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  • 1990-1994  (613)
  • 1985-1989
  • 1993  (613)
  • Computational Chemistry and Molecular Modeling  (478)
  • crystal structure  (135)
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Years
  • 1990-1994  (613)
  • 1985-1989
Year
  • 1
    ISSN: 1572-8862
    Keywords: Vanadium ; phenylhydrazine ; nitrogenase ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstract Addition of phenylhydrazine to a mixture of VCl3 · THF/N,N-propyl-bis (salicyladimine) and sodium hydride yielded a trinuclear vanadium complex, V3(μ3-O)(μ-Cl)Cl6(μ-η1-η1PhNHNH2)2(PhNHN H2)2(THF), containing two bridging and two terminal phenylhydrazine ligands. The product has been crystallographically characterized (P21/n, a=12.949(2) Å,b=24.061(4) Å,c=22.504(4) Å, β=107.22(1) deg.,V=6697(2) Å3 withZ=4) and was found to contain the first example of bridging monosubstituted hydrazine (phenylhydrazine) ligands.
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Molecular engineering 3 (1993), S. 43-59 
    ISSN: 1572-8951
    Keywords: Heteropolymolybdates ; heteropolytungstates ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The chemistry of polynuclear oxometalate anions is dominated by molybdenum and tungsten in their highest oxidation state. During the past twenty years this class of compounds has attracted much attention because of their variable applications, e.g. as reagents in analytical procedures, as industrial catalysts and as potential anticancer drugs. In order to obtain model systems for the investigation of the catalytic activity of heteropolyanions we have synthesized and structurally characterized some organo derivatives of polyoxoanions. We secondly focus on Sb(III) and Bi(III) heteropolytungstates to examine the important influence of the unshared electron pair on the resulting structures and properties. Some of these compounds may be regarded as supramolecular aggregates showing inclusion phenomena. In 9 two [SbW9O33]9− anions are linked by a set of six sodium ions forming a nearly planar hexagon. The sodium ions are enveloped by an oxygen cage formed by terminal oxygen atoms of the polyanions and by water molecules. Furthermore, the four anions [Sb2W22O74(OH)2]12−, [Sb2W20Fe2O70(H2O)6]8−, [Sb2W20Co2O70(H2O)6]10− and [Bi2W20Fe2O68(OH)2(H2O)6]6− (in10, 11, 12, 13) may be regarded as transition metal complexes of novel [Sb2W20O70]14− or [Bi2W20O70]14− anions which are serving as ligands. The octahedral coordination sphere of each transition metal is formed by three oxygen atoms of the anion and completed by three water molecules. The Sb(III) heteropolyanion, [Na2Sb8W36O132(H2O)4]22− in (14) includes two sodium and four antimony ions besides four water molecules. Each anion consists of four β-B-SbW9-Keggin fragments linked together by four SbO4-groups, incorporating two sodium and four water molecules effecting an additional connection of the subunits.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Colloid & polymer science 271 (1993), S. 50-55 
    ISSN: 1435-1536
    Keywords: Polytetrafluoroethylene ; copolymer ; crystal structure ; chain folding
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract Molecular-mechanics calculations are performed on model folds proposed in the literature for single crystals of polytetrafluoroethylene crystallized in the phase stable below 19°C, in order to evaluate how they are modified when a fluorine atom is substituted by a bulky group, as occurs in fluorinated copolymers of tetrafluoroethylene. Only intramolecular effects are taken into account (isolated-chain model). An exhaustive analysis has been carried out of tetrafluoroethylene-hexafluoropropylene copolymer. Moreover, the lower energy folds found for such a copolymer have been examined for copolymers with chlorotrifluoroethylene and perfluoroalkylvinylethers, as comonomers. Our calculations show that all the considered comonomers can be arranged in the model folds proposed for the homopolymer, according to the imposed geometric constraints.
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  • 4
    ISSN: 1572-9001
    Keywords: Atomic displacement ; molecular motion ; vibrational analysis ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Atomic displacement parameters determined from a single-crystal X-ray-diffraction study on K2Ru(SO4)2 * 6H2O are analyzed in the molecular mean field approximation. The motion of SO2 2− can be described with a rigid-body model, whereas for [Ru(H2O)6]2+ internal stretching motion and coupling between stretching motion and overall translation are found to be necessary for explaining the observed atomic displacement parameters. Frequencies and force constants of internal motion are not significantly affected by such couplings. K2Ru(SO4)2 * 6H2O crystallizes in the monoclinic space groupP21/c (No. 14), witha = 6.1211(7)Å,b = 12.226(2) Å,c = 8.916(2)Å,β = 105.11(1)°,Z = 2 at 160 K anda = 6.1402(7)Å,b = 12.274(2)Å,c = 8.957(1)Å,β = 105.25(1)°,Z = 2 at 295 K. The structure was refined to a finalR(F) of 0.017 at 160 K and of 0.019 at 295 K for 1438 and 1299 observed reflections withF 0 〉 6σ(F0) and sin θ/λ 〉 0.617 Å1−.
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  • 5
    ISSN: 1572-8862
    Keywords: Platinum ; ruthenium ; crystal structure ; heteronuclear cluster
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstract From the reaction of Ru(CO)5 and Pt(COD)2, COD = 1, 5-cyclooctadiene, the new platinum-ruthenium heteronuclear cluster complex Pt2Ru4(CO)18,1, was obtained in 60% yield.1 has a folded ladder-like structure with alternating pairs of ruthenium atoms and platinum atoms. The cluster of1 can be split to yield the known compound PtRu2(CO)8(η2-dppe),2, (54% yield) by reaction with 1, 2-bis(diphenylphosphino)ethane, dppe, at 25°C. When1 was treated with excess dppe at 40°C, thebis-diphos compound3, PtRu2(CO)6(μ-η2-dppe)2 was obtained (39% yield). Under the similar reaction conditions,2 was converted to3 in 44% yield. All these complexes were characterized by single crystal X-ray diffraction analyses. Compounds2 and3 both contain a triangular cluster of one platinum and two ruthenium atoms, but in2 the bidentate ligand, dppe, chelates the platinum atom and in3 the two dppe ligands bridge the two Pt-Ru metal-metal bonds. Crystal data for1: space group C2/c,a=12.542(2)Å,b=15.350(4)Å,c=15.252(3)Å, β=105.32(2)°,Z=4, 2192 reflections,R=0.025. For2: space group P21/c,a=14.351(2)Å,b=13.486(3)Å,c=19.218(3)Å, β=108.48(1)°,Z=4, 3029 reflections,R=0.027. For3: space group P21/c,a=18.836(6)Å,b=15.559(5)Å,c=23.259(7)Å, β=111.26(2)°,Z=4, 4204 reflections,R=0.038.
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  • 6
    ISSN: 1572-8862
    Keywords: Tungsten ; chloride ; hexatungsten ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstract The hexanuclear tungsten cluster complex [W6(μ3-Cl)8Cl6]2−,1 was isolated as a salt of the cation (MeO2CCH2)2N(H)CH2CH2N(CH2CO2Me)2+, EDTEH+, by crystallization from methanol solvent of the product obtained from the reaction of (H3O)2[W6(μ3-Cl)8Cl3] with the disodium salt of ethylenediaminetetraacetic acid. The compound was charcterized by single-crystal X-ray diffraction analysis. The cluster anion contains an octahedral arrangement of six tungsten atoms with chloride ligands bridging the eight triangular faces of the cluster and one chloride ligand terminally coordinated to each of the six tungsten atoms. The cation (EDTEH)+ achieves its positive charge by protonation of one of the nitrogen atoms. Crystal data: space group = P21/a,a=10.689(2) Å,b=22.931(6) Å,c=12.093(3) Å, β=98.41(2)°,Z=2, 2476 reflections,R=0.028.
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Journal of polymers and the environment 1 (1993), S. 65-80 
    ISSN: 1572-8900
    Keywords: Biodegradable plastic ; microbial degradation ; bacterial poly(d-(−)-3-hydroxybutyrate) ; crystal structure ; physiological behavior
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract As one of a series of studies concerning the relationship between the higher-order structure and the biodegradability of a biodegradable plastic, the effects of the crystal structure of the plastic on microbial degradation were investigated. Bacterial poly(d-(−)-3-hydroxybutyrate) (PHB) films which had a wide range of crystallinity were prepared by the melt-quenching method. Results of the microbial degradation indicated that the development of crystallinity evidently depressed the microbial degradability. From scanning electron microscopy (SEM) observations, it is suggested that the microbial degradation proceeded in at least two manners. One was preferential degradation of the amorphous region leaving the crystalline lamellae intact, which was considered to be a homogeneous enzymatic degradation over the surface. The other was nonpreferential spherical degradation on the surface. The SEMs indicate that the spherical holes were the result of colonization by degrading bacteria. The holes varied in size and number with the change of crystal structure. Therefore, it is considered that the crystal structure of PHB also influenced the physiological behavior of the degrading bacteria on the PHB surface.
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  • 8
    ISSN: 1572-9001
    Keywords: Cobaltocene ; molecular geometry ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The molecular and crystal structures of the monoclinic modification of cobaltocene Cp2Co (P21/n, Z=2) was determined at 100 K and 297 K with new sets of X-ray diffraction data (MoKα radiation, 3995 and 6534 reflections, refinement toR = 0.026 and 0.030 using 1061 and 1299 independent observable reflections, respectively). At 297 K the structure is disordered (similar to the isomorphous ferrocene and nickelocene) with two distinct orientations of the ring, differing in occupancy factors (80% and 20%) and by a rotation angle in the ring plane of approximately 34°. Just as for nickelocene but in contrast to ferrocene, no sharp phase transition was found on cooling Cp2Co to 100 K, but an essential ordering of the Cp-ring position was detected with a decrease of the contribution of the second minor orientation to nearly 10%. On the basis of a careful analysis of the molecular geometry, crystal packing, and anisotropic atomic displacement parameters, a dynamic temperature-dependent nature of the disorder in Cp2Co is assumed.
