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  • 1980-1984  (2,276)
  • 1890-1899
  • 1981  (1,138)
  • 1980  (1,138)
  • Inorganic Chemistry  (1,461)
  • Atomic, Molecular and Optical Physics  (568)
  • Physical Chemistry  (215)
  • Immunohistochemistry
Material
Years
  • 1980-1984  (2,276)
  • 1890-1899
Year
Keywords
  • 1
    ISSN: 1432-2307
    Keywords: Thyroid gland ; Thyroid tumor ; Immunohistochemistry ; Thyroid hormone ; Functioning tumor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Thyroid tissue specimens from 27 patients with thyroid tumors were examined for thyroxine (T4) and triiodothyronine (T3) by the peroxidase-labeled antibody method. The result revealed localization of T4 in 12 of the 14 follicular adenomas, in all the 8 papillary carcinomas and in 1 of the 3 follicular carcinomas studied, and of T3 in 13 of the 14 follicular adenomas, in all the 8 papillary carcinomas and in all the 3 follicular carcinomas. In the tumor tissue, the thyroid hormones were demonstrated in the colloid substance, on the luminal surface of tumor cells and in their cytoplasm. Compared with nontumorous thyroid tissue, the tumor tissue showed localization of the hormones predominantly in the cytoplasm and to a lesser extent in the colloid substance, with conspicuous variations in tissue distribution of positive areas and intensity of staining. This tendency was more marked in thyroid carcinomas. The demonstration of T4 and T3 in routine histological paraffin sections of formalin-fixed thyroid tissues in this investigation indicates potential usefulness of thyroid hormone detection by the peroxidase-labeled antibody technique. It is an effective diagnostic tool for evaluating the functional activity of thyroid tumors as well as for determining whether a malignant growth under examination originates from the thyroid.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Virchows Archiv 391 (1981), S. 315-322 
    ISSN: 1432-2307
    Keywords: Immunohistochemistry ; Salivary glands ; Actin ; Myoepithelial cells
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary A study of actin distribution in human salivary glands was performed, using smooth muscle antibodies from a patient with active chronic hepatitis. Immunoperoxidase labelling methods were found to give a good staining intensity for actin containing cells. The peroxidase antiperoxidase (PAP) method gave a stronger reaction than the double layer method, but the latter was sensitive enough for our purpose and was less time consuming. Sections from formalin fixed and paraffin embedded specimens were negative for actin staining while frozen sections showed good staining results. Sections from specimens which were washed for 12 h at 4 ° C showed less background staining. Strong staining was found in myoepithelial cells lying around the acini, intercalated ducts and parts of the striated ducts. The number of myoepithelial cells around acini increased in the following order: the parotid gland, the submandibular gland, the sublingual gland and the small glands of the lip. This distribution indicates the importance of myoepithelial cells in the process of physical expression of saliva. Cytoplasmic staining in the basal epithelial cells of the striated ducts illustrates that these cells may be involved in some sort of secretion. This staining might also suggest a histogenetic origin for myoepithelial cells.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-2307
    Keywords: Giardiasis ; Immunohistochemistry ; Morphometry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Jejunal mucosa biopsies from non-immune deficient patients with Giardia lamblia infestation were examined and showed three different groups of mucosal changes, distinguishable on morphological and immunohistochemical grounds. In three patients no morphological or immunohistochemical abnormalities were found (group A). In five patients a normal villous architecture was seen. These biopsies had increased numbers of interepithelial lymphocytes and of immunoglobulin containing cells in the lamina propria, with a relative increase of the number of IgA and IgG containing cells (group B). Two patients with a malabsorption syndrome due to giardiasis had marked villous atrophy, documented by morphometric measurements and large numbers of interepithelial lymphocytes and of immunoglobulin containing cells in the lamina propria, especially IgA and IgG (group C). These findings differ considerably from those in patients with immunodeficiency or gluten sensitive enteropathy. This suggests that when villous atrophy of the jejunal mucosa is found immunohistochemistry of Jejunal biopsy specimens may be helpful in the differential diagnosis between mere giardiasis and giardiasis superimposed on immunodeficiency or gluten sensitive enteropathy.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 54 (1981), S. 269-273 
    ISSN: 1432-0533
    Keywords: Malignant astrocytoma ; Extracranial metastasis ; Glial fibrillary acidic protein ; Immunohistochemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary A 23-year-old man presented with signs of increased intracranial pressure. CAT scan, cisternogram, and angiogram on admission were reported to be normal. Lumbar puncture revealed elevated pressure and protein of 500 mg-%. CSF cytology revealed malignant tumor cells. A brain biopsy and decompression were carried out to reveal diffuse subarachnoid invasion by malignant tumor cells. Immunohistochemical studies using anti-glial fibrillary acidic protein serum revealed tumor cells to be positive for GFA protein. A lumbosacral CAT scan 9 days after surgery revealed numerous sclerotic densities involving bony pelvis, sacrum, T-12 vertebra and left femoral head. No definite primary site of tumor was found antemortem in the brain or any other organ. Autopsy demonstrated diffuse subarachnoid spread of malignant tumor in brain and spinal cord. Malignant astrocytoma was found in the midline pons projecting into the 4th ventricle. The histology of the neoplasm was identical in all sites including bone. No other tumor was found at autopsy. The vascular invasion by the tumor cells in the pons and distant bony metastasis in this case suggest hematogenous spread. A review of the lumbar X-ray taken 6 weeks prior to admission and the presence of well-established bony lesions within 10 days of craniotomy suggest that this is a rare case of extraneural metastasis of glioma occurring prior to surgery. The midline location of clinically occult pontine glioma and the presence of bony metastasis created difficulty in the diagnosis but immunohistochemical studies proved to be crucial in establishing correct diagnosis antemortem.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Development genes and evolution 190 (1981), S. 127-131 
    ISSN: 1432-041X
    Keywords: Uteroglobin ; Radioimmunoassay ; Progesterone ; Osmotic minipumps ; Immunohistochemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary This study was undertaken to determine whether the influx of progesterone into the uterine lumen of the rabbit, in the preimplantation period, is dependent onuteroglobin (UGL). Rabbits were ovariectomized and, three months later, treated with two defferent doses of progesterone. Purified UGL was injected into one uterine horn and, as a control,immunoglobulin G (IgG) was injected into the other. After four days, the animals were sacrificed their uteri flushed, and the progesterone content of the washes was determined by radioimmunoassay. Animals with the lower serum progesterone level (2.8 ng/ml) had a significantly different uterine horn progesterone content. The hormone accumulation in the horn containing UGL was 2.3 to 7.5 times higher than in the horn containing IgG. Animals with a higher serum progesterone level (7.2 ng/ml) showed no differences. The hormone content was equally high in both horns, presumably due to the synthesis of endogenous UGL being reactivated by the hormone treatment. The validity of these experiments as models for the events during early pregnancy and the physiological role of progesterone available inside the uterus are discussed.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Journal of cancer research and clinical oncology 100 (1981), S. 205-211 
    ISSN: 1432-1335
    Keywords: Carcinoembryonic antigen (CEA) ; Human parotid gland ; Immunohistochemistry ; Undifferentiated duct cells ; Histogenetic interpretation of tumors
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Carcinoembryonic antigen (CEA) was analysed in the human parotid gland. Specimens of 31 normal and inflamed parotid glands were studied by the indirect immunoperoxidase technique. The presence of CEA could be demonstrated at the border of the acinar cells and the intercalated duct cells as well as in the undifferentiated duct cells as observed in chronic obstructive parotitis. These observations may explain the presence of CEA in normal human saliva and may provide a new basis for histogenetic interpretation of pathological lesions of the parotid gland, especially of the tumors of the salivary gland tissue.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Virchows Archiv 390 (1981), S. 181-191 
