacing and the extension of the “atomic” wave function. Moreover, the exact expression for the spectrum shows how the usual approximations of limiting the range of interactions and neglecting the nonorthogonality of the basis set degrade the results of the calculations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 285-291, 1998
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  • 125
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    International Journal of Quantum Chemistry 68 (1998), S. 273-284 
    ISSN: 0020-7608
    Keywords: C40 cluster molecule ; C40H4 cluster molecule ; C40X4 cluster molecule ; PM3 semiempirical molecular orbital method ; structures of geometrical optimization ; ionization potential ; energy gap ; heat of formation ; atomization energy ; vibration frequency ; 1,3,5,7-tetrahaloadamantane molecules ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Herein we demonstrate that the C40 cluster molecule is easily formed to Td symmetry structure and its ground state is 5A2 open shell with four unpaired electrons. These four unpaired electrons are located at the tip points of the Td symmetry structure. This work also indicates that these four unpaired electrons can easily react with a single valence atom, such as hydrogen or halogen atoms, to form a stable carbon hydrogen cluster molecule, C40H4, and carbon halogen cluster molecules, C40X4 (X=F, Cl, Br, I), respectively. The PM3 semiempirical molecular orbital method from Gaussian 94W computer program package was applied very well to these cluster molecules. According to the results in this study, the structures of geometrical optimization, ionization potential, energy gap, heat of formation, atomization energy, vibration frequency, and the remaining data of C40H4 and C40X4 cluster molecules. The above-calculated data prove that these unknown cluster molecules are stable and have a stable capacity similar to 1,3,5,7-tetrahaloadamantane molecules. They can be possibly synthesized experimentally in the near future.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 273-284, 1998
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  • 126
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    International Journal of Quantum Chemistry 68 (1998), S. 261-271 
    ISSN: 0020-7608
    Keywords: SN2 reaction ; reaction path Hamiltonian ; intrinsic reaction coordinate ; reaction path curvature ; ab initio calculation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To obtain essential information on the reaction dynamics for the prototype gas-phase SN2 reaction Cl-+CH3Cl→ClCH3+Cl-, the characteristic features of the potential energy surface in the local region around the reaction path were examined by the reaction path Hamiltonian constructed with high-level ab initio molecular-orbital calculations. After the structures of relevant stationary states and the intrinsic reaction coordinate were determined, the transverse vibrational modes, the corresponding frequencies, and the coupling elements between the pairs of normal modes induced by the reaction coordinate motion were calculated at each point along the intrinsic reaction coordinate. It was found that a quite large reaction path curvature appears in the intrinsic barrier slope near the bottom of each of the pre- and postreaction stable-state complexes. This large curvature was clarified to cause the internal vibrational excitation of the products and the requirement of the vibrational excitation of the reactants for reaction occurrence. The complex recrossings across the transition-state theory dividing surface, previously characterized by Hase et al. [J. Chem. Phys. 96, 8275 (1992)] in which trajectories trapped in the Cl-(DOTTED BOND)CH3Cl complex return to the central barrier region, were demonstrated to be attributed to this large curvature. Furthermore, not only the variational effects but also the reaction path curvature effects on the intermediate recrossings that were also characterized by Hase et al., in which trajectories linger near the central barrier, were found to be negligible.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 261-271, 1998
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  • 127
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    International Journal of Quantum Chemistry 68 (1998), S. 293-304 
    ISSN: 0020-7608
    Keywords: multiconfigurational SCF approach ; electron correlation ; high-symmetric molecules ; fullerene ; group theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A symmetry-adapted multiconfiguration self-consistent field (MC SCF) approach aimed at calculations of high-symmetry molecules is proposed. The self-consistency procedure applicable to the molecular terms of any symmetry and multiplicity is developed. It holds the symmetry transformation properties of varied molecular orbitals, thus taking advantage of the relationships within the set of two-electron integrals through molecular invariants. For orbital optimization, a unified coupling operator is constructed on the basis of the pseudosecular method providing for efficient convergence to energy minimum. Based on the group-theory technique, computer codes have been developed for straightforward determination of the invariant expansions for two-electron integrals and configuration interaction (CI) matrix elements. Calculated in this way, the expansion coefficients are presented for the three-electron states that originate from joint t1u and t1g shells of an icosahedral fullerene C60, the case important for the calculations of anion C603- representing the charge state of the fullerene molecule in the superconducting ionic solids K3C60 or Rb3C60. The results of MC SCF calculations for lowest quasi-π-electronic states of C603- are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 293-304, 1998
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  • 128
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    International Journal of Quantum Chemistry 68 (1998), S. 305-315 
    ISSN: 0020-7608
    Keywords: Boys function ; molecular integrals over Gaussian functions ; computation of Boys function ; error function erf(x) ; electron repulsion integrals ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We propose a new expansion for the Boys function ∫01t2jexp(-r2t2) dt appearing in the calculation of molecular two-electron matrix elements if Gaussian basis sets are employed. This expansion involves a power series involving the terms Ci, j(τ) (r2-R2)i multiplied by exp(-τr2), where τ is an optimized parameter τ∊[0, 1]. The performances of the introduced expansion are discussed and illustrated by some numerical experiments. It appears that the proposed expansion is considerably shorter than the customary Taylor series, which in turn is the special case for τ=0. This is of some importance, particularly for higher j values. Further, the proposed expansion enables a single expression for calculating erf(x) for the whole range of variable x. The recursive relations for the expansion coefficients are derived and the truncation errors are estimated. A new method for calculating the Boys function by means of asymptotic series is represented too.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 305-315, 1998
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  • 129
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    International Journal of Quantum Chemistry 68 (1998), S. 357-384 
    ISSN: 0020-7608
    Keywords: completeness ; Gaussian ; orbital ; geminal ; basis set ; Sobolev ; axial symmetry ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Completeness theorems for Gaussian orbital and geminal basis sets of axial symmetry are proved in the space L2 of square integrable functions and in the first and second Sobolev spaces H1 and H2.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 357-384, 1998
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  • 130
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    International Journal of Quantum Chemistry 69 (1998), S. 201-208 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio Hartree-Fock crystal-orbital calculations on three ideal fullerite C60 crystals doped with strontium (C60SrN, where N=2, 3, 6) are reported. C60Sr3 is calculated here to be a semiconductor; C60Sr2, a zero-gap semiconductor, and C60Sr6, a one-dimensional metal. The C60SrN are found to be highly ionic as well: The total charge transfers are 3.444, 4.956, and 9.228 e for N=2, 3, and 6, respectively. The possible mechanisms of the observed superconductivity in C60Sr6 are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 201-208, 1998
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  • 131
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    International Journal of Quantum Chemistry 67 (1998), S. 311-320 
    ISSN: 0020-7608
    Keywords: space symmetry ; periodic ; Bloch functions ; irreducible representations ; crystalline orbitals ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The use of symmetry-adapted crystalline orbitals (SACOs) in self-consistent-field (SCF) schemes for infinite periodic systems is discussed and documented with reference to many examples. The symmetry information generated during the SACOs construction is used to illustrate some particular features of the computational procedure at special points in the brillouin zone (BZ). An example is also given for the description in terms of irreducible representations of the beryllium band structure. It is shown that the exploitation of point symmetry reduces the cost of the SCF process by more than one order of magnitude in systems with a large number of atoms per unit cell and high number of point symmetry operators.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 311-320, 1998
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  • 132
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    International Journal of Quantum Chemistry 67 (1998), S. 287-297 
    ISSN: 0020-7608
    Keywords: valence bond theory ; symmetric group approach ; paired-permanent-determinant ; ab initio ; nonorthogonal ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new algorithm for nonorthogonal valence bond (VB) method is presented by using symmetric group approach. In the present algorithm, a new function, called paired-permanent-determinant (PPD), is defined, which is an algebrant and has the same symmetry of a corresponding VB structure. The evaluation of a PPD is carried out by using a recursion formula similar to the Laplace expansion method for determinants. An overlap matrix element in the spin-free VB method may be obtained by evaluating a corresponding PPD, while the Hamiltonian matrix element is expressed in terms of the products of electronic integrals and sub-PPDs. In the present work, some important properties of PPDs are discussed, and the primary procedure for the evaluation of PPD is deduced. Furthermore, the expressions for evaluating both the overlap and Hamiltonian matrix elements are also given in details, which are essential to develop an efficient algorithm for nonorthogonal VB calculations. In the present study, some further effective technical considerations will be adopted, and a new ab initio VB program will be introduced.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 287-297, 1998
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  • 133
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    International Journal of Quantum Chemistry 68 (1998), S. 329-350 
    ISSN: 0020-7608
    Keywords: HeH- ; comparative study of errors ; SCF ; electron correlation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Basis set truncation error (BSTE), size extensivity Error (SEE), zero point vibrational energy (ZPVE), and basis set superposition error (BSSE) of HeH- weak van der Waals interaction energy were determined and compared at the self-consistent field (SCF), many-body perturbation theory (MBPT), and coupled cluster (CC) methods using even-tempered functions. Isotope substitution effects and the role of bond function augmentation were taken into account. Apart from core correlation energy error (CCEE), which is absent from HeH- interaction energy, the results confirm that BSTE is the most important source of error, followed by SEE of the truncated configuration interaction (CI) expansion, ZPVE and BSSE in a descending order. Introducing quadrable excitations to the truncated CI expansion reduces the magnitude of SEE by ∼45.7%, and BSSE correction is not necessary even at the electron correlation level. While bond function augmentation reduces BSSE at the Hartree-Fock, it has an oscillating behavior at the electron correlation level.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 329-350, 1998