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  • 9
    ISSN: 1572-8862
    Keywords: Molybdenum ; acetate, carboxylate ; hexamolybdenum ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstract The hexamolybdenum cluster complex [Mo6(μ3-Cl)8(O2CMe)6]2−, 1 was isolated as the Bu4N+ salt in 71% yield from the reaction of (Bu4N)2[Mo6(μ3-Cl)8Cl6] with AgO2CMe in CH2Cl2 solvent. The compound was characterized by single crystal X-ray diffraction analysis. The cluster contains an octahedral arrangement of six molybdenum atoms with eight chloride ligands bridging the eight trianglar faces and six carboxylate ligands terminally coordinated through one oxygen atom to each of the six molybdenum atoms. Crystal data: space group =P21/n,a=10.713(3)Å,b=14.43(1)Å,c=21.919(4)Å, β=94.37(2)°,Z=2, 1965 reflections,R=0.036.
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  • 10
    ISSN: 1573-1111
    Keywords: 12-membered crown ethers ; crystal structure ; conformation peculiarities ; X-ray analysis ; CH...O contacts
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structures of two 12-membered crown ethers, benzo-12-crown-4 (1) and naphtho-12-crown-4 (2), have been determined by X-ray analysis. Both structures are molecular. Compound1 is monoclonic,P21/b,a=8.466(3),b=8.019(3),c=33.590(10) Å, γ=90.99(3)o. The unit cell contains two crystallographically independent molecules of1 with similar conformations. Compound2 is also monoclinic,P21/a,a=24.148(8),b=14.535(4),c=7.987(5) Å, γ=102.87(2)o. Two independent molecules in the unit cell have significantly different conformations.
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  • 11
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 15 (1993), S. 159-165 
    ISSN: 1573-1111
    Keywords: Dibenzo-30-crown-10 ; crystal structure ; complexation ; dysprosium isothiocyanate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Crystalline [Dy(NCS)3(dibenzo-30-crown-10)(H2O)2]·H2O·MeCN can be obtained by slowly evaporating a reaction mixture of Dy(NCS)3·nH2O with dibenzo-30-crown-10 in a solution of acetonitrile. The material crystallizes in the monoclinic space groupP21/n, the cell parameters area=11.450(5),b=23.284(4),c=18.424(6)Å, β=106.28(4)°,V=4715Å3,M=968.47,D x=1.36 g cm−1, μ=17.80 cm−1,F(000)=1972,Z=4.2740 independently observed [I≥3σI] reflections were used in the final least-squares refinement leading to an agreement index ofR=0.085. The Dy(III) ion coordination geometry approximates a square antiprism, involving two water oxygens and three dibenzo-30-crown-10 oxygen atoms and three isthiocyanate nitrogens. Hydrogen bonds are formed between the two water molecules and four uncoordinated crown ether oxygen atoms.
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  • 12
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 15 (1993), S. 341-349 
    ISSN: 1573-1111
    Keywords: Molecular asymmetry ; calixarene ; acetone ; clathrate ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal and molecular structure of the 1:1 clathrate of the asymmetric calix[4]arene,1, and acetone has been determined by X-ray analysis. The crystal data are: tetragonal, space groupP4/n,a=b=12.574(6),c=12.572(6) Å,V=1988(2) Å3,Z=2,D x =1.111 g cm−3,D m =1.108 g cm−3. Least-squares refinement based on 1131 observed reflections withF 0〉3σ(F 0) and anisotropic temperature factors led toR=0.096. In spite of the molecular asymmetric calixarene1 the crystal structure has high symmetry, because a part of the host and guest molecules are in disordered states.
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  • 13
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 15 (1993), S. 385-398 
    ISSN: 1573-1111
    Keywords: Hydrogen bonding ; alicyclic diol ; helical tubulate ; crystal structure ; ferrocene ; squalene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The inclusion compounds of 2,8-dimethyltricyclo[5.3.1.13,9]dodecane-syn-2,syn-8-diol,3, with ferrocene and with squalene have been prepared. The crystal structures of these helical tubulate compounds: (3)3·(ferrocene)0.75 [P3121,a=b=13.7480(6),c=7.0312(5) Å,Z=1,R=0.038] and (3)3·(squalene)0.23 [P3121,a=b=13.677(1),c=7.0533(9) Å,Z=1,R=0.042] are described.
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  • 14
    ISSN: 1573-1111
    Keywords: Werner clathrate ; nickel octahedral complex ; tetrahydrofuran ; crystal structure ; NMR ; molecular recognition ; hydrocarbon
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract This paper addresses the general question: what are the significant guest properties selected by this host when interacting with guest molecules in the liquid phase, resulting in cocrystallization of the host and guest? In particular, to what extent do π electrons in a guest molecule effect its potential as a guest? Werner clathrates of the host [Ni(NCS)2(4-ViPy)4] with mixtures of tetrahydrofuran (THF) and cyclic hydrocarbons as guests have been synthesised and their structures elucidated. Clathrate (1): [Ni(NCS)2(4-ViPy)4](1.78 THF)(0.22 cyclohexane), crystallizes in the orthorhombic space groupP bcn a=9.976(6),b=20.630(25),c=19.861 (4) Å,V=4087Å3,Z=4,R=0.087 for 1461 reflections; (2): [Ni(NCS)2(4-ViPy)4](1.76 THF)(0.24 cyclohexene),P bcn ,a=9.987(7),b=20.614(4),c=19.898(4)Å,V=4096Å3,Z=4,R=0.084 for 1304 reflections; (3): [Ni(NCS)2(4-ViPy)4](0.48 THF)(0.52 1,3-cyclohexadiene), tetragonalI41/a,a=16.898(3),b=16.898(3),c=26.463(6)Å,V=7556Å3,Z=8,R=0.120 for 1698 reflections; (4): [Ni(NCS)2(4-ViPy)4](0.36 THF)(1.04 1,4-cyclohexadiene),I41/a,a=16.986(4),b=16.986(4),c=25.896(15)Å,V=7472Å3,Z=8,R=0.103 for 2025 reflections; (5): [Ni(NCS)2(4-ViPy)4](0.35 THF)(1.05 benzene),I41/a,a=17.102(10),b=17.102(10),c=25.498(8)Å,V=7458Å3,Z=8,R=0.118 for 2200 reflections; (6): [Ni(NCS)2(4-ViPy)4](3 benzene), triclinicP1,a=10.432(24),b=11.155(9),c=21.581(7)Å, α=78.70(5), β=82.60(7), γ=74.09(13)°,V=2361Å3,Z=2,R=0.078 for 3427 reflections. Host-guest ratios and, for mixtures of guests, guest1/guest2 ratios, were elucidated by density and NMR. We show that the conformational freedom of the substituted pyridines is not the primary reason for the clathrating ability of Werner hosts. All six structures show no host-guest interaction at the level of van der Waals interactions. As non-bonding interactions are not observed between the host and guest, this study shows that the above host's selectivity by enclathration of particular guest molecules cannot be accounted for by solid state structural analysis.
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  • 15
    ISSN: 1573-1111
    Keywords: Iminophosphoranes ; amine inclusion compounds ; 13C CPMAS NMR spectroscopy ; salt-like crystalline aggregates ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal and molecular structure is reported for the inclusion compound 2-[o-(triphenylphosphoranylidenamino)benzyliden]amino-1H-2,3-dihydroindazol-3-one/isopropylamine/water3b. The crystal structure consists of discrete dimeric salt-like aggregates joined together by strong N+−H...−O−C hydrogen bonds between pairs of centrosymmetrically-related indazolonate anions and isopropylammonium cations. Six other inclusion compounds have been prepared and characterized by NMR [with propylamine (3a), withtert-butylamine (3c), withsec-butylamine (3d), withtert-pentylamine (3e), with 1-methylbutylamine (3f) and withiso-pentylamine (3g)]. Two different arrangements are found, both with the host being in the anionic form. The guests are either: (i) one protonated amine and one water molecule (3b and3f); or (ii) one protonated amine and the corresponding neutral amine (3a, 3c, 3d, 3e and3g).
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  • 16
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 16 (1993), S. 267-272 
    ISSN: 1573-1111
    Keywords: Crown ether ; ytterbium nitrate ; phen ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The title complex was prepared by reacting Yb(NO3)3 (12-crown-4) with 1,10-phenanthroline (hereafter phen) in acetone. It crystallized in the triclinic space group $$P\bar 1$$ witha=10.095(5),b=17.415(4),c=8.710(2) Å α=92.45(2), β=115.83(3), γ=74.08(3)0 andD c=1.85 g cm−3;Z=2. The metal ion in this complex is nine-coordinated to three bidentate nitrate ions, two nitrogen atoms of a phen and a water molecule. The crown ligand is hydrogen bonded to the coordination water molecule. The symmetry change of the crown ether is also discussed.