    ISSN: 1432-2307
    Keywords: Experimental islet cell tumour ; Streptozotocin ; Immunohistochemistry ; Ultrastructure ; Cellular dedifferentation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Fourteen rat islet tumours induced by Streptozotocin and nicotinamide were examined by light microscopy with indirect immunoperoxidase staining and by electron microscopy. Most tumours consisted predominantly of B cells, but over a half of the tumours examined showed mixed cellularity with considerable numbers of A cells and small numbers of D or PP cells. Only 4 tumours consisted exclusively of B cells. There was no positive reaction for any kind of specific islet hormone antibodies in 2 tumours. Ultrastructurally, most tumours were composed of cells containing numerous secretory granules with B cell properties, with great variation in size, shape and number. We often encountered enterochromaffin-like cells or atypical granular cells or cells containing non-beta secretory granules. We could not identify, however, the ultrastructural counterparts of A or D cells. The results suggested that the multiplicity of the endocrine cells of rat islet cell tumours might be an expression of the cellular dedifferentiation of tumour cells which could re-differentiate into the whole range of components of the endocrine pancreas.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1432-2307
    Keywords: Gastro-entero-pancreatic (GEP) neuroendocrine system ; Neurohormonal peptides ; Ovarian mucinous cystadenomas/cystadenocarcinomas ; Immunohistochemistry ; Argyrophil endocrine cells
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary In 144 benign mucinous cystadenomas of the ovary, 33 mucinous cystadenomas of borderline malignancy and 64 mucinous cystadenocarcinomas, the incidence of tumours containing argyrophil (and probably endocrine) cells was 18%, 33%, and 53%, respectively. The results of a semiquantitative assessment of the number of argyrophil cells in each individual tumour indicates that the greatest numbers occurred in the cystadenocarcinomas. As, however, the tumour cell density was larger in the cystadenocarcinomas than in the cystadenomas, and as the argyrophil cells often had a patchy distribution in the tumour epithelium, the incidence figures are unreliable. In addition, visualization of the argyrophil cells depends on an adequate fixation which is difficult to achieve in the routine processing of large tumour specimens. Many argyrophil cells in the cystadenocarcinomas displayed immunoreactivity with antisera raised against gastro-entero-pancreatic (GEP) neurohormonal peptides. In ten such tumours immunohistochemical evidence was obtained for the presence of the following neurohormonal peptides in the tumour cells: somatostatin, glucagon, gastrin/CCK, neurotensin, and enkephalin. Four of these ten cystadenocarcinomas were multihormonal, in that three contained two cell populations storing GEP neurohormonal peptides, and one tumour even three such populations. In the benign cystadenomas, however, no immunoreactive tumour cells were found. In those of borderline type, only two harboured immunoreactive cells. In both cases the tumour cells stored gastrin/CCK. The general appearance of the epithelium in the mucinous tumours — a continuous single-cell layer of mucin-producing cells intermingled with argyrophil cells of open type — and the spectrum of neurohormonal peptides observed, indicate an origin from the foregut endoderm.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1432-0878
    Keywords: Pancreatic islets ; Adrenergic innervation ; Insulin secretion ; Chemical sympathectomy ; Adrenalectomy ; Fluorescence histochemistry ; Immunohistochemistry ; Electron microscopy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary Morphological changes in the adrenergic innervation of pancreatic islets after chemical sympathectomy by use of 6-hydroxydopamine and the influence of the sympatho-adrenal system on insulin secretion were investigated in the mouse and rat. Fluorescence histochemistry revealed a clear-cut reduction in the number of adrenergic nerve fibers in the pancreatic islets 2 days after administration of 6-hydroxydopamine; the reduction was more pronounced in the rat than in the mouse. In the rat, a partial regeneration was seen after 6 weeks. In the pancreas of the mouse, after administration of 6-hydroxydopamine, a severe damage of unmyelinated nerve fibers was revealed electron microscopically. However, no ultrastructural or immunohistochemical alterations could be demonstrated in the endocrine cells of the islets. 6-Hydroxydopamine induced a depression of basal plasma insulin concentrations in mice and an elevation in rats. Adrenalectomy depressed basal plasma insulin levels in mice. The α-adrenoceptor antagonist phentolamine enhanced insulin secretion in normal mice. The secretory response of insulin to phentolamine was diminished by chemical sympathectomy and almost abolished by adrenalectomy or the combination of chemical sympathectomy and adrenalectomy. Thus, the effect of phentolamine is probably mediated by liberated catecholamines. It is concluded that basal insulin secretion is partially regulated by the sympatho-adrenal system and that species differences exist in this respect. In addition, the results suggest that endogenous catecholamines have the ability to promote insulin secretion.
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  • 10
    ISSN: 1432-0878
    Keywords: Anterior pituitary ; Immunohistochemistry ; Thyrotrophs ; Postnatal development ; Classification of basophils
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary The postnatal development of rat pituitary thyrotrophs was investigated immunohistochemically on days 1, 3, 5, 10, 15 and 25. Fetal thyrotrophs are strongly immunoreactive. In the postnatal period, however, weakly immunoreactive thyrotrophs increase in number to constitute clusters on days 3–5. The numbers and dimensions of the clusters reach a maximum on day 10. Thereafter the clusters break down to give rise to single, scattered neogenic thyrotrophs. Thyrotrophs in clusters on day 10 were investigated by electron microscopy in adjacent sections. They can be characterized as an immature type of basophil, according to the classification of Yoshimura et al. (1977): 1) Type I basophils, which are irregularly shaped with elongate processes, and characterized by rows of secretory granules about 100 nm in diameter. 2) Type I/II basophils, i.e., forms intermediate between Types I and II, containing less numerous secretory granules about 100–150 nm in diameter. Type II basophils which correspond to the classical thyrotrophs are not fully developed on day 10. Thus, most thyrotrophs develop from the clusters in the neonatal period. Such neogenic thyrotrophs retain the immature characteristics of Type I and I/II cells and may develop into Type II cells during subsequent maturation.
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  • 11
    ISSN: 1432-0878
    Keywords: Immunohistochemistry ; Human tonsil ; T-lymphocytes ; B-lymphocytes ; Quantitative morphology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary T-lymphocytes and B-lymphocytes are identified in tissue sections of human tonsils by applying the unlabelled antibody enzyme method. The epithelium of the tonsils contains a majority of immunoglobulin-positive cells and fewer T-lymphocytes. In the subepithelial zones, areas composed of B-cells predominate, however, regions containing T-lymphocytes are also present. The latter are mainly arranged in the lamina propria around high-endothelial venules and often include plasma cells containing immunoglobulin. Follicles containing germinal centres display a complex structure which changes during development. The lymphocytic cap consists of densely packed lymphocytes, labelled heavily by anti-IgM and anti-IGD, and of individual T-lymphocytes. Germinal centres show a framework of immunoglobulin-positive dendritic reticular cells; they contain some heavily labelled lymphoid cells and several cells weakly labelled by anti-IgM and anti-IgA, as well as a small number of T-lymphocytes. Furthermore, the total areas of T- and B-lymphocytes measured by planimetry may differ considerably between different tonsils. Especially total areas of germinal centres vary to a great extent. The quantitative data on amounts of T- and B-cells achieved by planimetry are comparable to those reported in cellular suspensions of tonsils.