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  • 134
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    International Journal of Quantum Chemistry 68 (1998), S. 405-413 
    ISSN: 0020-7608
    Keywords: S-states of two electron atoms ; correlated basis function ; factored wave functions ; one- and two-body densities ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A simple and accurate variational wave function in which the dependence in the interelectronic distance is factored is proposed to describe S-type states of two-electron atomic systems. We introduce a parameterization which generalizes the previous ones used in this same framework and which allows us to obtain in a simple way the wave function of both symmetric and antisymmetric excited states. We performed a systematic analysis of some exact properties such as the virial theorem and the cusp conditions and a study of both the one- and two-body densities. Finally, a comparison among the different correlation functions for these states was performed for helium.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 405-413, 1998
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  • 135
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    International Journal of Quantum Chemistry 68 (1998), S. 415-419 
    ISSN: 0020-7608
    Keywords: LiBeH3-y ; band structure ; hydrogen vacancy ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present work, the band structure calculations on LiBeH3-y were carried out by employing the tight-binding method based on the extended Hückel molecular orbital (EHMO) approach, and the effect of hydrogen vacancies on the electronic structure of the system was studied. For LiBeH3 without hydrogen vacancies, its band structure has an energy gap of about 2.5 eV near the Fermi level, which reveals that it is a semiconductor or an insulator. If hydrogen vacancies are involved in the system, they result in a downward displacement of the band structure of LiBeH3-y and cause its total density of states at the Fermi level to be increased. In this case, there is no energy gap near the Fermi level and the total density of states for LiBeH3-y bears a strong resemblance to that for a high-temperature superconductor, which implies that LiBeH3-y is similar to a high-temperature superconductor in physical property.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 415-419, 1998
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  • 136
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    International Journal of Quantum Chemistry 69 (1998), S. 1-1 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 137
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    International Journal of Quantum Chemistry 68 (1998), S. 421-429 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio Hartree-Fock crystal orbital quantum chemical calculations on various structural models of three-dimensional crystals of trans-polyacetylene and polythiophene were carried out. The results provide insight into the actual structure and symmetry of the crystalline polymers under study, which are not easily amenable to experimental determination. Both conducting polymers under study were calculated to form crystals with monoclinic unit cells. A possible molecular basis of the specific electronic properties of these polymers is discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 421-429, 1998
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  • 138
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    International Journal of Quantum Chemistry 69 (1998), S. 11-19 
    ISSN: 0020-7608
    Keywords: ab initio excitation energy ; five-coordinate vanadate ; ribonuclease active site ; effective fragment potential ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Knowledge of the ionicity of the phosphorane intermediate is important to the analysis of the microscopic mechanism of the hydrolysis of the phosphate ester bond by ribonuclease A (RNase A). Five-coordinate uridine vanadate, an analog of the phosphorane, binds to RNase A as the monoanion. The absorption spectra of the vanadate is a probe of the electronic structure of the active site. An in vacuo theoretical model of H4VO5- is calculated to have transitions only in the far ultraviolet (UV). However, H2VO5C2H4- has one in the near UV as well as others further into the UV. The transition energy of the monoanion calculated in the field of the protein active site with effective fragment potentials shifts modestly to the red. Broad monoanion absorptions are predicted which would overlap an observed incomplete very broad absorption attributed to the complex of uridine vanadate with RNase A. The absorption bands of neutral ethylene glycol vanadate are predicted to be further to the red but also overlap the experimental absorption.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 11-19, 1998
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  • 139
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    Keywords: pharmacophore ; DISCO ; conformational analysis ; antiarrhythmic agents ; dofetilide ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Blockade of cardiac-delayed rectifier potassium current (IKr) is an important mechanism for Class III antiarrhythmic effect. We developed pharmacophores for IKr inhibitors starting from structures of known blockers. To obtain the pharmacophores, DISCO module of SYBYL was used. Conformations required for DISCO computations were provided by Multisearch type conformational analyses. A common five-point three-dimensional relationship was identified for the most active compounds, whereas a four-point pharmacophore forming a subset of the former one, could be developed for less potent agents.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 21-30, 1998
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  • 140
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    International Journal of Quantum Chemistry 69 (1998), S. 3-10 
    ISSN: 0020-7608
    Keywords: neuron ; Hilbert space ; quantum computer ; computational modeling ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computational model of charge transfer through an associated polyenic system is presented. This model is based on proposed transient alignment of adjacent ethylenes of phospholipid diacyls in the neural membrane. Influx of anions and cations into the cytosol at ∼108 ions/s at ligand-gated channels hypothetically establishes the conditions for charge transfer through adjacent diacyl ethylenes. It is suggested that this process produces interactions between phospholipid potential energy hypersurfaces. These interactions operating in many-dimensional (Hilbert) space represent a form of massively parallel computation. Basic theoretical principles of quantum computing relevant to the present model are briefly discussed. A preliminary computational model of charge transfer through stacked ethylenes is then presented. In this model molecules were aligned with planes parallel and perpendicular. Singly charged counterions were positioned at the ends of the stacks and ab initio Hartree-Fock calculations at the 6-31+G(d, p) level were carried out. Degree of charge transfer between counterions was monitored by Mulliken population analysis from which atomic charges and dipole moments were calculated. The results of these calculations are interpreted in a larger neurobiological context. Models are proposed which relate the charge-transfer process to ion channel dynamics (open/closed), changes in membrane potential, and macroscopic memory systems. A hypothetical feedback circuitry which could regulate membrane potential and prevent recurrent excitation or hyperpolarization is described. Potential tests of the model utilizing photoinduced charge transfer through a polyenic molecular wire are proposed. It is concluded that this research could lead to a better understanding of computational processes in neurophysiology and cognition.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 3-10, 1998
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  • 141
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    International Journal of Quantum Chemistry 69 (1998), S. 31-35 
    ISSN: 0020-7608
    Keywords: iron-porphyrin ; density functional calculations ; oxyheme ; heme models ; Car-Parrinello molecular dynamics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Minimum-energy structures of O2, CO, and NO iron-porphyrin (FeP) complexes, computed with the Car-Parrinello molecular dynamics, agree well with the available experimental data for synthetic heme models. The diatomic molecule induces a 0.3-0.4 Å displacement of the Fe atom out of the porphyrin nitrogen (Np) plane and a doming of the overall porphyrin ring. The energy of the iron-diatomic bond increases in the order Fe(SINGLE BOND)O2 (9 kcal/mol) 〈 Fe(SINGLE BOND)CO (26 kcal/mol) 〈 Fe(SINGLE BOND)NO (35 kcal/mol). The presence of an imidazole axial ligand increases the strength of the Fe(SINGLE BOND)O2 and Fe(SINGLE BOND)CO bonds (15 and 35 kcal/mol, respectively), with few structural changes with respect to the FeP(CO) and FeP(O2) complexes. In contrast, the imidazole ligand does not affect the energy of the Fe(SINGLE BOND)NO bond, but induces significant structural changes with respect to the FeP(NO) complex. Similar variations in the iron-imidazole bond with respect to the addition of CO, O2, and NO are also discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 31-35, 1998
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  • 142
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    International Journal of Quantum Chemistry 69 (1998), S. 37-47 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio quantum chemical studies at the HF and MP2 levels with the 6-31G* basis set were performed for H-bonded isocytosine-cytosine standard Watson-Crick base pairs (denoted as iCC1) in the gas phase and in a water solution. Full geometry optimizations at the HF level without any constraints on the planarity of these complexes were carried out. The water solution was modeled by the explicit inclusion of one, two, four, and six water molecules. Six waters create the first full coordination sphere around the iCC1 base pair. All potentially possible hydration positions of the iCC1 base pair with one and two water molecules were considered. The interaction and solvation energies were corrected for the basis-set superposition error by using the full Boys-Bernardi counterpoise correction scheme. It was shown that inclusion of six instead of one, two, or four water molecules has a crucial effect on the geometry of the iCC1 base pair. In the case of six water molecules, the iCC1 moiety becomes strongly nonplanar, while in the case of a smaller number of water molecules, it deviates only slightly from the planar conformation as is adopted in the gas phase. Based on the results of these calculations, the nature of the specific H-bonding interactions, solvation effects, and the interaction energies are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 37-47, 1998
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  • 143
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    International Journal of Quantum Chemistry 69 (1998), S. 77-88 
    ISSN: 0020-7608