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  • 17
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Proteins: Structure, Function, and Genetics 16 (1993), S. 205-213 
    ISSN: 0887-3585
    Keywords: calcium binding ; crystal structure ; protein stability ; site-directed mutagenesis ; subtilisin ; X-ray crystallography ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: A version of subtilisin BPN′ lacking the high affinity calcium site (site A) has been produced through genetic engineering methods, and its crystal structure refined at 1.8 Å resolution. This protein and the corresponding version containing the calcium A site are describedand compared. The deletion of residues 75-83 was made in the context of four site-specific replacements previously shown to stabilize subtilisin. The helix that in wild type is interrupted by the calcium binding loop, is continuous in the deletion mutant, with normal geometry. A few residues adjacent to the loop, principally those that were involved in calcium coordination, are repositioned and/or destabilized by the deletion. Because refolding is greatly facilitated by the absence of the Caloop, this proteinoffers a new vehicle for analysis and dissection of the folding reaction. This is among the largest internal changes to a protein to be described at atomic resolution. © Wiley-Liss, Inc.
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  • 18
    ISSN: 0887-3585
    Keywords: thrombin ; bifunctional inhibitor ; crystal structure ; hirutonis ; drugdesing ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: The crystal structure of the complexes of hirutonin-2 and hirutonin-6 with human α-thrombin have been solved and refined to R-factors of 0.169 (2.0 Å resolution) and 0.162 (201Å), respectively. Hirutonins belong to a family of bifunctional inhibitors bearing a noncleavable moiety mimicking the scissile bond. Hirutonin-2 is an analog of (D)Phe-Pro-Arg-Gly-hirudin49-65; hirutonin-6 has the same N-terminal tripeptide connected to a shortened fibrinogen exosite-binding part by a short, non-peptidyl linker. The hirutonin-6 molecule is well defined in the electron density with the exception of the C-terminal Leu-h61. The linker follows near the bottom of the canyon connecting the active site with the exosite, forms a short antiparallel β-sheet-like arrangement with Leu-40-Leu41 and makes van der Waals contacts with Glu39-Leu40-Leu41 of thrombin. In the thrombin-hirutonin-2 complex, the N- and C-terminal parts of the inhibitor are well or dered (except the C-terminal Gln-h65) while the central portion of the linker is partially disordered. The glycine analog in the P1′ position of hirutonin-2 assumes a conformation similar to that of the canonical form (Bode and Huber (1992) Eur. J. Biochem. 204 : 433-451) and supports the identification of the S1′ site as restricted by His57, Trp60D, Lys60F, and the Cys42-Cys58 disulfide bridge. The carbonyl oxygen of the P1 arginine residue is located in the oxyanion hole formed by the NH groups of Gly193 and Ser195, while the carbonyl carbon is positioned within a short distance, 2.8 Å, from the Oγ of Ser195. This resembles the conformation of the substrate-like inhibitors bound to other serine proteases. The N-terminal (D)Phe-pro-Arg fragment common to both inhibitors binds to thrombin in a fashion very similar to that of other inhibitors having this motif. The binding of the C-terminus of hirutonins to the fibrinogen-binding exosite is similar to that observed in hirudin and hirulog complexes. © 1993 Wiley-Liss, Inc.
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  • 19
    ISSN: 1573-9171
    Keywords: titanasilanes ; titanasilazanes ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract An X-ray structural study of two titanium-containing organosilicon compounds, (Me3Si)3SiTi(NEt2)3 (1) and ClTi[N(SiMe3)2]3 (2), has been performed. The conformation of molecule1 in a crystal is staggered (approximate inherentC 3 symmetry), the Ti-Si and Ti-N bond lengths are 2.671(2) and 1.874–1.890(5) Å, respectively. A crystal of1 consists of one type of enantiomers (the space group is P41212; the absolute configuration has been determined). The structure of2 studied previously has been refined to the value of R=0.029 on the basis of 3442 reflections (the absolute structure has been determined), the Ti-Cl and Ti-N bond lengths are 2.260(1) and 1.926(1) Å, respectively. The strong distortions in the symmetry of the valence environment of the N atoms in the molecules of1, 2, and related structures are caused by electronic effects, in which the conformation of the relevant molecular fragments plays a determining role.
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  • 20
    ISSN: 1573-9171
    Keywords: synthesis ; crystal structure ; azepinethiones ; trimethylsilyl derivative
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The title compounds were prepared and X-ray analysis was performed (R = 0.064 and 0.035 for 1309 and 1637 reflections, respectively). In the former the intramolecular S→Si coordination interactions are absent and the Si atom has undistorted tetrahedral coordination with an S...Si distance of 4.034 Å. Crystals of the latter are built of centrosymmetric dimeric H-complexes (S...H(N) 2.58 Å, the S...HN angle 168°).
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  • 21
    ISSN: 1573-9171
    Keywords: peroxosolvates ; potassium fluoride ; monoperoxosolvate ; thermal stability ; crystal structure ; hydrogen bond
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Potassium fluoride peroxosolvate KF-H2O2 was obtained upon action of a 30% aqueous solution of hydrogen peroxide on solid potassium fluoride dihydrate. As compared to other peroxosolvates, KF-H2O2 is characterized by the highest thermal stability: the decomposition rate constantk 1, at 120°C is 1.4 10−3 min−1, the enthalpy of H2O2 addition to KF is 8.1 kcal/ mol. The correlation between the high stability of KF-H2O2 and the absence of catalytic properties of KF towards H2O2, and the formation of strong intermolecular O-H...F and intramolecular O-H...O hydrogen bonds in the crystal is discussed.
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  • 22
    ISSN: 1573-9171
    Keywords: synthesis ; crystal structure ; pentacoordinated silicon ; chelate cycle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The X-ray diffraction structural study of the (N-Si)-chelate of 2-(chlorodimethyl-silylmethylthio)-1-pyrroline was carried out (R = 0.033 for 1894 reflections). The Si atom has a somewhat distorted trigonal bipyramidal coordination with the Cl and N atoms in axial positions. The Si-Cl and Si-N distances (2.423(1) and 1.945(1) Å) belong, respectively, to the longest and shortest known Si-Cl and Si-N distances in pentacoordinated silicon derivatives with an axial N-Si-Cl moiety.
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  • 23
    ISSN: 1573-9171
    Keywords: iron(II) and ruthenium(II) complexes ; synthesis ; carbonyl, cyclopentadienyl, benzoate ligands ; crystal structure ; X-ray diffraction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Complexes of Fe(II) and Ru(II) of the general formula Cp(OC)2MOC(O)C6H4X-p, where M=Fe, X=H, F (1, 2) or M=Ru, X=H, F (3, 4) have been prepared by reactingp-XC6H4COOAg with [CpFe(CO)2]2 or CpRu(CO)2I. The crystal structures of complexes1–3 have been determined using X-ray diffraction. Compounds1 and3 are isomorphous. The COO group in1–3 is coordinated as a monodentate ligand. As the latter and the CO ligands are electronically non-equivalent, the coordination of the Cp ligand to the metal is slightly asymmetric.
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  • 24
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    Russian chemical bulletin 42 (1993), S. 1149-1151 
    ISSN: 1573-9171
    Keywords: Pt(dddt)2 ; organic conductors ; 5,6-dihydro-1,4-dithiin-2,3-dithiolate((dddt)2−) ; sulfur-containing platinum complexes ; crystal structure ; synthesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A neutral metal complex, [Pt(dddt)2]° (1), has been obtained by oxidation of the [Pt(dddt)2]− anion with excess (Bu4N)AuBr4 in nitrobenzene. Crystallographic data for 1∶a=17.854(9) Å,b=18.409(9) Å,c=4.717(5) Å, γ=68.83(2)°, space group P21/n,Z=4,d calc=2.55 g/cm3. In1 two independent centrosymmetric [Pt(dddt)2]° molecules are packed in stacks that form layers parallel to the (110) plane. The molecules of1 in the layers have shortened S...S contacts 3.491(9) Å, and 3.594(10) Å. The average bond lengths Pt-S 2.242(7) Å, S-C 1.71(2) Å and C=C 1.40(3) Å, together with the square-planar coordination of Pt in PtS4, suggest considerable conjugation in the metal cycles.
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  • 25
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    Russian chemical bulletin 42 (1993), S. 1415-1417 
    ISSN: 1573-9171
    Keywords: vanadatrane ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract An X-ray diffraction study of a substituted vanadatrane-1-one (space groupPna21,R= 0.019 for 1394 reflections, the absolute structure was determined) showed that the geometry of its atrane framework is similar to that of the Si- and Ge-analogs. The bond lengths are: V=O, 1.614(2) Å; V←N, 2.329(2) Å; V-O, 1.800–1.806(2) Å. The deviation of the V atom having distorted trigonal bipyramidal coordination from the equatorial plane of the O atoms is 0.35 Å, the 0=V←N bond angle is 179.4(1)°.
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  • 26
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    International Journal of Quantum Chemistry 48 (1993) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 27
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    International Journal of Quantum Chemistry 47 (1993), S. 469-483 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Rayleigh-Schrödinger-type perturbation theory is developed for the nonlinear Schrödinger equation, which contains a linear perturbation operator. Typical applications involve the self-consistent reaction-field model of solvent effects. Consideration of external perturbations, like electric fields, allows. Calculation of the response properties of solvated species. The general formulae allow development of a consistent Møller-Plesset perturbation theory of solvated molecules. © 1993 John Wiley & Sons, Inc.