    Type of Medium: Electronic Resource
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  • 12
    ISSN: 1432-0878
    Keywords: Pituitary basophils ; Gonadotrophs ; LH Cells ; Immunohistochemistry ; Pars anterior ; Cell identification
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary Pituitaries from normal, young and adult male rats were fixed either in sublimate-formalin or in glutaraldehyde-osmium. In adjacent Paraplast sections, almost all the gonadotrophs were immunostained with both LH and FSH antisera. The rat LHβ and FSH antisera used were shown to be highly specific by the absorption test and by double antibody radioimmunoassay. Thin and thick adjacent Epon sections were prepared for EM and immunohistochemical examination. Cells stained with the rat LHβ antiserum were identified by LM, and then observed in detail by EM. On the basis of these observations we suggest that the LH cells are arranged in a sequence of basophils, i.e., Types II/III, III, III/IV and IV: Type II/III basophils are elongate with a cytoplasmic process and less vesiculated. They have morphological features of Type II (classical thyrotrophs) and also of Type III basophils. Type III basophils are oval in shape and moderately vesiculated. Both Types II/III and III basophils can be divided into two classes of cell characterized mainly by the existence of only small secretory granules (150–220 nm in diameter) (Type A) or by the coexistence of small and large (350–500 nm) (Type B). Type III/IV basophils are cells intermediate between types III and IV basophils, and moderately vesiculated with an abundance of secretory granules (150–300 nm in diameter). Type IV basophils are large, spherical or oval cells whose RER cisternae are conspicuously dilated; they contain less numerous secretory granules (150–300 nm in diameter). It is concluded that LH cells are not a single cell type, but include a wide range of subtypes.
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  • 13
    ISSN: 1432-0878
    Keywords: Melatonin ; Pineal gland ; Retina ; Harderian gland ; Immunohistochemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary The presence of melatonin is demonstrated in the pineal gland, the retina and the Harderian gland in some mammalian and non-mammalian vertebrates, using a specific fluorescence labelled antibody technique. Four different potent antibodies against melatonin have been used and compared. In the pineal gland of hamsters, mice, rats and snakes, specific fluorescence, mostly restricted to the cytoplasm of the cells, is detected in pinealocytes. Fluorescence is also detected in the pineal organ of fishes, tortoises and lizards, but it has not been possible, from cryostat sections of fresh tissue, to assert which kind of cell is reacting (photoreceptor cells or interstitial ependymal cells). In the retina, fluorescence is almost exclusively restricted to the outer nuclear layer. In the Harderian gland of mammals and reptiles, fluorescence is localized in the secretory cells of the alveoli and mostly restricted to the cytoplasm surrounding the nucleus. These results are discussed in relation to the concept of melatonin synthesis at extrapineal sites independent of pineal production.
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  • 14
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 25-31 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: As an alternative to the density functional approach to estimating total molecular correlation energies, the equation Ecorr=-0.06593 ∑i=1M Ri-0.3916, where Ri=〈r2〉i½ and i runs over the localized molecular orbitals was fitted to 25 STO-3G data points with a root-mean-square error of 0.025 hartree. Other more general equations were tried but no significant improvement was observed in the fit.
    Additional Material: 2 Tab.
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  • 15
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 105-112 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum mechanical calculations have been made of vibrational transition probabilities in the collinear collision of an inert gas atom with either CO2 or OCS. The dependence of the transition probability on the relative translational energy and the reduced mass is similar to that found for atom-diatom collisions. The transition P00 → 10 (excitation of the first stretching mode) is much greater than P00 → 01 (the second stretching mode). This is largely due to the difference in frequencies but it has been shown that there is an independent mass factor responsible for this difference.
    Additional Material: 1 Ill.
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  • 16
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: While the concept of the graph center is unambiguous (and quite old) in the case of acyclic graphs, an attempt has been made recently to extend the concept to polycyclic structures using the distance matrix of a graph as the basis. In this work we continue exploring such generalizations considering in addition to the distance matrix, self-avoiding walks or paths as graph invariants of potential interest for discriminating distinctive vertex environments in a graph of polycyclic structures. A hierachy of criteria is suggested that offers a systematic approach to the vertex discrimination and eventually establishes in most cases the graph center as a single vertex, a single bond (edge), or a single group of equivalent vertices. Some applications and the significance of the concept of the graph center are presented.
    Additional Material: 3 Ill.
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  • 17
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 251-257 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we define the algebraic structure of a reduced fermion density matrix. We relate the algebraic structure to certain symmetry properties of the reduced density matrix.
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  • 18
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 259-269 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method of expansion of molecular orbital wave functions into valence bond (VB) functions is extended to molecular fragments. The wave function is projected onto a basis of mixed determinants, involving molecular orbitals as well as fragment atomic orbitals, and is further expressed as a linear combination of VB functions, characteristic of structural formulas of the fragment but whose remaining bonds are frozen. Structural weights for the fragment are deduced from this expression. Delocalized molecular orbitals are used as a startpoint, as they are after an ordinary SCF calculation. Wave functions of medium-sized molecules may be analyzed with reasonable storage requirements in a computer.
    Additional Material: 1 Tab.
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  • 19
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 413-426 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The generalized branching diagram (GBD) spin representation is defined as the method of sequentially coupling together a number of subsystem spin eigenfunctions using the general rules of angular momentum coupling. It is shown that any GBD representation may also be obtained by Schmidt orthogonalizing a set of cannonical spin-paired (SP) functions, provided the SP basis is suitably ordered. The ordering procedure used is well suited to computer implementation. This is a generalization of results known in the literature for the Yamanouchi-Kotani and for the Serber spin representations.
    Additional Material: 4 Ill.
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  • 20
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 383-399 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The molecule-in-molecule method of computation has been applied in a SCF study of the electronic absorption spectra of 2- and 3-phenylfurans and 2,2′- and 3,3′-bifurans. The computed values for the transition energies and band intensities differ for the different isomers and help one to assign the preferred conformer of the studied molecules. Computations were performed on planar as well as nonplanar conformers. The calculated parameters as well as the interaction energy suggest all-planar configuration for the studied molecules. A model potential for the sigma framework for the ortho-hydrogens is considered. The calculated steric repulsion energy is negligible compared to the π delocalization. The height of the rotational barrier was larger for 2-phenylfuran than for 3-phenylfuran, and larger for 2,2′-bifuran than for 3,3′-bifuran. This result is in accord with predictions based on the extent of “π” conjugation in these molecules.
    Additional Material: 4 Ill.
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  • 21
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 451-461 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio LCAO SCF MO calculations are carried out on the ground state and d-d transition states of CoF64-, CoF63-, and CoF62- complexes with a basis set of more than double-zeta quality. To obtain a better description for the excitation energy of d-d transition states, a ligand field configuration interaction calculation is performed. The calculation is improved further by taking into account the correlation energy in the central metal atom and it gives good results for the observed excitation energies. Especially, the excitation energies for the states which have the same configuration as the ground state agree with observed ones within about 1 kK. The excitation energies of several charge transfer states in the CoF62- complex are also computed at the level of SCF MO calculation and the assignments are made for the four strong bands observed in the energy region higher than the weak d-d bands.