    Keywords: molecular dynamics ; binding free energy ; structure-based ligand design ; linear response ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently developed method for predicting binding affinities in ligand-receptor complexes, based on interaction energy averaging and conformational sampling by molecular dynamics simulation, is presented. Polar and nonpolar contributions to the binding free energy are approximated by a linear scaling of the corresponding terms in the average intermolecular interaction energy for the bound and free states of the ligand. While the method originally assumed the validity of electrostatic linear response, we show that incorporation of systematic deviations from linear response derived from free energy perturbation calculations enhances the accuracy of the approach. The method is applied to complexes of wild-type and mutant human dihydrofolate reductases with 2,4-diaminopteridine and 2,4-diaminoquinazoline inhibitors. It is shown that a binding energy accuracy of about 1 kcal/mol is attainable even for multiply ionized compounds, such as methotrexate, for which electrostatic interactions energies are very large.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 77-88, 1998
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  • 144
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    International Journal of Quantum Chemistry 69 (1998), S. 105-116 
    ISSN: 0020-7608
    Keywords: bacteriorhodopsin ; protein: lipid interactions ; α-helices ; molecular dynamics ; membrane protein tertiary structure prediction ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The two-stage model of membrane protein folding predicts that isolated transmembrane α-helices form stably in the bilayer before coming together to form the fully functional protein. Insight into the molecular implications of this model are possible with detailed molecular dynamics calculations. Thirty molecular dynamics simulations of both individual and pairs of α-helices from bacteriorhodopsin were calculated with the CHARMm program. This data base will continue to grow and expand. Already, differences between identical helices in different media and different helices in the same media have been found. The current results are summarized in this contribution.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 105-116, 1998
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  • 145
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    International Journal of Quantum Chemistry 69 (1998), S. 117-128 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The requirements for H2-antagonist activity so far identified for most of the known antagonists of histamine are the presence of a heterocyclic ring containing a basic center linked via a methylene chain to a substituted guanidine or thiourea polar side chain. Metiamide is a potent H2 antagonist (pA2=6.06). We have used the ab initio Hartree-Fock (HF) method in order to study the conformational properties of the N3(SINGLE BOND)H tautomers of metiamide molecule and histamine monocation. Three basis set (the 3-21G*, 6-31G**, and 6-31+G**) were used, the results compared, and the geometric parameters fully optimized. Our results indicate the preference of metiamide for a folded conformation with an intramolecular hydrogen bonding between the imidazole ring and one of the NH groups. The optimized geometrical parameters and charge distributions of both molecules, using the Mulliken, and natural bond order (NBO) analysis, are given and discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 117-128, 1998
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  • 146
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    International Journal of Quantum Chemistry 69 (1998), S. 145-149 
    ISSN: 0020-7608
    Keywords: density functional theory ; reduced density gradients ; self-consistent density equation ; generalized Thomas-Fermi approximation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We prove the following results, relevant for the density functional theory: the Thomas-Fermi-Dirac theory, generalized to include the contribution due to the high electron density result of Gell-Mann and Brueckner for the correlation energy, is shown to lead to a differential equation for the self-consistent ground-state density n(r) in atoms and molecules in the form F(n, {∇n/n}2, ∇2n/n)=1, where the function F is given explicitly. A straightforward extension yields a similar result for the equation determining the Pauli plus exchange-correlation potential and for the divergence of the many-electron force.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 145-149, 1998
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  • 147
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    International Journal of Quantum Chemistry 69 (1998), S. 151-158 
    ISSN: 0020-7608
    Keywords: BSSE ; SCF-MI ; intermolecular interactions ; analytic gradient Hessian ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A modification of the Roothaan equations was described in a previous work, which aimed to avoid the BSSE at the Hartree-Fock level of theory. The resulting scheme was called the self-consistent field for molecular interactions (SCF-MI) to underline its special usefulness in the computation of intermolecular interactions. The method provides a complete a priori elimination of the BSSE, while taking into account the natural nonorthogonality of the MOs of the two interacting fragments. Compatibility with the usual formulation of the analytic derivatives of the SCF energy is also guaranteed. This allowed the implementation of gradient-optimization algorithms and force constant matrix computations in both the direct and conventional SCF approaches. The SCF-MI method has been incorporated into the GAMESS-US package. Tests have been performed at the Department of Chemistry of the Iowa State University. Increases in the complication and computation time are minimal if compared to standard SCF codes and the method shows much less basis-set dependence in the predicted molecular properties.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 151-158, 1998
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  • 148
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    International Journal of Quantum Chemistry 69 (1998), S. 175-182 
    ISSN: 0020-7608
    Keywords: electron propagator ; propagator theory ; photoelectron spectra ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new approximation of the electron propagator includes second-order terms in the superoperator Hamiltonian matrix that are not present in the nondiagonal, renormalized method (NR2) of J. Chem. Phys. 108, 1008 (1998). These terms are not difficult to calculate and resemble expressions obtained with various propagator and coupled-cluster formalisms. Their inclusion produces larger, more accurate vertical ionization energies of F2 and H2O2. Cancellations between the second-order terms considered here and the first-order terms present in the NR2 method reduce the importance of shakeup operators in describing the first few cationic states of these molecules. Dyson orbitals for 2A final states of H2O2 exhibit qualitatively important mixings between canonical orbitals.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 175-182, 1998
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  • 149
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    International Journal of Quantum Chemistry 69 (1998), S. 193-200 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The role of electron pairing in chemical bonding stressed by the Lewis electron-pair model of the chemical bond is analyzed and discussed from the point of view of the proposal that chemical bonds are the regions of space populated roughly by two electrons and which at the same time exhibit low fluctuation of an electron pair. Based on this assumption, we have been able to introduce a new localization procedure, the output of which are just the orbitals (chemical bonds) satisfying the criterion of minimum pair fluctuation. It has been shown that these orbitals remarkably well display the most important attributes of chemical bonds, namely, the localization in the regions where classical bonds are expected and there is very high transferability from one molecule to another. The applicability of this procedure as a new means of the analysis and the visualization of the molecular structure is also discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 193-200, 1998
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  • 150
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    International Journal of Quantum Chemistry 69 (1998), S. 241-245 
    ISSN: 0020-7608
    Keywords: B3LYP ; DFT ; electron correlation ; biradical ; reduced density matrix ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Examples are given showing that present-day density functional theory (DFT) functionals give useful results for neutral closed-shell molecules of low atomic number. For high Z, high charge, or systems with large configuration mixing, present functionals are less useful.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 241-245, 1998
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  • 151
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    International Journal of Quantum Chemistry 69 (1998), S. 279-291 
    ISSN: 0020-7608
    Keywords: quantum fluid density functional theory ; quantum theory of motion ; time-dependent processes ; electronegativity ; hardness ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A quantum fluid density functional theory has been developed through an amalgamation of the quantum fluid dynamics and the time-dependent density functional theory. It is used in studying typical time-dependent processes like ion-atom collisions and atom-field interaction. Temporal evolution of chemical reactivity parameters as electronegativity, hardness, entropy, and polarizability is monitored for a He atom in its ground and excited states interacting with an external electric field and an incoming proton. It is observed that these reactivity parameters either remain static or oscillate with the external field in the atom-field interaction case, whereas during the collision process, hardness and entropy maximize and polarizability minimizes for both the electronic states of the atom. The possibility of a quantum theory of motion within the purview of this quantum fluid density functional framework is also explored.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 279-291, 1998
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  • 152
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    International Journal of Quantum Chemistry 69 (1998), S. 305-315 
    ISSN: 0020-7608
    Keywords: Floquet theory ; time-dependent density functional theory ; multicolor laser fields ; multiphoton ionization ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We generalize the Floquet formulation of the time-dependent density functional theory (TDDFT) [Telnov and Chu, Chem. Phys. Lett. 264, 466 (1997)] to the case of many-electron systems in multicolor or polychromatic time-dependent fields. It is shown that the time-dependent Kohn-Sham equations can be transformed into an equivalent time-independent infinite-dimensional Floquet Hamiltonian eigenvalue problem. For the case of bound-free transitions, we introduce the notion of complex density and present a non-Hermitian many-mode Floquet formulation of TDDFT. A procedure is presented for the determination of the complex quasi-energies and the calculation of the total and partial ionization rates from individual electron orbitals. The theory is illustrated by a case study of multiphoton ionization of He atoms in the presence of an intense 248 nm laser field and its third harmonic. Novel intensity- and phase-dependent behavior of multiphoton processes in two-color fields is reported.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 305-315, 1998
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  • 153