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  • 28
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    International Journal of Quantum Chemistry 48 (1993), S. 1-14 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The small and subtle effects of electron correlation in the Rydberg-like 31D and 33D states of the helium-like ions are studied using very accurate explicitly correlated wave functions. In particular, the effects of electron correlation on one-electron densities, probability distributions for the interelectronic distance, and their moments are examined with the help of density and Coulomb holes. Statistical electron correlation is examined with radial and angular correlation coefficients. The different methods of analysis provide complementary insight. © 1993 John Wiley & Sons, Inc.
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  • 29
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    International Journal of Quantum Chemistry 45 (1993), S. 123-132 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The barriers to internal rotation about the N—C bond of formamide and the formamide-H2O complex have been examined by ab initio quantum chemistry methods. Both self-consistent field and correlated approaches have been utilized to determine the geometries, energies, and local harmonic vibrational frequencies of the minimum-energy and transition-state structures of these two systems. We find that formamide's rotation barrier of 14-15 kcal/mol is increased to 16-18 kcal/mol when a single H2O molecule is attached. This result contrasts with the effect of a single H2O solvent molecule on the barrier to tautomerization of formamide (to form formamidic acid HN—CHOH) for which a barrier lowering of ca. 20 kcal/mol has been observed. The rotation barriers obtained for formamide and for its H2O complex are compared with barriers obtained experimentally in various solvents. © 1993 John Wiley & Sons, Inc.
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  • 30
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    International Journal of Quantum Chemistry 45 (1993), S. 167-176 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new formulation of the eigenvector equations for certain polymeric molecules is given. The electronic bands for the infinite molecules are deduced. For the finite molecules, the use of ghost molecules allows an exact specialization of the infinite to the finite eigenvector equations. The complete solution of the equations depends on the solution of a simple transcendental equation. Approximate solutions of this equation are given that bracket the accurate solutions so that, for molecules with many repeated moieties, the approximations become good. The general theory is illustrated by applications to the chrysene series and to the polyphenyls. © 1993 John Wiley & Sons, Inc.
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  • 31
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    International Journal of Quantum Chemistry 45 (1993), S. 177-187 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Point symmetry is a discrete concept; A nuclear configuration for a given stoichiometry either has or has not a particular point symmetry. By contrast, both static and dynamic properties of actual molecules exhibit continuous features. Using the formalism of fuzzy-set theory, we had previously proposed the concept of syntopy as a continuous extension of the symmetry concept for quasi-symmetric systems: This was based on an energetic criterion taking into account the energy costs of nuclear rearrangements. This extension of symmetry was necessarily dependent on the considered electronic state: For a given geometric arrangement of the nuclei, the energy cost of some rearrangement is dependent on the actual potential surface, that is, on the electronic state, in the Born-Oppenheimer approximation. In the extension of the syntopy model reported in the present work, we consider a syntopy criterion that is common to all electronic states. The syntopy thus defined - called the fundamental syntopy of the reduced nuclear configuration space - is independent of the potential surface and of the electronic state: It is defined only in terms of a geometric condition, which makes it more appropriate to rationalize mesoscopic structures. This new syntopy model provides a connection between all possible syntopies generated by the various potential-energy surfaces supported by the considered family of atomic nuclei. © 1993 John Wiley & Sons, Inc.
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  • 32
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    International Journal of Quantum Chemistry 45 (1993), S. 209-224 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nonrelativistic potential V = α/r + β cos θ/(r sin θ)2 + γ/(r sin θ)2, which constitutes an extension of the Kepler-Coulomb potential and of the Hartmann potential, is investigated from both a classical and a quantum mechanical viewpoint. The corresponding Schrödinger equation is solved in parabolic coordinates by using the Kustaanheimo-Stiefel transformation. The accidental degeneracy for the discrete spectrum is explained through the introduction of an su(2) dynamical invariance algebra. The Hamilton-Jacobi equation is solved in parabolic coordinates. The planarity and the periodicity of the trajectories are investigated. All finite trajectories are found to be quasi-periodic (rather than periodic as in the case of the Kepler-Coulomb system). © 1993 John Wiley & Sons, Inc.
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  • 33
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    International Journal of Quantum Chemistry 45 (1993), S. 59-70 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This is the first application of a rigorous, established multiple time-step method to ab initio molecular dynamics. The resulting algorithm is conceptually simple and easy to implement, but very effective. It translates the large mass differences present in ab initio molecular dynamics into substantial savings in computer time while retaining high accuracy. This transforms ab initio molecular dynamics from a desirable but prohibitively expensive possibility into a viable method, at least for short-time phenomena in small systems or for otherwise inaccessibly complicated potential energy surfaces. © 1993 John Wiley & Sons, Inc.
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  • 34
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    International Journal of Quantum Chemistry 45 (1993), S. 87-95 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Hylleraas-CI calculations with linked correlation terms of the form rpijrqkl are discussed. Formulas for the integration of the angular part are deduced and a method for the reduction of the radial part to auxiliary integrals is given. In the case of the Li atom, it is shown that for the calculation of the ground-state energy an ansatz for the wave function with at most two factors rpijrqkl is sufficient to achieve spectroscopic accuracy. © 1993 John Wiley & Sons, Inc.
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  • 35
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    International Journal of Quantum Chemistry 48 (1993), S. 257-265 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Recurrence relations are derived for the evaluation of two-electron repulsion integrals (ERIs) over Hermite and spherical Gaussian functions. Through such relations, a generic ERI or ERI derivative may be reduced to “basic” integrals, i.e., true and auxiliary integrals involving only zero angular momentum functions. Extensive use is made of differential operators, in particular, of the spherical tensor gradient Ylm(∇). Spherical Gaussians, being nonseparable in the x, y, and z coordinates, were not included in previous formulations. The advantages of using spherical Gaussians instead of Cartesian or Hermite Gaussians are briefly discussed. © 1993 John Wiley & Sons, Inc.
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  • 36
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    International Journal of Quantum Chemistry 45 (1993), S. 189-207 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The atomic statement of the principle of stationary action determines the theorems that establish the mechanics of an atom in a molecule. The atomic torque, power, and current theorems are derived. They, along with the atomic force, virial, and continuity theorems, provide a complete description of the behavior of matter at the atomic level, including the effects of electric and magnetic fields. The atomic power theorem, for example, enables one to determine the atomic or molecular source of the creation and dissipation of power in combustion or in an explosion. An atom in a molecule is an open system and an atomic equation of motion for an observable contains a component corresponding to the flux in its current density through the atomic surface. The differential form of each theorem yields an equation of motion for the corresponding property density in which the same surface flux appears as a divergence of the current density. The differential and integrated atomic theorems complement those for the total system, enabling one to relate the property to its atomic components and ultimately to a local contribution from each element in real space. © 1993 John Wiley & Sons, Inc.
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  • 37
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    International Journal of Quantum Chemistry 45 (1993) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 38
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    International Journal of Quantum Chemistry 45 (1993), S. 235-250 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In 1940, Kramers derived an expression for the rate constant of chemical reactions in viscous media. In this theory, chemical reactions are modeled as Brownian processes in the presence of potential barriers. The derivation of the rate constant is based on the solution of the Smoluchowski equation, a Fokker-Planck-type equation in position space. Kramers' theory has been confirmed for reactions in systems ranging from nuclear processes to biochemical problems. The reaction rate can be obtained from the diffusion currents appearing in the Smoluchowski equation. A Smoluchowski-type equation in position space, similar to the one applied by Kramers, has been used to find a nonlinear Schrödinger equation (NLSE) for dissipative, frictionally damped systems, taking into account wave-particle duality. For several potentials, the NLSE can be solved exactly, and analytic expressions for the currents, appearing in the Smoluchowski equation and necessary to determine the rate constants, can be obtained. These currents are not only stationary, but can also be time-dependent. It will be shown that, essentially, the determination of the time-dependence of the currents can be reduced to the solution of Newton-type equations of motion. © 1993 John Wiley & Sons, Inc.
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  • 39
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    International Journal of Quantum Chemistry 46 (1993), S. 145-157 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present work, we present results of all-electron ab initio CASSCF calculations of nine electronic states of the molecule YN. Also reported are the spectroscopic constants derived on the basis of the calculated potential energies. The predicted electronic ground state is 1∑+, and this state is found to be separated from the excited states 3∑+, 3Π, and 1Π by 5177, 9290, and 9915 cm-1, respectively. The chemical bond in the YN molecule is polar with charge transfer from Y to N, giving rise to a dipole moment of 8.19 Debye at 3.3 au in the 1∑+ ground state is basically a double bond composed of two π bonds. The dissociation energy of the YN molecule has been derived as 4.59 eV. © 1993 John Wiley & Sons, Inc.
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  • 40
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    International Journal of Quantum Chemistry 45 (1993) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    Topics: Chemistry and Pharmacology
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  • 41
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    International Journal of Quantum Chemistry 45 (1993), S. 333-347 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nonlocal weighted density approximation (WDA) to the exchange and kinetic energy functionals of many-electron systems proposed several years ago by Alonso and Girifalco in the context of density functional theory is used to compute, within the framework of the spherical jellium model, the ground-state electronic density, chemical potential, and total energy of neutral and negatively and positively charged sodium clusters containing up to N = 800 atoms. From these calculations, we study the behavior of the total energies per atom, chemical potentials, ionization potentials, I(N), and electron affinities, A(N). These results are compared with analogous calculations using the well-known Thomas-Fermi-Weizsäcker-Dirac (TFWD) approximation for the kinetic (TFW) and exchange (D) energy functionals. Calculations including the local density approximation (LDA) to the correlation energy in both WDA and TFWD functionals are also presented. © 1993 John Wiley & Sons, Inc.