    Additional Material: 10 Tab.
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  • 22
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 483-484 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Tab.
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  • 23
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 505-514 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The properties of the algebraic structure of fermion density matrices are studied. The algebraic structure of a density matrix leads to a more varied and detailed classification scheme than that offered by the usual shell structure approach. Investigation of the algebraic structure of fermion density matrices by the methods of algebraic topology leads to a classification scheme based on Betti numbers.
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  • 24
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 25
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 41-48 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Synchrotron radiation has been used to determine the fluorescence decay parameters of a tryptophan-containing oligopeptide, Lys-Trp-Lys, bound to nucleic acids. All fluorescence decay curves can be fitted by a sum of two exponentials. The two lifetimes very likely correspond to two conformational states of the oligopeptide. The mean fluorescence lifetime of the peptide is not markedly affected upon binding to nucleic acids even though the fluorescence quantum yield is strongly reduced. A model is presented that accounts for the existing fluorescence data: two consecutive complexes are formed both involving electrostatic interactions. In one of the complexes the tryptophyl ring is stacked with the nucleic acid bases and its fluorescence is completely quenched. The other complex emits a fluorescence having characteristics which are similar to those of the free peptide.
    Additional Material: 2 Ill.
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  • 26
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 1099-1103 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: After emphasizing the importance of absorption spectra of metal clusters, with special reference to alkali halide IR absorption, the equilibrium configurations and the binding energies of alkali halide clusters are discussed in terms of a very simple two-body interaction.
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  • 27
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    International Journal of Quantum Chemistry 19 (1981), S. 1133-1135 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 28
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    International Journal of Quantum Chemistry 20 (1981), S. 167-178 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The paper reports comparison of electrostatic charge and energy distribution on the basis of the CNDO/2 method for six forms of prostaglandins-PGF2α, PGF1β, PGE1, PGE2, PGB1, and PGA1-having diverse physiological action. The isopotential mapping done in three dimension showed that the lower value of electrostatic potential and proximity of the two low energy regions around O9 and O11 in PGE2 and PGF2α is probably responsible for their higher abortificient activity. We also compare here the variation of the long- and short-range interaction between ring-chain and chain-chain portion of different forms and compared them with the variation in their action.
    Additional Material: 4 Ill.
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  • 29
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We performed ab initio pseudopotential and CNDO calculations on γ-aminobutyric acid (GABA) and its Ca2+ and Mg2+ clathrates. We were particularly interested in the rotational barrier existing between two extreme conformers of GABA and its modification upon metal complexing. We found that the pseudopotential method predicts a coordination of the ions to GABA and that this coordination inverts the rotational barrier observed for the isolated molecule. We also looked into the adequacy of CNDO for the study of this type of coordination and found several shortcomings in its predictions. The biological implications of these findings are discussed and a hypothesis on the role of a GABA-Ca2+ complex is presented.
    Additional Material: 3 Ill.
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  • 30
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    International Journal of Quantum Chemistry 19 (1981) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 31
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    International Journal of Quantum Chemistry 19 (1981), S. 493-500 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the frame of direct minimization of MC-SCF energy by an orthogonal transformation of the basis, a new procedure for iteratively solving the orbital equations is presented, in which the orthogonal matrix is calculated by the singular value and vector decomposition of a nonsymmetric matrix. The procedure is applied to the self-consistent electron pair theory and tested on LiH molecule. Convergence rate and numerical stability are found to be satisfactory.
    Additional Material: 1 Tab.
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  • 32
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method for basis set generation for SCF calculations is proposed. Using SCF orbitals and orbital energies obtained in the extended basis set the Fock operator can be expressed as its spectral resolution. The sum of differences between occupied orbital energies and corresponding eigenvalues obtained by the diagonalization of this operator in the new smaller basis set is a criterion of the quality of this new set. The present method consists of the minimization of this sum by changing the parameters that determine the new basis functions. An example of the optimization of the different Gaussian basis sets for the LiH molecule is described.
    Additional Material: 1 Tab.
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  • 33
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    International Journal of Quantum Chemistry 19 (1981), S. 637-648 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An SCF LCAO MO calculation on the methane-methane-methane system is presented, in order to analyze the deviation from pairwise additivity of the interaction energy. Three-body terms are shown to be remarkably similar to those of noble gas trimers both in magnitude and in their dependence on the geometrical arrangements of the three molecules.
    Additional Material: 5 Ill.
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  • 34
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    International Journal of Quantum Chemistry 19 (1981), S. 673-679 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Making use of different information measures, the Pauli exclusion principle and the first Hund rule were found to be related to a trend toward acquiring a maximum information content of the atoms and molecules, and more generally, for any fermion system. The bosons conversely always have a minimum (zero) information content with respect to the permutation symmetry of their wave functions. Some new interpretations of the Pauli principle are presented.
    Additional Material: 1 Tab.
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  • 35
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    International Journal of Quantum Chemistry 19 (1981), S. 681-691 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A first principles method based on an APW-k · p band structure calculation is derived in order to obtain the self-consistent eigenenergies, crystal potential, and electronic density. The simplicity and extensions of the method are discussed, including comparison with the results obtained by the use of the Chadi and Cohen special points technique.
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  • 36
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    International Journal of Quantum Chemistry 19 (1981), S. 719-720 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Ill.
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  • 37
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    International Journal of Quantum Chemistry 19 (1981), S. 729-734 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An analytic atomic active electron model potential adjusted to experimental single-particle energy levels is used to generate wave functions for the valence and excited states of O1+, F2+, Ne3+, Na4+, and Mg5+. Using these wave functions in conjunction with the Born approximation and the LS-coupling scheme, we calculate optical oscillator strengths for excitations from the 1s22s22p3(4S3/2) ground state. The results are compared to experimental data and other calculations. Systematic trends along the isoelectronic sequence are discussed.
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  • 38
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    International Journal of Quantum Chemistry 19 (1981), S. 763-769 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A coupled perturbation theory for the antisymmetrized product of separated geminals (APSG) approximation is derived. The variational principle for the APSG wave function in an external oscillating field is employed and a set of equations of the form analogous to the normal RPA is obtained. At this level the reduced resolvent in the form of a spectral expansion is written and it is used for the evaluation of the second-order properties.
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  • 39
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    International Journal of Quantum Chemistry 19 (1981), S. 805-819 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A charge density distribution study, based on ab initio SCF-6-31G wave functions, on the optimized geometry of 1,2-dioxethane indicates its high instability which results from (i) the high ring strain, (ii) the large amount of charge contained on the nonbonded sides of the oxygen nuclei, and (iii) the weak binding character of the charge density in the O—O bond region. The redistribution of the charge density when 1,2-dioxethane undergoes change in its nuclear configuration has been discussed. This redistribution of charge along the reaction path (the dissociation of 1,2-dioxethane to formaldehyde products) shows clearly the preceding nature of the electron cloud. The characteristic features of the charge density distribution of the two Hartree-Fock solutions to which the SCF procedure converges have been analyzed and discussed.
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  • 40
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    International Journal of Quantum Chemistry 19 (1981), S. 859-871 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By applying the projection operator method it is shown that the complicated Hamiltonian of a E ⊗ ∊ JT system with nonlinear coupling coefficients can be written in terms of two Hamiltonians which are simple to handle and transform according to irreducible representations E, A1, and A2 of C3v point group. A variational approach is then used to calculate the ground state energy, using the Hamiltonian that transforms according to E, as an explicit function of the linear and nonlinear coupling parameters. The energies calculated in the strong coupling limit are finally compared with the corresponding previously calculated energies.