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    International Journal of Quantum Chemistry 69 (1998), S. 371-386 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure and properties of the carbonyls TiCO, FeCO, and NiCO in the quintuplet, triplet, and singlet ground states and triplet, quintuplet, and triplet first electronic excited states, respectively, were studied using density functional theory (DFT) methods. The ADF program (version 2.1) with the parameterizations BP86, BPW91, and BLYP (for the GGA corrections) and the Slater-type orbital (STO) basis sets IV as well as the GAUSSIAN 94 program with the parameterizations BP86, PW91, BLYP, B3PW91, and B3LYP and the Gaussian basis sets 6-311G(d,p) were used. Similar calculations were done on the carbenes TiCH2, FeCH2, and NiCH2 in the triplet, triplet, and singlet ground electronic states and the quintuplet, quintuplet, and triplet first electronic excited states. Geometry optimization and the calculation of dissociation energies for the M(SINGLE BOND)C bond, vibrational frequencies, electric atomic charges, and dipole moments were performed for these compounds in the above-mentioned states, and comparisons between the results obtained as well as with those reported in the literature were made.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 371-386, 1998
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  • 154
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    International Journal of Quantum Chemistry 69 (1998), S. 405-421 
    ISSN: 0020-7608
    Keywords: density functional theory ; exchange-correlation potentials ; grids ; linear scaling methods ; divide-and-conquer ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conventional linear combination of Gaussian-type orbitals (LCGTO) density functional (DF) method fits the exchange-correlation (XC) potentials and energy density within an auxiliary basis. The benefits of this approach versus straightforward numerical quadrature of the XC terms will be discussed. However, the conventional fitting procedure scales cubically with system size and is therefore ill-suited for applications on very large systems. A divide-and-conquer (DAC) approach to the fits of the XC terms has been developed and implemented within the DeFT DF software package. This DAC procedure will be outlined, and the results and timings of benchmark 6-31G** calculations on extended glycine polypeptides will be presented. Other changes made to DeFT's XC subroutines, necessary to achieve near-linear scaling, will also be discussed. DeFT's grids have also been refined to achieve greater precision, and a scheme using fewer points for fitting procedures and more points for numerical integrations is presented. Through our preliminary efforts, we have achieved scalings in the XC modules no worse than N1.4 (N is the number of atoms) for peptides that range in size up to 83 atoms.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 405-421, 1998
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  • 155
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    International Journal of Quantum Chemistry 69 (1998), S. 497-502 
    ISSN: 0020-7608
    Keywords: density functional theory ; hybrid functionals ; finite temperature theory ; grand canonical ensemble ; statistical mechanics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We generalize hybrid density functional theory to finite temperatures. We find that the internal potential generated by the orbital functionals leads to complications in the statistical mechanics of the reference system and the self-consistent procedure to obtain the density.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 497-502, 1998
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  • 156
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    International Journal of Quantum Chemistry 69 (1998), S. 513-522 
    ISSN: 0020-7608
    Keywords: density functional theory ; correlation energy ; kinetic energy ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Polynomial and Padé representations of the kinetic energy component Tc[ρ] of the correlation energy density functional Ec[ρ] are presented in this article. Two approximate local formulas similar to the Wigner form for Ec[ρ] are investigated for Tc[ρ]. Applications of these formulas along with their two polynomial counterparts are carried out for atoms, ions, and a few simple molecules. Numerical predictions of Tc values are made for these species. Both Hartree-Fock and self-consistent-field densities are used in their evaluations. Recommended at this time is the two-parameter Padé [0, 1] formula Tc[ρ]=∫a0ρ/(1+b0ρ-1/3) dr, with a0=0.1658 and b0=6.102 (atomic units).   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 513-522, 1998
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  • 157
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    International Journal of Quantum Chemistry 69 (1998), S. 541-550 
    ISSN: 0020-7608
    Keywords: density functional theory ; long-range behavior ; electron density ; Kohn-Sham ; orbital energy ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The total energy, internuclear distance, vertical ionization potential, and electron density function were determined for the hydrogen molecule (H2) with a configuration interaction calculation, a Hartree-Fock calculation, all 22 density functional theory (DFT) methods built into Gaussian 92/DFT, and the Davidson and Jones natural orbital expansion of the Kolos and Roothaan wave function. These data were used to explore the performance of DFT methods in modeling the chemical bond. We noted that although the vertical ionization potentials suggested by the highest occupied molecular orbital energies of DFT methods are generally quite poor, the medium-range bahavior of the electron density from DFT methods is close to that of more accurately determined electron densities. Accordingly, we propose a method of finding an approximate vertical ionization potential for a density functional calculation from the medium-range behavior of the electron density. We explain why the density functionals' electron densities decay in a manner different from that which their orbital energies lead us to expect and explore the relationship between the errors in the exchange-correlation potentials, electron densities, and the orbital energies.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 541-550, 1998
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  • 158
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    International Journal of Quantum Chemistry 69 (1998), S. 581-590 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Adding a nonlocal operator to the true Hamiltonian is used to define an adiabatic coupling between a noninteracting (e.g., Kohn-Sham) reference system and the real one. By using the Hellmann-Feynman theorem, it is shown that when the operator added is shifting upward the virtual (noninteracting) levels the correlation energy is related to the number of electrons displaced into the virtual levels. To construct approximations, calculations were performed for the uniform electron gas. The expectation that atomic systems would behave locally like a uniform electron gas with the unoccupied levels shifted up by a constant close to the atomic excitation energies is not confirmed by exploratory calculations on atoms. Some perturbation theory expressions are also given and suggest an approach to self-interaction free-correlation energy functionals.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 581-590, 1998
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  • 159
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    International Journal of Quantum Chemistry 69 (1998), S. 573-580 
    ISSN: 0020-7608
    Keywords: fermion ground state ; density functional ; overcomplete description ; variational principle ; profile relation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Although formally exact expressions can be written for thermodynamic potentials of many-particle systems in external fields, Legendre transformation to particle density as the controlling field has many virtues, insensitivity in the face of singular states being notable. It is also true that nonuniform systems, classical or quantum, which lead to simple closed-form solutions, tend to do so principally in the density functional form. However, as gleaned from the heavily investigated cases of classical lattice gas networks, this may be achieved only if additional auxiliary densities are appended, with respect to which the associated thermodynamic potential is stationary. Here, we successfully apply the overcompleteness strategy to the prototypical case of free fermion ground states in one-dimensional space, extrapolate to three-dimensional space, and apply a basic one-functional variational ansatz. The qualitative properties of the resulting free energy and potential-density profile relations are in accord with those that any valid formulation must satisfy.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 573-580, 1998
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  • 160
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    International Journal of Quantum Chemistry 69 (1998), S. 591-605 
    ISSN: 0020-7608
    Keywords: charge transfer processes ; chemical potential/electronegativity equalization ; chemical reactivity theory ; density functional theory ; equilibria in molecular systems ; Fukui functions ; hardness matrix equalization ; hardness matrix ; pure- and mixed-state descriptions of charge transfer ; reactive system modeling ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The pure- and mixed-state descriptions of the charge transfer (CT) between complementary molecular subsystems are compared at the two- and three-state approximation levels. The CT chemical potential and hardness derivatives of the resulting energy expressions are discussed. The Kohn-Sham approach to the equilibria in such mutually closed, interacting subsystems is presented and specific algorithms for calculating the hardness matrix and Fukui functions (FF) in the reactant resolution are presented. The orbital relaxation accompanying populational displacements on subsystems is examined in a more detail and the in situ FF are expressed in terms of the FF matrix of reactants. The hardness matrix equalization rule is derived.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 591-605, 1998
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  • 161
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    International Journal of Quantum Chemistry 69 (1998), S. 615-618 
    ISSN: 0020-7608
    Keywords: van der Waals interaction ; dispersion forces ; seamless vdW density functional ; density-density susceptibility ; exchange-correlation energy ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The van der Waals (vdW) or dispersion interaction between distant sections of a molecular or condensed matter system contributes part of the correlation energy. This dispersion part is missed, or is given at best unreliably, by the usual local and gradient functionals for the exchange-correlation energy. Here we discuss various quasi-local schemes which are expected to provide good vdW energies using only a knowledge of the ground-state electron density n(r). The general scheme proposed is “seamless,” i.e., it remains valid whether or not the subsystems involved have significant overlap of electronic density. Perturbative expansion of this scheme, followed by a doubly local density approximation, yields a simple vdW scheme proposed independently by Andersson et al. and by Dobson and Dinte, which is also similar to a scheme of Rapcewicz and Ashcroft. These simpler schemes cannot deal with overlap between the electron clouds. Progress is reported on the full seamless scheme which deals with the more challenging case where overlap is present. All of the present schemes yield the classic dipolar “van der Waals” 1/R6 energy when the separation R sufficiently exceeds the individual system dimensions. None is restricted to this case, however.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 615-618, 1998
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  • 162