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  • 42
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    International Journal of Quantum Chemistry 45 (1993), S. 363-383 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We derived the necessary conditions to which the vector coupling coefficients (VCC) amn and bmn, describing atomic L, S-multiplets of pMdN and dNs1 configurations (1 ≤ N ≤ 9, 1 ≤ M ≤ 5), should satisfy. It is shown that for two-open-shell systems under consideration the unknown VCC should satisfy not only usual restrictions resulting from the spheric symmetry, but also some additional equation introduced in the present paper in the form of a postulate. VCC obtained were used for the ab initio calculations (by the general SCF coupling operator method) of several transitionmetal atoms and ions with electronic configurations 3d14p1, 3p43d3, and 3p53d3. To check the presented theory, we carried out a detailed comparison between these results and analogous data, obtained by the atomic Roothaan-Hartree-Fock method [2]. © 1993 John Wiley & Sons, Inc.
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  • 43
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    International Journal of Quantum Chemistry 45 (1993), S. 385-390 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Schrödinger equation for an atom or molecule is expressed in terms of hyperspherical coordinates. The eigenfunction is expanded in a series of orthonormal complete sets: Yλ,μ(Ω), eigenfunctions of generalized angular momentum scalar operator, and Lvn, generalized Laguerre polynomials. The recurrence relation of the expansion coefficients are derived and the eigenvalues can be obtained from the secular equation. © 1993 John Wiley & Sons, Inc.
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  • 44
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    International Journal of Quantum Chemistry 45 (1993), S. 391-400 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An improved unrestricted Hartree-Fock (UHF) crystal orbital method for infinite one-dimensional systems having antiferromagnetic spin array is presented. This variational version of the UHF method is composed of two steps of self-consistent-field (SCF) calculations. The second SCF equation is to be solved using the canonical transformation between specific crystal orbitals around the Fermi level of the first conventional SCF solution. The energy gain and the forbidden band gap (correlation gap) associated with the hypothetical antiferromagnetic state of trans-polyacetylene are examined as an example. © 1993 John Wiley & Sons, Inc.
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  • 45
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    International Journal of Quantum Chemistry 45 (1993), S. 401-401 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 46
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have calculated certain dynamic polarizabilities (for both real and imaginary frequencies) for H, He, and H2 and the dispersion-energy coefficients for long-range interactions between them. We have done so in a sum-over-states formalism with explicitly electron-correlated wave functions to describe the states. To be precise, we have determined the dipole (α1), quadrupole (α2), and octupole (α3) polarizabilities of H and He for real frequencies (ω) in a range between zero and the first electronic-transition frequency and for imaginary frequencies (iω) on a 32-point Gauss-Legendre grid running from zero to ħω = 20 Eh, and for H2, we have found the dipole (α), quadrupole (C), and dipole-octupole (E) polarizability tensors for the same real and imaginary frequencies. The dispersion-energy coefficients, obtained by combining the sum-over-states for-malism for the polarizabilities with analytic integration over ω, gave values of C6, C8, and C10 for the atom-atom systems; C06, C26, C08, C28, and C48 for the atom-diatom systems; and C6, C′6 and C″6 for the H2—H2 system. Nearly all the results are considered to be more reliable than those hitherto published and some have been obtained for the first time, e.g., C(iω), E(ω), and E(iω) for H2 and C08, C48, and C48 for the H—H2 system. © 1993 John Wiley & Sons, Inc.
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  • 47
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    International Journal of Quantum Chemistry 45 (1993), S. 403-403 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    Topics: Chemistry and Pharmacology
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  • 48
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 49
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    International Journal of Quantum Chemistry 45 (1993), S. 445-470 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper, the efficient evaluation of the atomic integrals I =∫r1ar2br3cr23λr13μr12νe-αr1-βr2-γr3dτ with one or two factors rij-2 is described. These integrals are necessary for a lower-bound calculation for Li-like systems using the method of variance minimization or Temple's formula. © 1993 John Wiley & Sons, Inc.
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  • 50
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    International Journal of Quantum Chemistry 45 (1993), S. 409-431 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Coupled-cluster equations for the calculation of the nonexpanded (fully damped) dispersion energy are derived. These equations are solved in the ring approximation using the Møller-Plesset expansion in terms of the fluctuation potentials WA and WB for the individual molecules. Numerical results of high-order perturbative calculations for the He, H2, LiH, H2O, and HF dimers are presented and compared with the converged results computed using the same basis sets. It is found that the convergence of the Møller-Plesset expansion of the dispersion energy in the ring approximation is very fast. The padé approximants still accelerate this already good convergence. For all complexes studied in this paper, the sum of the corrections through the second-order in WA + WB reproduces over 99% of the converged value. The sum of third- and higher-order corrections in the ring approximation is found to be one or two orders of magnitude smaller than the sum of second-order terms not included in the ring approximation and, therefore, may be safely neglected. Thus, it appears that a second-order calculation, which does not require iterating coupled-cluster equations or solving random phase approximation equations, offers the best compromise between accuracy and computational requirements. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 45 (1993), S. 471-484 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The integrity bases for representations of the nuclear permutation groups Sn (n = 3,4) in the space of internal coordinates describing AXn molecules are determined. This allows optimal expressions of the molecular potential energy functions in terms of internal coordinates that are totally symmetric with respect to permutations of indistinguishable nuclei. © 1993 John Wiley & Sons, Inc.
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  • 52
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    International Journal of Quantum Chemistry 45 (1993) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 53
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    International Journal of Quantum Chemistry 45 (1993), S. 491-505 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 54
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    International Journal of Quantum Chemistry 45 (1993), S. 489-490 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 55
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The carbon dioxide (CO2) to methylamine (CH3NH2) addition reaction is investigated using an ab initio MO method with the aim of obtaining an insight into the relation between transition-state structure and reactivity. The complete potential energy hypersurface was explored and the stationary points representing reactants, transition state, and product were localized. To establish the relevance of different basis sets, calculations were carried out at different levels of theory: STO-3G, 3-21G, 4-21G, 4-31G, 6-31G, 6-311G, 6-31G*, and MP2/6-31G*//HF/6-31G*. A reaction analysis done by correlation of bond-order indices using the More O'Ferrall-Jencks diagram reveals the reaction mechanism as an asynchronous process. The transition state can be described as a four-membered ring. The lone nitrogen electron pair of the amine appears as the driving force of the reaction, where a positive hydrogen rather than a radical is more likely to be transferred. © 1993 John Wiley & Sons, Inc.
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  • 56
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    International Journal of Quantum Chemistry 45 (1993), S. 507-510 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 57
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    International Journal of Quantum Chemistry 45 (1993), S. 545-562 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A number of established nonlinear convergence acceleration methods are presented. It is discussed how these methods, and also some new algorithms, can be applied successfully to Fourier series. Some of the new accelerators are tailored for these-series. Others are also useful for other types of series and sequences, and not only for convergence acceleration, but also for extrapolation or summation problems. Applications to the numerical inversion of the Laplace transform and to a Fourier series arising in the Matsubara formalism are presented. © 1993 John Wiley & Sons, Inc.
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  • 58
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    International Journal of Quantum Chemistry 45 (1993), S. 511-544 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We shall start with very small systems like H2 and H3, computed with very accurate methods (Hylleraas-CI) or atomic systems up to Zn with accurate methods (CI), then move to more complex ones, like C60, but now with somewhat less accurate methods, specifically Hartree-Fock with density functionals, the latter for the correlation energy but not for the exchange energy. For even more complex tasks like geometry optimization of C60, we have resorted to even simpler and parametrized methods, like local density functionals. Then, we could use quantum mechanics either to provide interaction potentials for classical molecular dynamics or to directly solve dynamical systems, in a quantum molecular dynamics approximation. Having demonstrated that we can use the computational output from small systems as input to larger ones, we discuss in detail a new model for liquid water, which is borne out entirely from ab initio methods and nicely links spectroscopic, thermodynamics, and other physicochemical data. Concerning time scales, we use classical molecular dynamics to determine friction coefficients, and with these we perform stochastic dynamic simulations. The use of simulation results from smaller systems to provide inputs for larger system simulations is the “global simulation” approach, which, today, with the easily available computers, is becoming more and more feasible. Projections on simulations in the 1996-1998 period are discussed, new computational areas are outlined, and a N4 complexity algorithm is compared to density functional approaches. © 1993 John Wiley & Sons, Inc.
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  • 59
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    International Journal of Quantum Chemistry 45 (1993), S. 563-572 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A p-version finite element method has been used to calculate second-order pair and total correlation energies for closed-shell Mg and Ar. Comparison with the best results found in the literature suggests that the present values are the most accurate and that the method should perform comparatively better for heavier elements. © 1993 John Wiley & Sons, Inc.
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  • 60
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    Topics: Chemistry and Pharmacology
    Notes: Some topics in relativistic quantum chemistry are reviewed with special emphasis on 4-currents and 4-potentials. It is shown that, both in molecular quantum theory and in solid-state physics, calculations can include relativistic and magnetic effects by means of 4-currents without an excessive increase in complication, provided that 4-component Dirac spinors are used rather than the Pauli approximation. © 1993 John Wiley & Sons, Inc.