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  • 41
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    International Journal of Quantum Chemistry 19 (1981), S. 901-906 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A coupled channel formulation for the static Stark effect on the hydrogen atom is used to obtain directly the complex resonance energies through an iterative matching procedure. The formulation makes use of a complex coordinate. This solves the initialization problem in a very simple way, since the boundary conditions can be those used for bound states. A comparison is made with the results of Reinhardt and collaborators who expand the complex rotated resonance wave function in a basis of integrable functions.
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  • 42
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    International Journal of Quantum Chemistry 20 (1981), S. 347-356 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Single chain and packing energy calculations have been made on polyglycine (threefold and fourfold helical structures) with interchain NH…O hydrogen bonds. In conformation A of polyglycine, in which the NH groups point away from the helix axis and the CO groups are nearer to the helix axis, the conformational energy is nearly the same for threefold and fourfold structures. However, the minimum energy conformation corresponds to a threefold structure of polyglycine with peptide configurations in conformation B in which the CO groups point away from the helix axis and NH groups are nearer to the helix axis. This structure is consistent with the polyglycine II x-ray diffraction data.
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  • 43
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    International Journal of Quantum Chemistry 20 (1981), S. 393-406 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ab initio MO and semiempirical multireference (MR) CI calculations were carried out to elucidate the energy differences between peroxy 1,4-diradical (DR) and 1,4-zwitterionic (ZWI) intermediates, which play crucial roles in photo-oxygenation reactions of nitrogen-activated C—C double bonds of enamines, indoles, and tryptamines. It is found that ZWI is more stable than DR in the case of electron-rich enamines. Protic solvents such as methanol are highly effective for the stabilization of ZWI by hydrogen bondings. From the present theoretical results, it is concluded that tryptophane undergoes the photooxidative cleavage reaction to give formylkynurenine under a specific condition, where polar solvents or catalysts sufficiently stabilize the ZWI state for the species.
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  • 44
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    International Journal of Quantum Chemistry 20 (1981), S. 461-478 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The present state in the chemistry of peptides and proteins capable of transporting ions across biological and model membranes have been reviewed. The mechanisms of action of peptide ionophores valinomycin and enniatin and also the channel-forming peptide gramicidin-A have been discussed on the basis of spatial structure and dynamic conformational properties of the compounds. Recent progress in the studies of bacteriorhodopsin, cholinergic receptor from postsynaptic membrane, and sodium channel from the excitable nerve membrane, the integral membrane proteins acting as proton or metal ion channel formers is also discussed.
    Additional Material: 13 Ill.
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  • 45
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    International Journal of Quantum Chemistry 20 (1981), S. 495-504 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The role of water structure around model membrane systems (e.g., liposomes) on phase transition of the lipid dipalmitoyl phosphatidylcholine was investigated. Water structure was altered by changing pH and by addition of solutes which are known breakers and makers of water structure. The structure makers broadened the zone of transition and changed the overall phase transition profile, while the main effect of structure breakers was to cause a shift in the transition temperature. The observed variation of Chapman transition temperature and broadening of zone of transition with varying pH is discussed in terms of altered water structure around the membrane-aqueous interface. Binding studies with the dye 1-anilino-8-napthalene sulfonate showed that structure makers or breakers did not bind to the liposome surface directly. Thus the structure makers and breakers act on the membranes perhaps by altering the water structure differentially. Possible associated mechanisms of action are discussed.
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  • 46
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    International Journal of Quantum Chemistry 20 (1981), S. 543-554 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Infrared spectroscopy has been employed to study possible base pair interactions, in nonpolar media, between O6-methylguanine and uracil, cytosine and adenine; and between derivatives of N4-hydroxycytosine and adenine. The association constants of O6-methylguanine with uracil, cytosine, and adenine are well below 1M-1, whereas those for interaction of 1-methyl-N4-methoxycytosine and its 5-methyl derivative with adenine are identical, K = 14M-1. The significance of the latter finding is discussed in relation to the conformation of the exocyclic N4-methoxy group. Quantum chemical calculations, with the aid of the perturbation method, were carried out for the interaction of O6-methylguanine with uracil, cytosine, and adenine, to establish the most energetically favoured configurations for interactions of the free bases, and of the same base pairs in the B form of DNA. The role of the conformation of the exocyclic  - OCH3 group in O6-methylguanine is discussed. The relevance of both the experimental and theoretical results to mutagenesis by O6-methylguanine and N4-hydroxycytosine is examined.
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  • 47
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    International Journal of Quantum Chemistry 20 (1981) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 48
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    International Journal of Quantum Chemistry 20 (1981), S. 843-859 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An ab initio LCAO SCF MO calculation was performed on planar Fe-porphine with a double zeta basis set consisting of 300 CGTO's. SCF wave functions of several states of Fe-porphine and its cation were obtained. The net charge of Fe is in the range of 1.39 to 1.53. The highest occupied orbital is ascertained to be a pure porphine π-MO, 1a1u. The calculated ionization potentials of the two highest occupied orbitals, 1a1u and 5a2u are 5.98 and 6.43 eV, respectively. They are in good agreement with experiments. The role of the porphine macrocycle on the oxidation of Fe is discussed in terms of gross atomic populations and with contour maps of the density difference.
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  • 49
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    International Journal of Quantum Chemistry 20 (1981), S. 887-889 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The limiting of the 〈r12-1〈/〈r1-1〈 ratio in the He sequence is critically examined at different levels of approximations leading to some interesting results.
    Additional Material: 1 Ill.
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  • 50
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    International Journal of Quantum Chemistry 20 (1981), S. 921-926 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Along the lines of previous work [S. Romano and E. Clementi, Gazz. Chim. Ital. 108, 319 (1978); Int. J. Quantum Chem. 14, 839 (1978); 17, 1007 (1980)], we carried out Monte Carlo simulation on serine-water clusters (the neutral molecule and two conformers of the zwitterion) surrounded by an appropriate dielectric continuum simulating the bulk solvent. Results for clusters in vacuo and in the dielectric continuum were compared; similarities and differences could be qualitatively interpreted as produced by competition among different factors.
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  • 51
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    International Journal of Quantum Chemistry 20 (1981), S. 933-949 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The self-consistent APW-k · p method is utilized to obtain the band structure of NaCl in the “muffin-tin” approximation. Qe have investigated the convergence of many intermediate results, e.g., crystalline potential, matrix elements of the momentum operator, and energy eigenvalues at the Γ point. The summation in reciprocal space, included in the definition of the matrix D of the theory, is performed by direct sum and also by a special points technique. For the convergence criteria used, the results converged after five iterations.
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  • 52
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    International Journal of Quantum Chemistry 20 (1981), S. 1073-1076 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Generalized oscillator strengths and integrated cross sections from threshold to 1 keV are calculated in the Born approximation for the electron impact excitation of O II.
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  • 53
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    International Journal of Quantum Chemistry 20 (1981), S. 1067-1071 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: One-electron properties may be evaluated by configuration interaction methods using analytical differentiation of the total energy with respect to an external perturbation parameter. Dipole moments are reported using such a method for CO and H2CO. Inclusion of single substitutions does not change calculated dipole moments appreciably with this method. The differences between this method and the direct evaluation of an expectation value are discussed.
    Additional Material: 1 Tab.