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    International Journal of Quantum Chemistry 69 (1998), S. 607-613 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We investigated whether an average local ionization energy defined within the framework of Hartree-Fock theory is physically meaningful in Kohn-Sham density functional theory, in view of the uncertainty in relating the latter orbital energies to electronic ionization energies. In a preliminary study of N2O using several different exchange/correlation functional combinations, it was found that the orbital energies in each case correlate roughly with experimental binding energies. Average local ionization energies are computed on the molecular surfaces of 11 monosubstituted benzene derivatives using both Hartree-Fock and density functional procedures. Both sets of results correctly predict the ortho/para- or meta-directing tendencies of the substituents, as well as their ring-activating or -deactivating effects. Excellent correlations were obtained with the Hammett substituent constants. This initial study suggests that Kohn-Sham average local ionization energies should be physically meaningful, on a relative basis.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 607-613, 1998
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  • 163
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    International Journal of Quantum Chemistry 69 (1998), S. 639-648 
    ISSN: 0020-7608
    Keywords: electron correlation ; three-electron integrals ; closed shell ; SCF LCAO MO methods ; correlated wave function ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correlated electronic wave-function theory developed by S. Obara and K. Hirao [Bull. Chem. Soc. Jpn. 66, 3300 (1993)], as applied to two-electron molecular systems, is generalized to many-center many-electron problems. The exact formulas for effective Hamiltonian operators are given. The rules for the calculation of matrix elements with three-electron operators over Slater determinants are formulated. From the energy-minimum principle, the system of master equations is derived for variational coefficients of a trial wave function for the molecules with closed electronic shells.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 639-648, 1998
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  • 164
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    International Journal of Quantum Chemistry 69 (1998), S. 629-637 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We introduce a new molecular theory beyond the Born-Oppenheimer approximation, where both electrons and nuclei are treated quantum mechanically and equivalently. First, we develop the coupled mean-field theory (CMFT) for both the electronic and nuclear fields. Then, to take into account the dynamic correlation between these particles, we develop a new molecular theory using the generator coordinate method (GCM) based upon the CMFT, which enables us to calculate the molecular eigenstate and eigenvalue directly. Finally, we apply this method to a water molecule and analyze the isotope effect on the vibrational frequency and the particle density.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 629-637, 1998
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  • 165
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    International Journal of Quantum Chemistry 69 (1998), S. 649-657 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: INDO/CI calculations were used to analyze the C1s and O1s shake-up spectra of nickel tetracarbonyl, Ni(CO)4. The satellite structure in both cases is dominated by excitations from metal-ligand bonding (2Πb) to metal-ligand antibonding (2Πa) orbitals and by excitations within the core-ionized CO molecule, ΠCO - Π*CO.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 649-657, 1998
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  • 166
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    International Journal of Quantum Chemistry 69 (1998), S. 619-627 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Three popular approximations to density functional theory are used to calculate equilibrium bond lengths, atomization energies, and vibrational frequencies of 10 rare-gas diatomic molecules. We investigated the results for the local density approximation (LDA), the Perdew-Wang 91 generalized-gradient approximation (GGA-PW91), and the Perdew-Burke-Ernzerhof generalized-gradient approximation (GGA-PBE) functionals. Calculated results are well converged with respect to basis set and numerical precision. In addition, we studied the effects due to long-range 1/r6 attractions with the London formula and density functional determined atomic polarizabilities and ionization potentials. These calculations indicate that the interaction from the overlap of atomic densities and the long-range van der Waals attraction are both important for correctly predicting the total binding energy.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 619-627, 1998
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  • 167
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    International Journal of Quantum Chemistry 69 (1998), S. 659-667 
    ISSN: 0020-7608
    Keywords: conjugated hydrocarbon ; internal rotation ; ab initio method ; geometry ; energy barrier ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential-energy curves of internal rotation were calculated for 1,3-butadiene at the MP2/6-311G** level, for isoprene and 1,3-pentadiene at the MP2/6-311G* level, and for 2,3-dimethyl-1,3-butadiene and styrene at the MP2/6-31G* level. The geometries of the energy minima (stable conformers) and maxima (transition states) on the curves are completely optimized. For butadiene and its methyl derivatives, two stable rotamers, s-trans and gauche conformers, are obtained. s-trans forms have the lowest energies and gauche conformers twisted by 39.9°-48.3° around the central bond of the butadiene skeleton are, on average, 9.8 kJ/mol above the trans forms. s-cis forms are rotational transition states. The computed gauche-cis barriers range from 4.30 to 11.70 kJ/mol. The regular effects of methyl substitutions at the end and central carbons are found. For styrene, the planar form is calculated to be a saddle point which is only about 1 kJ/mol higher in total energy than a twisted minimum, in which the torsional angle between the phenyl and vinyl planes is 27.4°.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 659-667, 1998
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  • 168
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    International Journal of Quantum Chemistry 69 (1998), S. 689-689 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 169
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    International Journal of Quantum Chemistry 69 (1998), S. 691-691 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 170
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    International Journal of Quantum Chemistry 69 (1998), S. 669-678 
    ISSN: 0020-7608
    Keywords: ab initio calculations ; metal oxides ; oxygen anions ; methane ; surface reactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The stability of oxygen anions and the hydrogen abstraction from methane on a reduced SnO2 (110) crystal surface have been studied theoretically using a point-charge model. The geometric and electronic structures for the present molecules are calculated by means of a hybrid Hartree-Fock/density functional method at the B3LYP/6-311+G(3df, 3pd) level of theory. The calculations of the energies on the point-charge model are performed using these optimized geometries. It is found that a low concentration of the active oxygen species O- and O2- is expected on the reduced SnO2 surface. The activation energies for the abstraction of hydrogen atom from methane on the reduced SnO2 surface are obtained: 12 kcal/mol for O- species and more than 48 kcal/mol for O2- species, indicating that O- species on the surface is the main active center for the dissociation of a C(SINGLE BOND)H bond of methane, which is in agreement with the other oxide catalysts.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 669-678, 1998
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  • 171
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    International Journal of Quantum Chemistry 69 (1998), S. 679-687 
    ISSN: 0020-7608
    Keywords: aromaticity ; hydrogen clusters ; complete basis set ; Gaussian-2 ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Energies for highly symmetric cyclic hydrogen clusters (Hn) with Dnh symmetry were evaluated with Gaussian-2 (G2) and quadratic complete basis set (CBSQ) ab initio approaches. The energies were compared with linear hydrogen clusters as well as with their energies of formation from hydrogen and charged hydrogens. To better estimate aromaticity and eliminate ring strain energy, energies of formation for hydrogen clusters of the same ring size but with different electron numbers were compared. In this way, it was confirmed that the planar hydrogen clusters in singlet electronic configurations follow the Hückel aromatic rule, while aromaticity of the planar hydrogen clusters in an excited state (triplet) follows the Möbius 4n aromatic rule. It was also determined that hexagonal H6 is actually the transition-state structure for hydrogen exchange. The activation barrier for this exchange was estimated to be around 75 kcal/mol.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 679-687, 1998
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  • 172
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    International Journal of Quantum Chemistry 69 (1998), S. 705-711 
    ISSN: 0020-7608
    Keywords: infrared spectrum ; intensity ; frequency ; molecular mechanics ; quantum chemistry ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Infrared spectra simulations require ab initio techniques to get reliable intensities. On the other hand, recent force fields can provide accurate molecular geometries and frequencies. Therefore, it is suggested that these new force fields could be used to simulate infrared spectra, dipole-moment surfaces being described at high levels of theory in order to get satisfactory intensities. As pointed out, for a system with N atoms, the cost of such a simulation would be reduced N-fold with respect to standard quantum approaches. Preliminary calculations based on this scheme are reported here. Encouraging results are obtained since no significant lost of accuracy is noted on going from the ab initio to the molecular mechanics potential energy surface.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 705-711, 1998
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  • 173
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    International Journal of Quantum Chemistry 69 (1998), S. 693-703 
    ISSN: 0020-7608
    Keywords: BCS ; GL ; Hubbard-Stratonovitch ; Nambu ; superconductivity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is intended to derive the Ginzburg-Landau (GL) equation directly from the Bardeen-Cooper-Schrieffer (BCS) Hamiltonian. By the use of the Hubbard-Stratonovitch transformation, the electron-electron interaction composed of four fermion operators is eliminated to yield an auxiliary boson field. This is an effective field in which electrons behave as if they were free. In applying the path integral method, the electron field is integrated out to remain the Lagrangian for this boson field. The symmetry breaking and the phase transition of the system described by this field are discussed, and it is shown that this boson field turns out to be the GL order parameter.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 693-703, 1998
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  • 174
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    International Journal of Quantum Chemistry 69 (1998), S. 713-719 
    ISSN: 0020-7608
    Keywords: correlation energy ; MBPT ; level shift ; dissociation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The effect of replacing the Hartree-Fock one-particle energies with ionization potentials obtained from inverse Dyson equation when calculating electron correlation energies perturbatively is investigated. Though the energy shifts vary from system to system, the slight decrease of the resulting excitation energies at around equilibrium geometries leads to a slight increase of the correlation energies in most cases. In the dissociation limit the inverse Dyson equation opens the gap, thus nondiverging potential curves emerge even at the restricted Hartree-Fock (RHF)+RS2 level.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 713-719, 1998