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  • 61
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    International Journal of Quantum Chemistry 48 (1993), S. 219-226 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In our previous work, the stopping properties of metallic and covalent films were investigated. Here we consider an ionically bound film. The energy loss of a proton in an LiF monolayer (LiF-1L) is calculated in orbital fashion, based on kinetic theory. The required momentum density and mean excitation energy are obtained from the local density approximation and local plasma approximation respectively. For comparison, the LiF molecule is treated by use of a large intermolecular distance in the film. We find the stopping cross section of the LiF molecule to be only slightly larger than that for the LiF-1L. The Bragg rule (additivity of stopping for the corresponding atoms) is not valid for the ionically bound molecule nor the corresponding extended system, but may be valid if additivity of stopping of atomic ions is assumed. © 1993 John Wiley & Sons, Inc.
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  • 62
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    International Journal of Quantum Chemistry 48 (1993), S. 249-261 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We evaluate binding energies, ionization energies, and second-order energy differences as functions of valence electron number for small spherical clusters of stabilized jellium, using the Kohn-Sham equations with the local-spin-density (LSD) approximation. Cohesive energies are also reported. A comparison is made with semiclassical formulas (liquid drop model and Padé approximant, with surface and curvature coefficients derived from first principles). These formulas nicely average the shell-structure oscillations of the energy, which are found to be almost the same as for ordinary jellium. Spherical clusters with 1, 7, and 9 electrons have binding energies very close to those of the semiclassical predictions. © 1993 John Wiley & Sons, Inc.
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  • 63
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    International Journal of Quantum Chemistry 48 (1993), S. 269-285 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We exploit the unitary group formalism in formulating a multiconfigurational single-reference coupled cluster method for cases involving one or two electrons in open shells. The linear version of CCSD theory for the simple open shell case and for low lying singlet states of closed shell systems are considered in detail. The entire formalism is related to the unitary group based CISD method, and explicit expressions for size-extensivity corrections, leading to the L-CCSD formalism, are given. An illustrative example of the minimum basis set model of the BeH radical is also presented. © 1993 John Wiley & Sons, Inc.
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  • 64
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    International Journal of Quantum Chemistry 48 (1993), S. 303-308 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This article gives an improved derivation for U(n1 + n2) ⊃ U(n1) × U(n2), SN1+N2 ⊃ SN1 × SN2, and other transformation coefficients by using a series of elementary Racah transformations. These transformation coefficients can be expressed generally in terms of a product of segments containing 6j symbols and easily calculated. Possible segment factors are given in Table I. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 45 (1993), S. 609-618 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method using the Svartholm iterative procedure to solve atomic Hartree-Fock equations in momentum space is defined and applied to the ground states of Be and B+. The calculated atomic orbital properties follow a monotonic and stable convergence, but with rates of convergence depending on each property. The evolution of the orbitals during the iterations is explained by the combined actions of the variational principle, the Svartholm iterative procedure, and the momentum space representation. © 1993 John Wiley & Sons, Inc.
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  • 66
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    International Journal of Quantum Chemistry 45 (1993), S. 637-647 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a new numerical method for solving the Schrödinger equation in the case of scattering or tunneling states. As an example, we study a model of the scanning tunneling microscope. The method uses a finite-element approximation of the wave function in the region of the scattering potential. From the wave function that we obtain, we derive the tunnel current density. © 1993 John Wiley & Sons, Inc.
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  • 67
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    International Journal of Quantum Chemistry 48 (1993), S. 355-361 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetic energy component is shown to be a well-defined quantity in the divide-and-conquer method. This kinetic energy converges to the conventional Kohn-Sham kinetic energy when the numbers of the “buffer atoms” for subsystems increase. Numerical results from sample calculations confirm that the kinetic energy component converges to the Kohn-Sham value as the basis set increases. © 1993 John Wiley & Sons, Inc.
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  • 68
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    International Journal of Quantum Chemistry 48 (1993), S. 377-384 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper considers two types of 2 × 2, 3 × 3, and 4 × 4 determinantal inequalities. The elements of one type are 〈rn〉, while the elements of the other type are c〈rn〉;, where c = 3 + n. The 2 × 2, 3 × 3, and 4 × 4 determinantal inequalities involve n = -1, 0, 1, n = -1, 0, 2, 3, 4, and n = -1, 0, 1, 2, 3, 4, 5. The two types of 2 × 2, 3 × 3, and 4 × 4 inequalities are used to obtain lower bound estimates of 〈r〉, 〈r3〉, and 〈r5〉 for the noble gas atoms He, Ne, Ar, Kr, and Xe. The values of these quantities obtained from the inequalities are compared with the quantum mechanical values of Boyd, who calculated them with the near Hartree-Fock analytical wave functions of Clementi and Roetti. © 1993 John Wiley & Sons, Inc.
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  • 69
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    International Journal of Quantum Chemistry 48 (1993), S. 385-397 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Relativistic quantum defect orbital (RQDO) calculations, with and without explicit account for corevalence correlation, have been performed on several electron transitions in the zinc and cadmium isoelectronic sequences, which are of interest in astrophysics and fusion plasma research. A comparative study with other theoretical results and experimental measurements has also been carried out. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. 431-450 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We study integrals that arise in the calculation of electric multipole moments. A computational approach is developed to evaluate these integrals in an STO basis set in a straightforward, yet somewhat untraditional fashion. The computation involves a simple three-step procedure: translation of all Cartesian parts to one center, local evaluation, and a single one-sided rotation into the molecular frame. Some assessment on this method is discussed. An implementation of the method is presented in this paper to compute overlap, dipole, quadrupole, octopole, and hexadecapole moment integrals in a basis set that includes up to g orbitals. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 46 (1993), S. 651-669 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Monosubstituted benzenes, in which the substituents participate in the π-electron system, are studied following a classification in two classes according to the π-electronic structure of the substituent. For this type of molecule, a relation is established between the nature of the substituent and, on the one hand, the energies of the two highest occupied molecular orbitals and, on the other hand, their respective differences. The two orbitals referred to above have π-character and belong to the a2 and b1 species if a C2v point group is assumed. Simple symmetry arguments lead to the conclusion that the a2 orbitals have, essentially, an intraring character, whereas the π-orbitals of the substituents do give an important contribution to the b1 orbitals. Therefore, an a2 electron must have a larger interaction with the benzene ring and a smaller kinetic energy, whereas a b1 electron must have a larger interaction with the substituent and a larger kinetic energy. It is also expected that the changes in the π-electronic structure of the substituent must much more influence the variations on the b1 energies and on the components of orbital energies associated with the substituent than the variations on the a2 energies and on the intraring components of the orbital energies. A modified version of the MOPAC program was prepared to perform the decomposition of the orbital energies in their kinetic and potential energy components and these in their monocentric and bicentric terms. MNDO calculations on nine monosubstituted benzenes, using the modified MOPAC program, give good confirmation of the symmetry predictions and prove the consistency of the classification of the substituents that is introduced. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. 89-106 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electrostatic calculations of the pKa of ionizable groups in the reaction center of Rhodopseudomonas (Rps.) viridis were carried out to investigate three possible mechanisms for proton transfer to the singly reduced acceptor ubiquinone QB. The program DelPhi, which solves the Poisson-Boltzmann equation given the distribution of charges and dielectric boundaries, was used to determine the electrostatic potential. The shift in pKa of the titratable residues in the QB binding pocket in response to the one-electron reduction and following protonation of QB was obtained from calculated interactions with the reaction field, background protein dipoles, charged cofactors, and other ionizable residues. A limited number of bound waters was also included in the computations as titrating sites. Their titration behavior was shown to be strongly coupled to neighboring ionizable sites. The results show that strong electrostatic interaction between the radical anion QB-· and a neighboring serine residue (SER L 223) as well as the protein environment stabilize a system in which the incoming proton is localized on serine and only shared in a hydrogen-bonding relationship with QB-·. These results hint to the possibility that actual proton transfer to QB-· only occurs after a second negative charge has been added to the system through transfer of a second electron either to the menaquinone QA, with formation of the QB-· QA-· system, or to QB-·, leading to the doubly reduced QB2-. This preposition is consistent with spectroscopical and electron nuclear double resonance (ENDOR) experimental results for bacterial reaction centers (RCs) failing to find evidence for the existence of the protonated semiquinone QBH·. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. 181-190 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is first demonstrated that a simple Morse potential can fit very well the ab initio interaction energy for both the linear H bond of the water dimer and the bifurcated arrangement in HOH‥HOCHCHOH, using simple physical properties as the parameters in the function. This energy correlates linearly with the stretching observed in the internal OH bond of the proton donor water, leading to the formulation of an analogous Morse function that can describe the latter stretch. Although simple physical parameters can be used for the linear H bond, a good fit is achieved in the bifurcated case only after the parameters are adjusted empirically. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. ix 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    International Journal of Quantum Chemistry 48 (1993), S. 213-230 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Metropolis Monte Carlo and Poisson-Boltzmann calculations were done to quantitatively assess the conditions under which counterion condensation (CC) theory could be considered valid. The fundamental prediction of condensation theory, that the number of counterions bound to a polyelectrolyte molecule can be predicted by a single parameter describing the linear charge density of the charged system, was shown to be quantitatively correct for a range of conditions. To define the number of counterions bound, it was necessary to use an energy-based criterion by which ions that interact with the polyion with an energy less than -kT were considered bound. Using this criterion, Monte Carlo calculations on systems consisting of charged cylinders and a neutralizing number of counterions in a dielectric continuum showed that the number of bound counterions was quantitatively predictable by the CC relation (1-1/ξ) for systems with a linear charge density and dimensions approaching those of duplex or triplex DNA. Poisson-Boltzmann (PB) calculations on cylinders with different linear charge densities and radii have been done to assess the limits of the CC prediction that the number of counterions bound is a constant even as the bulk concentration of electrolyte in the surrounding is increased. As in the case of the MC calculations, the validity of the CC prediction is seen to increase with increasing linear charge density of the charged cylinder. The agreement between PB and CC is seen to be very good for highly charged cylinders. The results described here provide justification for the use of CC theory for interpreting experimental data on polyelectrolytes of the approximate dimensions and linear charge density of duplex or triplex DNA. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. 25-32 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    International Journal of Quantum Chemistry 46 (1993), S. 109-118 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently developed self-consistent crystal field (SCCF) method is applied to two suggested crystal structures of solid hydrogen fluoride, polar and nonpolar, respectively. Constrained geometry optimizations are performed and the results are compared with experiment and previous theoretical studies. Comparisons are also made with a previous SCCF study on hydrogen cyanide. The Pauli repulsion, dispersion, and “classical” crystal field contributions to the lattice energy are calculated. © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. 163-173 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have used the ab initio technique of UHF/LANL 1 MB to study the interactions between absorbed oxygen atoms and molecules with their host nickel lattice. The host lattice is approximated by a small cluster of nickel atoms that are arranged as face-centered-cubic, except for a tubular void described by the absence of three or four lattice elements. The oxygen absorbates are placed, one at time, within this cavity. We conclude that, for tubular cavities, the interaction between the nickel lattice and the oxygen absorbates is stronger than the interactions between pairs of oxygen atoms, suggesting that the absorbates are mostly atomic (as apposed to diatomic) in character, while the (energetically) most preferred number of oxygen atoms to reside inside an n-site, tubular hollow of nickel is simply (n - 1). © 1993 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 48 (1993), S. 175-186 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An ab initio perturbed ion study using X-ray diffraction data has been carried out for ZrSiO4 (zircon), ZrO2 (monoclinic zirconia, baddeleyite), and SiO2 (α-cristobalite) crystal lattice structures. The different substitutions of V4+ for Zr4+ and Si4+ occurring in these host lattices have been analyzed. Geometry optimizations have been performed with the aim of determining the relative stability, cell parameters, and force constants of radial displacement associated with the local relaxation for pure and doped structures. Numerical results are confronted against experimental data and compared with previous results. The geometrical cell parameters of different structures obtained by computer simulation and the results of the X-ray diffraction studies agree with previous experimental data. For the zircon lattice, the substitution of V4+ for Zr4+ at an eightfold-coordinated site is energetically favorable while the substitution of V4+ for Si4+ at a fourfold-coordinated site is unstable. For ZrO2, the substitution of V4+ for Zr4+ is energetically favorable while the substitution of V4+ for Si4+ in SiO2 is energetically unfavorable. There is less sensitive influence of the crystal lattice parameters for substitutions occurring at the eightfold-coordinated ion site in ZrSiO4 and SiO2 structures. The doping process produces a decrease of force constant (k) values associated with the breathing fundamental vibrational mode for all structures. The k associated with the radial displacement in dodecahedral substitution in the ZrSiO4 structure is especially high. The force constants for this movement in tetrahedral substitution in the ZrSiO4, ZrO2, and SiO2 structures have a lower value. The differences between ionic radii reported by Shannon and Prewitt of the species concerned in the doping process are not capable of explaining the relaxation of crystal lattice parameters in the ZrO2 and SiO2 structures. © 1993 John Wiley & Sons, Inc.
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  • 80
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    International Journal of Quantum Chemistry 48 (1993), S. 227-243 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Results of first-principles, density-functional, LMTO calculations on quasi-one-dimensional systems are presented. Special emphasis is put on the problems related with studying the properties of real materials by means of electronic structure calculations. As examples we discuss undoped and doped trans polyacetylene, an MX chain compound, CaNiN, and a comparison between polycarbonitrile and hydrogen cyanide. It is argued that single-chain calculations on undoped polyacetylene predict a bond-length alternation, whereas this may be suppressed in multichain calculations. For an MX chain we demonstrate the importance of including the full ligand structure, whereas many properties of CaNiN can be understood as intrinsic to single chains. A comparison between the covalently bonded polycarbonitrile and the hydrogen-bonded hydrogen cyanide reveals differences between delocalized and localized electrons but also inaccuracies in the relative total energies. Finally, results for doped trans polyacetylene indicate relatively large electronic dopant-polymer hopping integrals as well as problems in describing electron transfers for weakly interacting systems when using a local-density approximation. In total it is demonstrated that reliable and useful informations are obtained in most cases, but also that one has to be careful in choosing the idealized system that is to represent the real material and that certain aspects of the local-density approximation should be improved. © 1993 John Wiley & Sons, Inc.
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  • 81
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    International Journal of Quantum Chemistry 46 (1993), S. 675-688 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The method proposed by Singh for the calculations of lower bounds to atomic binding energies has been generalized to encompass upper bounds as well. The result is a pair of related matrix eigenvalue problems, constructed from similar sets of basic matrix elements, with the solution of one yielding the tower bound, and of the other, the upper bound. The upper bounds are identical to those calculated by the Rayleigh-Ritz method, which can be useful when the inversion of the normalization matrix is ill-conditioned. The lower bounds are comparable with the best available in the literature. © 1993 John Wiley & Sons, Inc.
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  • 82
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    International Journal of Quantum Chemistry 48 (1993), S. 321-330 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Techniques for computing the multicenter integrals required for molecular calculations for orbitals for which the radial factors are given numerically are described. The methods make extensive use of a numerical algorithm for computing spherical Bessel transforms. The feasibility of using these methods is demonstrated by applying them to SCF calculations for the methane molecule. © 1993 John Wiley & Sons, Inc.
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  • 83
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    International Journal of Quantum Chemistry 48 (1993), S. 451-466 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Recently we presented an extension of the direct reaction field (DRF) method, in which a quantum system and a set of point charges and interacting polarizabilities are embedded in a continuum that is characterized by a dielectric constant ∊ and a finite ionic strength. The reaction field of the continuum is found by solving the (linearized) Poisson-Boltzmann equation by a boundary element method for the complete charge distribution in a cavity of arbitrary size and form. Like many other authors, we found that the results depend critically on the choice of the size of the cavity, in the sense that the continuum contribution to the solvation energy decreases rapidly with the relative cavity size. The literature gives no clues for the definition of the cavity size beyond “physical intuition” or implicit fitting to experimental or otherwise desired results. From theoretical considerations, a number of limitations on the position of the boundary are derived. With a boundary defined within these limitations, the experimental hydration energies cannot be reproduced, mainly because of the neglected specific interactions. In addition, we found that the description of the solute's electronic states also depends on the solvation model. We suggest that one or more explicit solvent layers are needed to obtain reliable solvation and excitation energies. © 1993 John Wiley & Sons, Inc.
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  • 84
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    International Journal of Quantum Chemistry 48 (1993), S. 491-499 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Statistical mechanics Monte Carlo simulations of the proton transfer in [H3N—H—NH3]+ in aqueous solution have been carried out using the combined quantum mechanical and molecular mechanical AM1/TIP3P potential. As in the gas phase, squeezing and stretching motions of the donor-acceptor distance have profound effects on the proton transfer. Solvation increases the activation free energy of the proton transfer by 3 kcal/mol over that in the gas phase. The results suggest that the combined QM/MM potential may be used in models that treat the proton motion quantum mechanically and the solvent dynamics classically. © 1993 John Wiley & Sons, Inc.
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  • 85
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    International Journal of Quantum Chemistry 48 (1993), S. 547-566 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To assess the flexibility of a molecule (and to establish how it is affected by external conditions), one can analyze the nature of the configurations encountered along molecular dynamics (MD) trajectories. If the molecule is initially at a rigid conformation, then it will mostly undergo deformations which conserve the initial fold or shape. That is, a rigid molecule will exhibit very small shape fluctuations about the initial shape, whereas large fluctuations will be characteristic of flexible molecules. Establishing the persistence of molecular shape features along MD trajectories is a valuable piece of information in the analysis of dynamic phase transitions in large biomolecules, including protein folding and polymer melting. In this work, we discuss a methodology to monitor macromolecular shape along dynamic trajectories. The procedure uses descriptors which convey some global shape features, including the compactness and degree (and complexity) of entanglement in a backbone. The method is used to follow shape fluctuations in chain molecules (carboxylic acids) and cyclic molecules (cycloalkanes), with 6 up to 12 carbon atoms. The role of variable temperature and number of atoms on these fluctuations is analyzed. The results indicate a relatively constant average shape in the cyclic molecules, although the amplitude of the shape fluctuations increases with the temperature. In contrast, the shape of the chain molecules is affected largely at high temperature, where folding or “melting” becomes dominant. At low temperature, the chains are very rigid. In the high temperature regime, the shape fluctuations in chains are large and very similar to those in cycles. In other words, the distinction between configurations of cycles and chains starts to blur at high temperature, thus suggesting that chains are mostly folded into turns. The results would appear not to depend very strongly on the functional group at the end of the chain. © 1993 John Wiley & Sons, Inc.
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  • 86
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    International Journal of Quantum Chemistry 48 (1993), S. 587-598 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction pathways of the interaction of the methane molecule with the cadmium atom in the ground state (1S) and the two lowest excited states (3P, 1P) were determined using Hartree-Fock followed by multireference configuration interaction plus second-order multireference Möller-Plesset calculations. No spontaneous activation of the methane molecule was observed by these electronic states of the cadmium atom due to the existence of activation barriers of 107.2, 27, and 17.3 kcal/mol, respectively. The geometry and electronic structure of the HCdCH3 intermediate molecule and the CdH and CdCH3 products involved in the reaction were also determined, as well as the dissociation pathway of HCdCH3 towards the CdH + CH3 and H + CdCH3 products. We found that the HCdCH3 intermediate reaches the final products without any barriers and also that the initial reactants in the ground state need to be provided with 88.5 kcal/mol to obtain the CdH + CH3 products and with 99.8 kcal/mol to get the H + CdCH3 products. © 1993 John Wiley & Sons, Inc.