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  • 54
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We are engaged in research directed toward the development of compact and accurate correlation functions for many-electron systems. Our computational tool is the variational method in which the many-electron integrals are calculated by Monte Carlo using the fermion Metropolis sampling algorithm. That is, a many-fermion system is simulated by sampling the square of a correlated antisymmetric wave function. The principal advantage of the method is that interelectronic distance rij may be included directly in the wave function without adding significant computational complexity. In addition, other quantities of physical and theoretical interest such as electron correlation functions and representations of Coulomb and Fermi “holes” are very easily obtained. Preliminary results are reported for He, H2, and Li2.
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  • 55
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    International Journal of Quantum Chemistry 20 (1981), S. 1165-1177 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently proposed orthonormality constrained orbital optimization technique is operationally modified further by coupling it to a gradient biased method, namely the steepest descent procedure of McWeeny. The hybrid technique developed in this way is shown to have better convergence properties in closed and unrestricted open-shell calculations. The technique can be adapted to MCSCF procedures as well. The important role played by "orbital symmetries" in the operation of the method is analysed. Similarities and differences of the present method with the orthogonal gradient method are pointed out. Possible avenues of circumventing convergence difficulty that one may encounter in pathological cases, particularly in ab initio calculations involving extended basis set, are suggested.
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  • 56
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    International Journal of Quantum Chemistry 20 (1981), S. 1225-1231 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Interactions of catecholamines with acidic sites in the biophase are likely to be involved in the control of the receptors activity as well as in storage and transport mechanisms. In view of the importance of the phenomena a model study of ethanolamine-phosphate complexes was made. The electrostatic interaction energy surface was calculated in the charge density multipole expansion approximation with terms up to quadrupole. The consecutive minimal energy conformation shows the importance for the interaction with the biophase of the catechol ring steric and electronic relation to the side chain.
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  • 57
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    International Journal of Quantum Chemistry 20 (1981), S. 1273-1284 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Several useful “redefined zero-order Hamiltonian” variants of the Rayleigh-Schrödinger perturbation theory are derived by exploiting the freedom of choice for the orthogonality integral between zero- and first-order wavefunctions. It is found that the more common Hamiltonian repartitioning schemes follow quite naturally, as a consequence of certain consistency requirements. The strategy adopted may as well be employed to derive various newer and profitable zero-order Hamiltonians depending on the nature of the problems. This implication is strengthened by demonstrating the calculational success of one such derived scheme. Feenberg's “scale-changed” Hamiltonian approach is also reinterpreted in the present context.
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  • 58
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 59
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    International Journal of Quantum Chemistry 20 (1981), S. 1333-1334 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 60
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    International Journal of Quantum Chemistry 20 (1981), S. 1334-1335 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 61
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    International Journal of Quantum Chemistry 20 (1981), S. 63-71 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A simple method is presented for the construction of contracted Gaussian basis sets with little or no energy-optimization. The contraction coefficients are fitted by a least-squares procedure to the orbital expansion coefficients of the completely decontracted basis. The method is applied to the construction of minimum basis sets of first-row atoms from (6s, 3p) uncontracted atomic basis sets, and of [6s, 4p] contracted bases from (12s, 8p) uncontracted bases of second-row atoms. The results are better than using the expansion coefficients directly and are usually comparable to fully energy-optimized bases.The method can also be used to generate balanced atomic contraction coefficients from molecular calculations. This is shown with a (7s, 3p) and a (6s, 3p) basis, both contracted to a minimum basis. The contracted basis sets are employed in several small molecules, and the results are compared with calculations done with the decontracted bases and with contracted bases where the contraction coefficients were energy optimized in the molecules.
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  • 62
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    International Journal of Quantum Chemistry 20 (1981), S. 129-138 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Conformational properties of pyrazofurins, which were previously designated as pyrazomycins in both β- and α-anomeric forms, have been investigated by the PCILO method. The results indicate that the most preferred conformation for β anomer is anti-gg, while that for α anomer is syn-gg when intramolecular hydrogen bonding between sugar and the base is allowed. However, in the absence such hydrogen bonding, which mimicks the situation in aqueous solution, both β and α pyrazofurins show exactly similar preference for anti-gg conformation. The biological significance of this result has been discussed. Further the β anomer is energetically more favorable than the α anomer. This result is in agreement with the experimental observations, which indicate that β pyrazofurin is more populated than a pyrazofurin in aqueous solution at room temperature.
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  • 63
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    International Journal of Quantum Chemistry 20 (1981), S. 171-183 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An investigation is carried out of the influence of counterions bound to yeast tRNAPhe on the electrostatic potential and steric accessibility of this macromolecule. Two types of cations are considered, the Mg2+ ions located in the crystal of tRNAPhe, with their waters of hydration, and Na+ ions, which are positioned by theoretical estimation. Possible effects of the counterions on the chemical reactivity of tRNAPhe are pointed out.
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  • 64
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    International Journal of Quantum Chemistry 20 (1981), S. 231-239 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The hydrogen-bond geometry observed by neutron diffraction of 24 carbohydrate and 32 amino acid crystal structures is analyzed and compared. Of the 100 O—H———O bonds in the carbohydrate structures, 25 were three-centered (bifurcated). This bigamous behavior is rationalized in terms of the 25% greater number of acceptor oxygens than donor hydroxyls and the need to preserve the “cooperative effect.” The predominant hydrogen bonds in the amino acids are the zwitterion type , 64 out of a total of 145. Of these, 51 are three-centered. Again the rationale appears to be an equilization of donor and acceptor functions, since each carboxylate group generally accepts between four and six hydrogen bonds.
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  • 65
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    International Journal of Quantum Chemistry 20 (1981), S. 265-270 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dicarbonyl methylglyoxal reacts with the lysine residues of proteins to give brown colored products with a small oxygen-dependent free radical content. Electron spin resonance (ESR) experiments employing ethylene diamine as a model for protein lysine residues are reported. The prevention of imine formation between methylglyoxal and the amine models either by pretreatment of methylglyoxal with glutathione or by methylation of the amine led to brightly colored reaction products and a much higher radical content. From an analysis of the ESR spectra it is clear that the reactions between methylglyoxal and the simple model amines developed far beyond those in the protein-methylglyoxal systems. It is proposed that this difference is accounted for by the enormous steric effects of the proteins. The relevance of the observations to the “browning” reaction in foods is briefly discussed.
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  • 66
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    International Journal of Quantum Chemistry 20 (1981), S. 307-316 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Steady-state conductivity and dielectric measurements in the range of 10-5 Hz to 33 GHz are reported for bovine serum albumin and lysozyme as a function of hydration and NaCl content. The electrical properties are understandable in terms of the existence of charge carriers whose hopping-type transport process is directly influenced by the nature of the protein-water interaction. These mobile charges are considered to be protons originating from ionizable carboxylic groups.