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  • 175
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    International Journal of Quantum Chemistry 70 (1998), S. 1-1 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 176
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    International Journal of Quantum Chemistry 69 (1998), S. 727-752 
    ISSN: 0020-7608
    Keywords: π electron systems ; quantum statistics ; electronic counting rules ; quantum Monte Carlo simulations ; model Hamiltonians ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic properties of π systems are studied under special consideration of the quantum statistical constraints experienced by a fermionic ensemble. In a many-electron basis of atomic occupation numbers these constraints decompose into a formal on-site constraint and a formal intersite constraint. The on-site constraint can be equated with the Pauli exclusion principle (PEP) while the intersite constraint can be equated with the Pauli antisymmetry principle (PAP). Under special molecular topologies the intersite constraints of fermion ensembles are suppressed. In this case the conventional fermionic statistics coincides with a mixed quantum statistics with fermionic on-site and bosonic intersite properties. Such a mixed statistics is realized in the π subspace of polyenes, (4n+2) Hückel annulenes (n=0, 1, 2,…) and the odd spin space of (2n+1) annulenes (n=1, 2, 3,…) if the π electron hoppings are restricted to nearest-neighbor centers. We discuss the topological conditions to conserve this statistical peculiarity at least approximately in two-dimensional (2D) π topologies. The quantities “aromaticity” and “antiaromaticity,” widely used in the chemical literature, are traced back to quantum statistical, topological, and molecular size considerations. The competition between the quantum constraints PEP and PAP, on the one hand, and the strength of the two-electron interaction in a given π Hamiltonian, on the other, is analyzed on the basis of Pariser-Parr-Pople (PPP), Hubbard (Hu), and simple Hückel molecular orbital (HMO) calculations. The influence of the PAP is reduced with increasing correlation strength while the influence of the PEP does not depend on this coupling parameter. The numerical results have been derived by Green's function quantum Monte Carlo (GF QMC) simulations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 727-752, 1998
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  • 177
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    International Journal of Quantum Chemistry 69 (1998), S. 721-726 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It has been known since the work of March and White that the simplest nonrelativistic density functional theory, namely, the statistical method of Thomas, Fermi, and Dirac, sums subseries of the so-called 1/Z expansion to yield, for heavy neutral atoms, the ground-state energy E= - a0Z7/3+ a1Z2-a2Z5/3+⋅⋅⋅. The term of O(Z5/3) is the Dirac-Slater exchange energy Eexc, and it is of considerable interest to know at what order the correlation energy Ecorr enters this expansion. Dimensional scaling considerations by Kais et al. suggested Ecorr∝Z4/3 in the limit of large Z. Here, attention is focused on whether this can be distinguished empirically from a term of the form (aZ ln Z+bZ) for neutral atoms. If the latter term is correct, then a relationship between Ecorr and the Shannon information entropy can be forged analytically for large atomic number Z in nonrelativistic theory.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 721-726 (1998)
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  • 178
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    International Journal of Quantum Chemistry 69 (1998), S. 753-759 
    ISSN: 0020-7608
    Keywords: HIV-1 protease ; irreversible inhibition ; ab initio ; DFT ; solvent reaction field ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Reaction coordinate for the irreversible inhibition of the HIV-1 protease by epoxy alkylating agent has been examined by ab initio HF/6-31G(d) calculations, semiempirical molecular orbital (MO) calculations, while the effect of polar macromolecular environment was included on the solvent reaction field level. The calculations, show that inhibition is specific: activation (free) energy is low when two carboxylic groups that are models for Asp-25 and Asp-125 in the HIV-1 protease active center are involved and is considerably higher when only one formate or CH3S- is present. The latter two mimick any single carboxylate side chain and cysteine side chain, respectively. Inclusion of solvent reaction field slightly changes the activation free energy. The calculations confirm experimental data concerning the necessity of two-aspartate motif of the protease active center to activate the alkylating agent [Yu et al., J. Am. Chem. Soc. 118, 5856 (1996)]. The results are discussed in the context of design of nonirreversible inhibitors.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 753-759, 1998
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  • 179
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    International Journal of Quantum Chemistry 70 (1998), S. 3-40 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 180
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    International Journal of Quantum Chemistry 70 (1998), S. 41-63 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The two alternative treatments of the BSSE problem of intermolecular interactions - the a posteriori counterpoise (CP) correction scheme of Boys and Bernardi (BB) and the a priori exclusion of the basic-set superposition error (BSSE) by using the “chemical Hamiltonian approach” (CHA) - are discussed. Alternative interpretations of the BB scheme are compared and some problems and paradoxes are described which can consistently be resolved by introducing a hierarchical scheme of N-body CP corrections. In CHA, one identifies those terms of the Hamiltonian (or Fockian) which cause the BSSE - the same terms cause the energy lowering in the “ghost orbitals” calculations; by omitting these terms from the Hamiltonian (Fockian), one can calculate BSSE-free wave functions, by use of which the BSSE-free values of the energy and of other physical quantities can be obtained in a conventional manner. CHA was successfully applied at the SCF and DFT levels of theory, including systems containing three or more interacting subsystems or even infinite periodic chains. The pivot full CI calculations performed for small model systems showed the applicability of the approach for treating electron correlation as well. Most recently, a CHA version of the MP2 theory and a second-order BSSE-free intermolecular PT have also been tested; they are also applicable for complexes of larger size. It was observed, at any level of theory, that the results given by the a posteriori BB and a priori CHA schemes converge to each other much faster than BSSE disappears from the uncorrected results.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 41-63, 1998
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  • 181
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    International Journal of Quantum Chemistry 70 (1998), S. 65-75 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Unitary-group-based perturbation theory for both low and high spin open-shell systems is employed to obtain perturbative corrections for the contribution of the connected triexcited clusters as well as of pseudo-doubles (three-body doubles), within the framework of the unitary-group-based coupled-cluster method with interacting singles and doubles [UGA-CCSD(is)]. A set of triple excitation operators, generating orthonormal triply excited configurations, which can be employed in both noniterative and iterative coupled-cluster calculations involving connected triexcited clusters, is constructed and various schemes for perturbative triple corrections are introduced.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 65-75, 1998
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  • 182
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    International Journal of Quantum Chemistry 70 (1998), S. 89-93 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this work, a general method of calculating multicenter integrals over Slater-type functions is presented and numerical calculations on diatomic molecules, H2 and N2, are carried out. Our results are then compared with those obtained with Gaussian-type functions. The method, which is essentially an addition theorem for Slater-type functions, is outlined and some of its mathematical and numerical properties are presented. As regards our numerical results, although such very small diatomics are of limited interest in chemistry, they are to be considered as the necessary step that will allow us to tune up the computational machinery. Furthermore, the conclusions drawn throughout this work will be used for more general algorithms which will allow us to treat efficiently more complicated systems, namely, three, four, and many more atomic systems.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 89-93, 1998
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  • 183
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    International Journal of Quantum Chemistry 70 (1998), S. 77-87 
    ISSN: 0020-7608
    Keywords: linear molecular aggregate ; coupled Liouville equation ; hyperpolarizability ; optical retarded field ; optical bistability ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We develop a numerical calculation scheme of a dynamics of the quantum network for linear molecular aggregates under time-dependent electric fields. Each molecule is assumed to be an electric dipole arranged linearly with an arbitrary angle from the longitudinal axis. This approximation is considered to be appropriate for the aggregates with large intermolecular distances and allows us to treat intermediate- and large-size aggregates without enormous direct calculations of the Coulomb interactions. The molecular interactions are taken into account by adding the radiations from these dipoles to the external electric fields. The dynamics is performed by solving the coupled Liouville equation constructed from the Liouville equation for each dipole. The effects of the retarded electric fields are evaluated with numerically exact precision by using the sixth-order Runge-Kutta scheme. As a simple example, we examine the linear aggregates involving two dipoles composed of two-state molecules under the continuous laser fields. The effects of the intensity of external fields, the intermolecular distances, and the angles between the dipole and the longitudinal axis on the population differences are investigated. The linear polarizability spectra are calculated by using the definition of nonperturbative polarizability. An abrupt change like the phase-transition behavior in the variation in the population differences for the applied field intensities is observed for the dimer models. Based on these results, we anticipate the population differences for larger (intermediate)-size aggregates.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 77-87, 1998
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  • 184
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    International Journal of Quantum Chemistry 70 (1998), S. 95-103 
    ISSN: 0020-7608