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  • 87
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    International Journal of Quantum Chemistry 48 (1993), S. 607-620 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Slow electron scattering from CH4, and thermal positrons annihilating with a variety of organic molecules, will first be discussed, the major role of molecular polarizability being the focal point. In the same context, initially neutral carbon clusters with an added, but now bound, electron will be considered, and in particular for C60- the role of polarizability will again be stressed. Some attention will also be paid to electron-electron interaction in C60- -. Photoelectron spectroscopic data on ionization potentials for both linear and terminated polyacenes will then be briefly considered, both the role of hole localization and hole-hole interaction being referred to in these quasi-two-dimensional systems. Finally some directions for further work are proposed. © 1993 John Wiley & Sons, Inc.
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  • 88
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    International Journal of Quantum Chemistry 48 (1993), S. 621-632 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have located five zero-angular-momentum resonance states in the funnel associated with the lowest conical intersection of the Na (3p) · H2 exciplex, and we have characterized the four narrowest of these in terms of total and partial widths. The resonant contributions of the metastable states to state-to-state energy transfer greatly exceed the background contributions. © 1993 John Wiley & Sons, Inc.
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  • 89
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    International Journal of Quantum Chemistry 47 (1993), S. 155-173 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A mutually consistent method to calculate excitation energies and corresponding transition densities is proposed. The method is based on the extended Brillouin's theorem that is derived from the nonstationary variation principle. Within the proposed procedure, the Brillouin's conditions, which appear in this extension, are used as a set of nonlinear equations for molecular orbitals and configuration interaction coefficients of the trial ground- and excited-state functions. The excitation energy is an eigenvalue of the set. To some extent, this procedure is related to the variational treatment of the conventional random-phase approximation within the equation-of-motion method. The basic features of the proposed procedure are discussed and it is illustrated by numerical examples. © 1993 John Wiley & Sons, Inc.
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  • 90
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    International Journal of Quantum Chemistry 47 (1993), S. 213-223 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a numerical experiment, the dynamics of natural decay of a metastable state is shown to be strongly affected by the presence of an external time-varying electric field of high intensity. The metastable state, depending upon its level width, is shown to be stabilized by a near-resonant electric field. The applied field may even cause population transfer to a neighboring bound level that is not directly populated by the natural decay process. The effects of continuous and pulsed perturbations are both analyzed numerically, and perturbation, theoretically. © 1993 John Wiley & Sons, Inc.
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  • 91
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    International Journal of Quantum Chemistry 47 (1993), S. 231-238 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The helical region of the potential energy surface of blocked α-aminoisobutyric acid (Aib) dipeptide has been studied by using ab initio and semiempirical quantum mechanical methods, as well as force-field-derived methods. Depending on the method, an α-helix or a 310-helix is found to be the energy minimum. The conformations obtained from computations performed at the ab initio quantum mechanical level, as well as by using the AMBER force field, are in excellent agreement with X-ray data. Semiempirical results display some important differences with regard to experimental data. On the other hand, the CVFF force field predicts no energy minimum in the helical region of the Aib potential energy surface. © 1993 John Wiley & Sons, Inc.
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  • 92
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    International Journal of Quantum Chemistry 48 (1993), S. 355-365 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ab initio second-order effective valence-shell Hamiltonian that is based on the multireference many-body perturbation theory has been applied to determine adiabatic potential energy curves for the valence states of NH2+ and PH2+ dications. For PH2+, three low-lying quasi-bound states (X1∑+, a3 Π, A1Π) are found and their spectroscopic constants are characterized. In NH2+, no quasi-bound states are found. The potential energy curves for NH2+ are compared with those for PH2+ to understand the difference between these two valence isoelectronic cations. © 1993 John Wiley & Sons, Inc.
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  • 93
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    International Journal of Quantum Chemistry 48 (1993), S. 385-385 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 94
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    International Journal of Quantum Chemistry 48 (1993), S. 375-384 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The use of the counterpoise method for the mitigation of basis set superposition error at the correlated level is discussed. Evidence is presented to show that the ghost basis plays a dual role in the counterpoise method: The orbitals of the system are improved by the ghost basis but at the expense of a nonphysical increase in the dimension of the virtual space. This second factor has no effect on application of the counterpoise method at the SCF level but it makes the use of the counterpoise method at the correlated level much less straightforward. © 1993 John Wiley & Sons, Inc.
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  • 95
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    International Journal of Quantum Chemistry 48 (1993), S. v 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 96
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    International Journal of Quantum Chemistry 48 (1993), S. 7-15 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Hydroxyl-stretching frequencies (vOH) were estimated for a number of 4-substituted and 2,6-disubstituted phenols using the AM1 all-valence electron molecular orbital approximation. There was significant correlation between calculated and experimentally observed frequencies with better correlation observed with the gas phase as compared with dilute solution-phase values. Significant Hammett sigma-rho relationships were recorded for the 4-substituted phenols, consistent with experimental observations. The vOH stretching frequency associated with the equilibrium structure of 2,6-di-t-butylphenol was calculated to be 15 cm-1 higher than that of phenol and this increase was attributed to steric interactions that act to effectively shorten the OH bond length. © 1993 John Wiley & Sons, Inc.
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  • 97
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    International Journal of Quantum Chemistry 48 (1993), S. vii 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 98
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    International Journal of Quantum Chemistry 48 (1993), S. 93-100 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In many situations, the most long-ranged parts of the exchange and correlation holes surrounding an electron cancel one another. Apparently for this reason, local spin density and generalized gradient approximations are more accurate for exchange and correlation together than for either alone. A study is made of the ability of these density functionals, and also the unmodified second-order gradient expansion, to describe various short-range effects in atoms: the correlation contribution to the interacting kinetic energy, the antiparallel-spin correlation energy, and the correction to the random phase approximation. Generalized gradient approximations, constructed with no adjustable parameter from the electron gas of slowly varying density, are found to give results of useful accuracy for real atoms. Prospects are discussed for use of the new functionals to improve the accuracy of electronic-structure calculations. © 1993 John Wiley & Sons, Inc.
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  • 99
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    International Journal of Quantum Chemistry 48 (1993), S. 131-146 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The structural and electronic properties of polysilane, (SiH2)x and polysilene, (SiH)x will be compared with their carbon-based analogues polyethylene, (CH2)x, and polyacetylene, (CH)x, as investigated by the ab initio crystal orbital method using several, partly highly polarized, atomic basis sets of increasing size at the Hartree-Fock (HF) level and by including electron correlation effects up to the third order of Møller-Plesset perturbation theory. The single-particle energy bands have also been corrected for correlation effects applying the electron polaron quasiparticle (QP) method. Electron correlation plays an essential role in stabilizing the gauche conformation of polysilane against the trans form. While the gauche-trans energy difference is about 0.25 mH at the HF level, it will be reduced to about -0.8 mH due to correlation. Also the energy bands and band gaps will be substantially modified in going from the HF to the QP description, resulting in ΔEgap = 9.5 and 11.8 eV for trans and gauche polysilane at HF, and 5.12 and 5.56 eV at the QP level, respectively. Polysilene turns out to be a semiconductor (similar to polyacetylene) for which bond-alternation energetically stabilizes the semiconducting phase (as compared to the equidistant, metallic one) by 1.4 mH at the HF and by 0.6 mH at the MP2 levels, with bond alternations of ΔR = 0.1327 and 0.0865 Å, respectively. © 1993 John Wiley & Sons, Inc.
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  • 100
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper, methods of correlation corrections for 1D and 2D periodic systems as well as for 1D nonperiodic polymers are reviewed. These procedures include not only the correlation correction of the total energy per unit cell, but also the recalculation (using the generalized electronic polaron model) of the band structures themselves in the periodic case, as well as the density of states (DOS) in nonperiodic chains. In both cases the inverse Dyson equation was used in an iterative way in the MP/2 and MP/3 level. The programming of the same procedure for the coupled cluster method is in progress. In a number of examples (ground state properties of (SN)X, the gap of alternating trans-polyacetylene, the exciton spectrum of diacetylene, polyglycine and polyalanine, of a cytosine stack, the bulk modules of polyethylene, the hopping conductivity of insulin), we have obtained quite good agreement with experiment, if a good basis set ab initio calculation was supplemented of the correlation correction at the bands or DOS curves, respectively. In the second part of the paper a new method is developed to take into account the simulataneous effect of a static and a periodic time-dependent electric field on the one-electron wave functions and on the total electronic energy of a periodic polymer. The method uses a variational technique (coupled Hartree-Fock equations) instead of perturbation theory for the time-dependent one-electron wave functions. The proper treatment of the potential caused by the field, which in this way does not destroy the periodicity of the polymer, as well as the inclusion of correlation at the MP/2 level of the t-and ω-dependent quasienergy per unit cell is part of the method. Finally, it is shown how one obtains in the usual way the different polarizabilities, second- and third-order hyperpolarizability tensor elements with the help of the derivatives of the quasienergies according to the different field (both static and time-dependent) components. © 1993 John Wiley & Sons, Inc.
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