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  • 67
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    International Journal of Quantum Chemistry 20 (1981), S. 347-357 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is outlined how the authors arrived at the existence problem of the intermediate states (IS) possibly appearing in bounded crystals with perfect bulk structure and of certain zig-zag states (ZZS) in almost periodic (even disordered) biopolymers. Earlier results are summarized and commented. An example is given for how to enhance the appearance probability of ISS. It is shown that within a narrow critical interval, the width of which is about the eighth of the average separation of the bulk states in the k space of the finite linear chains, any state becomes an his (almost IS), which is very similar to the IS and approaches it continuously. Estimating the effects of in-plane and in-terplane vibrations of stacked aromatic planar compounds on the delocalized π-electron structures, it is concluded that the valence modes have a strong effect on the in-plane π-electronic systems, but a very small one on the interplane π-electronic interactions. The longitudinal acoustical modes of finite polynucleotide DNA models and their root mean square amplitudes are estimated by the method of Peticolas. According to the results obtained, DNA-like and layered graphitelike systems seem to be the probable host systems of 1%. if they exist at all. The appropriateness of the recursion method is discussed to search for unusual electronic states and structures. Such studies are the first unsteady but exciting steps toward the construction of the molecular computers.
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  • 68
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    International Journal of Quantum Chemistry 20 (1981), S. 117-127 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio molecular orbital (MO) calculations on the model peptide, N-methylacetamide (NMA), protonated N-methylacetamide (p-NMA), and two natural dipeptides, glyclyglycine (Gly-Gly) and alanylalanine (Ala-Ala), are reported. Calculations at the STO-3G. 3-21G. and 4-31 G levels account for the predominance of the trans conformation in globular proteins. By use of p-NMA as a model precursor, the formation of the peptide bond is studied by the methods of molecular quantum mechanics. These calculations lead to the conclusion that the trans conformation should predominate, in agreement with the crystal structural data on globular proteins. In order to reduce the amount of computer time required for what are evidently the first ab-initio MO calculations on natural dipeptides, force-field calculations have been employed to obtain the conformational potential energy maps.
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  • 69
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio MODPOT/VRDDO/MERGE SCF calculations were carried out on 2,6-dimethyl-N-nitroso morpholine and on four isomers of α-hydroxy substituted derivatives. The NNO bond angle is found to be 1135°, in agreement with that observed in dimethyl nitrosamine. The two methyl groups are found to be most stable in the equatorial position. The axial position is found to be the most stable orientation for the α-hydroxy group in both the syn and the anti isomers. This is in agreement with the observed axial orientation of straight chain alkyl substituents at the α position in N-nitroso piperidine. An investigation was made on the effects of internal rotation in the parent compound. A 90° rotation about the N—N bond raises the energy ∼.0526 a.u. or ∼33 kcal/mol. In the 90° orientation, population analysis shows a decrease of ∼0.1 e in the gross atomic population (GAP) of the nitroso oxygen and in the total overlap population for the N—N bond. There is a corresponding increase of ∼0.05 e in the GAP on the amino nitrogen. The GAP on other heavy atoms and overlap in other bonds show little effect from internal rotation of the nitroso group. Electrostatic molecular potential energy contour maps indicate differences as a function of conformation.
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  • 70
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    International Journal of Quantum Chemistry 20 (1981), S. 201-219 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The FSGO molecular fragment technique has been employed to perform ab-initio SCF-MO calculations on morphine and naloxone in the free-base and N-protonated forms. Particular features of electronic structure which have been investigated are molecular-orbital (MO) density distributions, energies and ordering, as well as the correlation of specific orbitals between different molecular species. It has been found that high-energy occupied and low-energy unoccupied MOS are centered on the aromatic moiety of both drugs, enabling the ring to act either as an electron donor or as an acceptor in a charge-transfer interaction. Comparison of corresponding MOs in the free base and the acid cation of both morphine and naloxone demonstrates that the field of the cationic head causes a dramatic downward shift in orbital energies. Thus in the N-protonated drugs the acceptor capability of the benzene ring is greatly enhanced at the expense of its suitability as a donor. Furthermore, the allyl group of naloxone becomes highly activated as an electron acceptor through N-protonation. Investigation of the molecular electrostatic potential of the free-base species has revealed preferred avenues of approach for electrophilic and nucleophilic entities. However, the N-protonated species shows no regions of attraction for electrophiles. In both the free base and the acid cation, the vicinities of the nitrogen atom and the 3-hydroxy group are found to be favorably disposed for electrostatic interactions with receptor entities possessing the proper charge or polarity. Based on the findings with regard to electronic structure, a simple model has been suggested to explain the binding of morphine and naloxone at the opioid receptor.
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  • 71
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    International Journal of Quantum Chemistry 20 (1981), S. 257-264 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Hemoglobin-catalyzed hydroxylation of aniline may be taken as a model for similar reactions catalyzed by cytochrome P-450. Using ultraviolet-difference spectroscopy and 1H nuclear relaxation techniques, the binding of aniline to hemoglobin was examined. From the magnitude of paramagnetic effects of ferric iron on aniline protons, using the correlation time determined from the magnetic field dependence of water proton relaxation rates, aniline was found to bind to methemoglobins such that the aromatic protons are 8.5 ± 0.7 Å, away from the high-spin Fe3+. A mode of binding is proposed where the aniline molecule is hydrogen bonded to the distal histidine of hemoglobin.
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  • 72
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    International Journal of Quantum Chemistry 20 (1981), S. 277-285 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The solution conformations of two DNA octanucleotides, (GGAATTCC)·(GGAATTCC) and (AAAGCTTT)·(AAAGCTTT), have been investigated by theoretical calculations of NMR shifts. The calculations of proton chemical shifts have been made, taking into consideration the ring current effects and the atomic magnetic anisotropies of the bases. The computed shielding constants for B-DNA, alternating B-DNA, the Levitt propeller-twisted model and the Dickerson propeller-twist model (based on crystallographic data) have been compared with experimentally available shifts. For the (AAAGCTTT)·(AAAGCTTT) double helix the experimental data are available only for the exchangeable protons HN1 and HN3; thus a complete and detailed evaluation is impossible for this system. For (GGAATTCC)·(GGAATTCC) the results indicate that the A·T pairs are propeller twisted à la Levitt and Dickerson.
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  • 73
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    International Journal of Quantum Chemistry 20 (1981), S. 1285-1300 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The exponential transformation of the molecular orbitals, that has been previously used to achieve a process with a convergence of quadratic quality in SCF closed-shell calculations [J. Chem. Phys. 72, 1452 (1980)] has been extended to UHF determinantal wave functions built from different orbitals for different spins. Explicit formulas are given for the first and second derivatives of the energy to be varied. The method is illustrated by UHF calculations for systems described as standard singlets (Li2 and F2) or triplets (NH) at the RHF approximation level, as well as for CH, CH2, CH3 molecular fragments in their valence states.
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  • 74
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    International Journal of Quantum Chemistry 20 (1981), S. 1331-1332 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 75
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 76
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    International Journal of Quantum Chemistry 20 (1981), S. 1-47 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The development of a flexible intra- and intermolecular empirical potential function is described, which is designed for investigating the geometric structure of large molecular systems. The intramolecular components in the potential consist of harmonic bond stretching and angle bending terms, out-of-plane deformation terms, and torsional terms; intermolecular components include nonbonding, hydrogen bonding, and electrostatic terms. Bond lengths, angles, and torsional angles are predicted to within 2% of experiment, with most cases being within 1%. The suitability of the intermolecular potential was tested by crystal packing calculations; in all cases the results obtained were in excellent agreement with experiment.
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  • 77
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    International Journal of Quantum Chemistry 20 (1981), S. 109-116 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In an attempt to account for the selectivity displayed by valinomycin with respect to the binding of alkali metal cations, theoretical computations were performed of the interaction energies of this macrocyclic carrier with Na+, K+, Rb+, and Cs+. Subtracting from these interaction energies the corresponding dehydration energies of the cations yields a set of values of the energy balance, the ordering of which follows the ordering of the binding constants measured experimentally in polar solvents. The possibility of extending the procedure to the alkaline-earth cations Mg2+ and Ca2+ is examined.