    Keywords: transition-state optimization ; free energy surface ; intrinsic reaction coordinate ; solution chemical reaction ergodography ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To obtain a transition state (TS) in solution chemical reaction, a new TS optimization method has been proposed on a multidimensional free energy surface (FES). Analogous to the method for the Born-Oppenheimer potential energy surface using ab initio molecular orbital calculation, the present method utilizes force and Hessian on the FES, which can be calculated by molecular dynamics method and the free energy perturbation theory. Furthermore, on the basis of the method, we have proposed the definition of the intrinsic reaction coordinate (IRC) on the FES. According to not only the estimation of the computational demand but also the comparison of the numerical accuracy, we conclude that our method should be more efficient than such other methods that utilize only the free energy. Finally, it is discussed that the TS optimization and the IRC on the FES should become very important tools to develop a new research field called the solution chemical reaction ergodography.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 95-103, 1998
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  • 185
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    International Journal of Quantum Chemistry 70 (1998), S. 105-112 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present work, a theoretical analysis was carried out on the effect of the proximity of a polar bond to a polarizable bond on the magnetic shielding constants of the nuclei belonging to the polarizable bond. In particular, the case of 13C magnetic shielding constants in a vinylic C=C bond is considered. The electric field of the polar bond is simulated by two opposite point charges proximate to the C=C bond in (I) C2H4 and (II) (OH)HC2H2. Changes in the 13C magnetic shieldings as well as the polarization of the π C=C bond are evaluated as a function of the magnitudes of such point charges. The shielding effect on the C nucleus proximate to the positive charge is of the same order of magnitude as that experimentally determined in aryl methyl ethers. The present analysis yields theoretical support to the assumption that changes in magnetic shielding constants can be adequate probes to detect the stabilization effect in a molecular system originating in an electrostatic interaction between a polar bond proximate to a polarizable bond.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 105-112, 1998
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  • 186
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    International Journal of Quantum Chemistry 70 (1998), S. 113-123 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Calculations of topological properties of the Laplacian of the electronic density function [-∇2ρ(r)] evaluated with a parametrical (CNDO) and full-electron ab initio HF methods were performed. Results for CH4, CH3Cl, CCl4, H2S, and PH3 molecules show that the use of the symmetrical transformation to the basis set is adequate to build the CNDO electronic density functions that reproduce, in a qualitative way, the topology of -∇2ρ(r) obtained from full-electron ab initio calculations. The topology of -∇2ρspin(r) was evaluated using CNDO calculations. An analysis of the critical points was carried out on modeled catalysts (Ni5 and Mo3S14H4 clusters) to study the adsorption of C on Ni5 and dissociation of H2 on Mo3S14H4. The location of critical points was associated with the most reactive sites on the cluster surface and used to predict the C adsorption path and the most convenient orientation of H2 for dissociation.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 113-123, 1998
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  • 187
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    International Journal of Quantum Chemistry 70 (1998), S. 125-131 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In highly extended (mesoscopic) molecular networks or solid-state systems, one-electron states with an extremely complex (multifractal) internal structure commonly appear at intermediate length scales. It is shown that multifractality is not compatible with the concept of electron density. Physical intuition suggests that electron densities should be smooth both at atomic distances and close to the macroscopic limit. Special care must be taken, however, in studying density-based energy functionals at intermediate length scales due to the nonexistence of the density itself. In this contribution, the extension and practical calculation of some energy functionals for multifractal structures are discussed and statistical (scaling) properties are studied as well.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 125-131, 1998
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  • 188
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    International Journal of Quantum Chemistry 70 (1998), S. 159-165 
    ISSN: 0020-7608
    Keywords: object-oriented programming ; Java ; World Wide Web ; quantum chemistry software ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Java programming language is an architecture-independent, object-oriented language, designed for secure local and network applications. Programs written in Java can either be embedded within hypertext documents on the World Wide Web (so-called applets), or be fully stand-alone, as software written in other programming languages. In this article, we present two sample quantum chemistry applications written in Java. The first is an educational applet, illustrating an LCAO-SCF calculation of the ground state of the helium atom using a double-zeta basis set. The second is a prototype one- and two-electron integral package for Gaussian-type atomic orbitals. The potential for Java applications to play an educational role and for the construction of object-oriented libraries of basic functionality for quantum chemical software is discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 159-165, 1998
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  • 189
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    International Journal of Quantum Chemistry 70 (1998), S. 147-157 
    ISSN: 0020-7608
    Keywords: dynamic correlation effects ; perturbation theory ; MBPT ; multireference perturbation theory ; scaling theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present an analytical estimate of the intrinsic errors of second-order perturbation theory in the complete basis set limit in the framework a scaling theory, which employs the maximal “sharpness” of the orbitals in a given basis set, quantified by the average momentum, as its fundamental variable. We find that the intrinsic errors of second-order perturbation theory fall with the third inverse power of the maximal momentum representable in the basis set, while the basis set truncation errors fall with the second inverse power of the momentum. These analytical arguments are verified in a numerical investigation employing distributed basis sets of up to 600 orbitals for the helium atom, water, and ethene. Extending our analysis to generic multireference perturbation theory (MRPT) we find that the leading contribution for the relaxation of the orthogonal complement of the zero-order wave function in the primary space scales with the same power as the leading overall perturbative correction, which yields an analytical argument for the perturbation inclusion of such feedback effects in the formulation of efficient versions of MRPT.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 147-157, 1998
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  • 190
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    Keywords: molecular dynamics ; formamidine ; proton transfer ; heat capacity ; energy transfer ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To explore the energy flow-mechanism of a solution-chemical reaction on the basis of an energy-fluctuation analysis and the time evolution of various kinds of energies [J. Phys. Chem. 48, 12506 (1994)], a chemical reaction molecular dynamics simulation was carried out in the microcanonical ensemble for the proton-transfer reaction of formamidine in an aqueous solution. The energy ΔE required to surmount the reaction barrier was found to be supplied mainly from the potential energy of the solvent water rather than from the solvent kinetic energy. The ratio of the reactive energy flow from the solvent potential vs. the kinetic energy, ΔV/ΔK, was 2.34 and was found to be in good agreement with the value of 1.96 predicted from the classical constant-volume heat capacity of water, CVB, via the Lebowitz-Percus-Verlet relation [Phys. Rev. 153, 250 (1967)]. This finding confirmed the results of Wilson et al. [J. Am. Chem. Soc. 113, 74 (1991)]; namely, that the ratio should be determined only by the heat capacity of the solvent with no relation to the kinds of solute molecules, and in aqueous solution, the coordinate fluctuation plays a more important role in the reaction occurrence than in the momentum fluctuation. Furthermore, on the assumption that the solute internal distribution is assumed to accomplish instantaneously thermal equilibrium with the surrounding solvent and to be characterized as an instantaneous canonical ensemble, the instantaneous partial molar constant-volume heat capacity of solutes, CVS(t), is defined at first by a simple extension of the relationship between the equilibrium heat capacity CVS and the ratio of the kinetic- and potential-energy fluctuations of the solutes. On the average, CVS(t) has a larger value than that evaluated within the harmonic approximation in the gas phase, i.e., 199.5 J K-1mol-1. The incompatibility was brought about by the intervention of the solute-solvent interaction. In addition, an exceptionally large value of CVS(t) was observed just 0.06 ps after (or before) the barrier crossing time and can be explained by the smaller fluctuation in the instantaneous kinetic energy. It was also observed that, during the relaxing (or surmounting) process of the reaction, CVS(t) becomes relatively larger than those in the transition and equilibrium periods, originating from the simple fact that the relatively larger potential fluctuation makes it easier to dissipate (or supply) the reactive energy from (or to) the reactants, as translated by a larger CVS(t).   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 133-145, 1998
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  • 191
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    International Journal of Quantum Chemistry 70 (1998), S. 167-180 
    ISSN: 0020-7608
    Keywords: localized orbitals ; periodic structures ; perturbation theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Localized molecular Hartree-Fock orbitals have been determined by means of an iterative procedure consisting of orthogonalization and configuration interaction employing single excitations. For ring systems the rotational symmetry has been included explicitly to obtain Wannier-like orbitals suited for a posteriori correlation calculations using only the most important contributions within a limited region around one reference ring segment. Applications involving different estimates of the correlation energy include as model systems (H2)2n+1, the ionic LinHn, and a weakly bound beryllium ring as well as the strongly covalent molecule (CH2)36 forming a closed ring. In all cases, the localized and canonical MP2 results are close, and the localized Epstein-Nesbet second-order gives a good estimate of more expensive MP4 or CEPA-0 values.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 167-180, 1998
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  • 192
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    International Journal of Quantum Chemistry 70 (1998), S. 189-197 
    ISSN: 0020-7608
    Keywords: atomic Hartree-Fock ; augmented Fourier basis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a scheme for Hartree-Fock and related calculations on atoms using a Fourier basis augmented by an exponential function. All multiple sums in the variational energy expression are written as single sums over combinations of multiplications and convolutions. The computational cost of the method is thus practically linear in the number of basis functions. The results compare favorably with the most precise published results of numerical grid methods and variational calculations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 189-197, 1998
    Additional Material: 2 Ill.
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  • 193
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    International Journal of Quantum Chemistry 70 (1998), S. 181-188 
    ISSN: 0020-7608
    Keywords: nuclear attraction integral ; nonlinear D transformations ; rapid evaluation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Density functional theory requires precise numerical values for three-center nuclear attraction integrals, best obtained over Slater-type orbitals (STOs). Efficient evaluation of three-center nuclear attraction integrals over STOs to predetermined accuracy is made possible by applying the nonlinear D and D transformations. These methods are implemented in Fortran subroutines. This work shows how the conditions of applicability for these transformations are readily proven to be satisfied using the Axiom symbolic computation system. Axiom also provides exact values of the integrals for comparison. Their evaluation by standard numerical quadrature methods (Gauss-Laguerre), proves inadequate: Certain parameters lead to inaccurate values for the integrals, whereas the transformed integrals are highly accurate and rapidly evaluated.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 181-188, 1998
    Additional Material: 6 Tab.
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  • 194
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    International Journal of Quantum Chemistry 70 (1998), S. 199-203 
    ISSN: 0020-7608
    Keywords: alignment ; intense fields, dressed molecular states ; Floquet theory ; hydrogen molecule ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential energy surface resulting from the application of the high-frequency Floquet theory to the hydrogen molecule coupled to a linearly polarized field is determined. The method uses a standard quantum chemistry program. It is found that the anisotropy of the surface is more pronounced than in the case of the hydrogen molecular cation. This is indicative of a strong propensity for an alignment of the internuclear axis in the direction of the applied field.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 199-203, 1998
    Additional Material: 2 Ill.
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  • 195
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    International Journal of Quantum Chemistry 70 (1998), S. 205-217 
    ISSN: 0020-7608
    Keywords: potential energy surface ; transition structure ; nonrigid molecule ; symmetry group ; reaction path ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The symmetry group of a nonrigid molecule is related to that of the transition structure that is related to the rearrangement process which contributes to the “nonrigidity” of the molecular system. The resulting permutation/rotation/reflection groups for nonrigid molecules can be much larger in order than the usual Longuet-Higgins permutation/inversion group. A few examples are presented to illustrate the definition of the symmetry group for nonrigid molecules.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 205-217, 1998
    Additional Material: 6 Ill.
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  • 196
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    International Journal of Quantum Chemistry 70 (1998), S. 219-239 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We review some recent developments of high-order response theory and illustrate the utility of this theory for a selection of nonlinear properties.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 219-239, 1998
    Additional Material: 7 Ill.
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  • 197
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    International Journal of Quantum Chemistry 70 (1998), S. 241-252 
    ISSN: 0020-7608
    Keywords: hydrogen bonding ; liquid structure ; amide compounds ; low-wave-number vibrational spectra ; intensities ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Relationship between intermolecular hydrogen bonding and features in the low-wave-number infrared (IR) and Raman spectra of liquid formamide (FA), N-methylformamide (NMF), and N-methylacetamide (NMA) is studied by performing ab initio molecular orbital calculations on clusters of these molecules. Strongly Raman-active modes are calculated at ∼200 and ∼100 cm-1 for the FA hexamer consisting of two antiparallel linear trimers, but only at ∼100 cm-1 for the NMF linear tetramer and the NMA linear trimer. These calculated results are consistent with spectral features observed in the liquid state. The IR spectra calculated for these cluster species are also in agreement with experimental results. By contrast, no strongly Raman-active mode is calculated for the FA linear hexamer in the 250-150 cm-1 region. The strong Raman band of liquid FA observed at ∼200 cm-1 is therefore characteristic of two-dimensional hydrogen bonding. The origin of the spectral features is examined by calculating the IR and Raman intensities arising from translations, rotations, and methyl torsion(s) of each molecule. It is clarified that the Raman intensities in the low-wave-number region mainly originate from rotational motions in the out-of-plane direction and is explained by anisotropy of the polarizability tensor of each molecule. The IR intensities in the low-wave-number region mainly arise from rotations of the permanent dipole moment of each molecule, but other factors also have some contributions.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 241-252, 1998
    Additional Material: 7 Ill.
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  • 198
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    International Journal of Quantum Chemistry 70 (1998), S. 269-282 
    ISSN: 0020-7608
    Keywords: hyperpolarizability ; hydrogen chain ; bond alternation ; ab initio ; electron correlation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations of the second hyperpolarizabilities (γ) for one-dimensional hydrogen chains (Hn) with different bond-length alternations and charges are performed. We investigate their signs, magnitudes, and chain-length dependences at various electron correlation levels using an extended basis set. Remarkable differences in the γ are observed for different bond-length alternations and for different charged states. In order to elucidate the differences in γ, spatial contributions of electrons to the γ are analyzed for these short and long Hn chains by using the second hyperpolarizability density plots. The effects of the introduction of charged defects into the linear chains on the γ are also investigated by varying the intercharged defects distance.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 269-282, 1998
    Additional Material: 13 Ill.
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  • 199
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    International Journal of Quantum Chemistry 70 (1998), S. 253-267 
    ISSN: 0020-7608
    Keywords: DFT ; carbonyloxyl radicals ; CASPT2 ; chemical reactions ; isomerizations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The structure of the lowest electronic states of HCOO· in C2v and Cs symmetries were optimized employing density functional theory (DFT) methods with extended basis sets including up to f- (on C and O) and d- (on H) polarization functions. Generalized gradient functionals (BLYP) and adiabatically connected functionals (B3LYP and B3PW91) were employed for studying HCOO·, as well as the isomer HOCO· (trans), the dissociation limit H·+CO2, and the transition state for the decomposition. At the best DFT levels employed, the ground state of HCOO· is 2A1 (in C2v) with equal C—O bond lengths, while the low-lying 2B2 state is only about 4 kJ/mol above (without inclusion of zero-point energies). The broken-symmetry 2A′ state (with unequal C—O bond lengths, i.e., Cs symmetry) is predicted to be about 13 kJ/mol above the 2A1 state and to be a transition state for the isomerization HCOO· (2A1)→HOCO· (2A′), with the trans-HOCO· isomer about 55 kJ/mol more stable. These facts agree closely with the most recent CASPT2/ANO calculations on this system. Therefore, it is concluded that some DFT models can be used safely for the study of larger radicals of the same type (despite several drawbacks discussed at length in this study). B3PW91, using several basis sets, is subsequently applied to the study of the possible reaction mechanisms of acetyloxyl radical, which exhibits a much more complicated path than formyloxyl, due to the presence of the methyl group. The optimum structures of isomers with coplanar or perpendicular CH and CO bonds were obtained for CH3COO· and two saddle points identified on the path of decomposition into CH3· and CO2. On the other side, saddle points for isomerization into CH3OCO· and CH2COOH· were also located, and the decomposition of the former to CH3O·+CO investigated. Finally, the structure of the benzoyloxyl radical (C6H5COO·) and its possible decomposition products were investigated along the same lines.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 253-267, 1998
    Additional Material: 3 Ill.
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  • 200
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    International Journal of Quantum Chemistry 70 (1998), S. 283-290 
    ISSN: 0020-7608
    Keywords: LiB ; spectroscopic constants ; excited states ; VBSCF ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The common correspondence between molecular orbital theory and resonance theory in the description of the electronic structure of a molecule is used to select valence bond (VB) structures constructing wave functions of the low-lying states of LiB and LiB+. The spectroscopic parameters of the low-lying states of LiB and LiB are determined by using the valence bond self-consistent field (VBSCF) method. For comparison, multconfiguration SCF (MCSCF) calculations for LiB are also carried out. If the overlap-enhanced orbitals are employed, a compact VB wave function can correctly describe bond making and bond breaking in the entire dissociation process for the low-lying electronic states of LiB. All calculations locate the ground state as 3Π. The VB calculation with 14 VB structures at the level of the basis set DH(s, p) predicts an excellent dissociation energy of 1.16 eV and vibrational frequency of 527 cm-1 for the ground state, which is in good agreement with previous high-level calculations with a large basis set. The effect of the basis set on the numerical quality of the VBSCF calculation is investigated. It is important for improving accuracy of the VB calculation to enlarge the basis set, although the VB treatment including more VB structures with a relatively small basis set needed in the nonorthogonal VB calculation can reasonably describe dissociation behavior for systems with few electrons. The chemical bonds in the ground state 3Π and the excited state (1)3Σ- have ionicities of 63.4 and 65.1%, respectively, while chemical bond in the first excited state 1Σ+ is mainly covalent. Other several low-lying states are also investigated by the VB and MCSCF methods.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 283-290, 1998
    Additional Material: 1 Ill.
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