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  • 78
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    International Journal of Quantum Chemistry 20 (1981), S. 81-93 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ascorbic acid enhances the free radical electron spin resonance signal obtained when methylamine interacts with methylglyoxal. Previous ab-initio calculations have shown that methylglyoxal and other ketoaldehydes may act as possible electron acceptors in Szent-Györgyi's theory of cancer. Ascorbic acid is also known to be involved in cancer.The ab-initio SCF method has been used to study the electronic structure of ascorbic acid and its metabolites. The bulk of the calculations involved the use of α-hydroxytetronic acid as a model for ascorbic acid, and related compounds as models for the ascorbyl radical and dehydroascorbic acid. Complete geometry optimizations by the force method were carried out for the model compounds, using an STO-3G basis set.To obtain an estimate of possible charge transfer involving these molecules, ab-initio “supermolecule” calculations were carried out using formamide and glyoxal. A large number of planar and stacked orientations were considered The anion acts as a substantial donor in many of the stacked conformations, but the charge transfer is rather small in all these systems.
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  • 79
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    International Journal of Quantum Chemistry 20 (1981), S. 139-148 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Aminoacyladenylates play a central part in both protein enzymatic and polypeptide prebiotic synthesis. Previous general studies on aminoacyladenylate conformations were extended to some aspects related to polypeptide prebiotic synthesis. Major conclusions drawn from these quantum mechanical PCILO calculations are: (1) In the presence of an ammonium group the glycylphosphate system forms a double seven-membered ring. This folded conformation possesses an important rigidity. This occurs in neutral or acidic solutions. It agrees with experimental observations showing that there is no polymerization in this case, in the absence of catalyst. Thus the catalytic part of montmorillonite clays, which can break the ring by compensation of the anionic and cationic charges, can be understood. (2) When the amine group remains in its neutral form (in basic solutions), numerous stereo structures are allowed for the glycylphosphate stem, among which a ring of weak stability. This is still in good agreement with the observation of polycondensation at high pH without catalyst. (3) The phosphate linking system is flexible enough to allow the extension of the polypeptide chain between the clay layers. This is in accordance with the mechanism proposed by Paecht-Horowitz in which the phosphate is locked on the edge of the montmorillonite sheet.
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  • 80
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    International Journal of Quantum Chemistry 20 (1981), S. 185-196 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Local coordinate systems are introduced into open sets of topological spaces, defined for the nuclear configuration space R of polyatomic nuclear systems. The open sets are directly related to common chemical concepts, such as chemical structure, reaction mechanism, and stability of reaction paths. A topological model of molecules and chemical reactions is a generalization of the geometrical model, and is particularly suitable to account for the nonrigid nature of chemical structures. The coordinate neighborhoods defined on R and on its submanifolds represent the extent and natural limits for partial analyses of multidimensional potential surfaces.
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  • 81
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    International Journal of Quantum Chemistry 20 (1981), S. 221-229 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The transfer of the central proton between the two NH3 units of (H3NHNH3)+ is studied using the 4-31 G basis set within the ab-initio Hartree-Fock formalism. Electron density difference maps are constructed which clearly indicate electronic redistributions which accompany the half-transfer of the proton from its equilibrium position (NH—N) to the midpoint of the hydrogen bond (N—H—N). The overall loss of electronic charge from the proton-accepting molecule originates in three distinct regions of space, while a density buildup of smaller magnitude is observed in a characteristic region centered about the N nucleus. Similar regions are noted for the proton-donating molecule, although the changes are reversed in sign. A partitioning of the total density changes into contributions from the various molecular orbitals demonstrates that the a1 orbitals are associated with density shifts along the H-bond axis. Changes in the N lone pairs are attributed chiefly to the (5a1,6a1) pair and are somewhat attenuated by opposite shifts involving the (3a1. 4a1) pair. Orbitals of e symmetry lead to polarizations of the NH bonds and density shifts perpendicular to the H-bond axis.
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  • 82
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    International Journal of Quantum Chemistry 20 (1981), S. 247-256 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To study the arrangement of substrates at the active site of creatine kinase, we have measured the paramagnetic effects of CrADP, an exchange-incrt paramagnetic analog of MgADP, on the nuclear spin lattice relaxation rates 1 /T1 of the protons of water and the protons and phosphorus nucleus of P-creatine in the presence and absence of rabbit muscle creatine kinase. Relaxivity titrations measuring the paramagnetic effect of CrADP on 1/T1 of water protons at several concentrations of the enzyme in the presence of P-creatine were used to study the binding of CrADP to the enzyme·P-creatine complex. The existence of a ternary enzyme·CrADP-P-creatine complex was confirmed by observing the paramagnetic effects of enzyme-bound CrADP on the 1 /T1 of the 31P nucleus and protons of P-creatine. From the magnitude of paramagnetic effects arising within the enzyme·CrADP·P-creatine complex, using the electron spin relaxation time estimated from the magnetic field dependence of 1 /T1 of fast exchanging water protons, a Cr3+-phosphorus distance of 6.0 Å, and Cr3+-proton distances of 11 and 12 Å, were obtained. These results imply the absence of a direct coordination of the phosphoryl group of P-creatine by the nucleotide-bound metal on creatine kinase but indicate proximity of enzyme-bound substrates and are consistent with van der Waals contact between a phosphoryl oxygen of P-creatine and the hydration sphere of the nucleotide-bound metal. Since the metal ion is coordinated to the γ-phosphoryl group of ATP on the enzyme, the overall migration of the phosphoryl group during phosphoryl transfer is ∼3 Å, toward the nucleotide-bound metal.Creatine kinase failed to catalyze phosphoryl transfer from P-creatine to CrADP as monitored by the disappearance of the 31P NMR signal of P-creatine in a solution containing CrADP, P-creatine and creatine kinase. The ability of an isomer of β,γ-bidentate CrATP to act as a partial substrate and our observation of the absence of phosphoryl transfer from P-creatine to CrADP indicate that metal ion coordination of the transferable phosphoryl group precedes phosphoryl transfer and is a requirement of the creatine kinase reaction.
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  • 83
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    International Journal of Quantum Chemistry 20 (1981), S. 317-329 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy of muscle contraction is generated by interactions between the proteins actin and myosin, acting together to hydrolyze a metaphosphate bond of ATP in the presence of Mg++, using the oxygen of a specific water molecule. The molecular setting for these events is described. A key feature is identified to be an attack by the water oxygen on one of the P—O—P bonds. The resulting hydrolysis liberates a phosphate group which is forcefully repelled from its original setting, perturbing metal ions and electron orbitals in the vicinity. The hypothesis is advanced that the accompanying perturbations excite an electron cloud to a hgher energy level, leading to a forceful expansion of the electron cloud. A model is presented representing the S-l head of myosin as being tilted with reference to the coordinates of the actin filament by the expansion of this cloud. This tilt represents a leverlike movement of the S-1 myosin head which is capable of powering the work of muscle contraction. Since the most important molecular participants in muscle contraction are present in all cells, the issues raised here are of very general biological significance.
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  • 84
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    International Journal of Quantum Chemistry 19 (1981), S. 515-519 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A self-consistent procedure for the Hückel theory, first indicated by Harris [J. Chem. Phys. 48, 4027 (1968)] has been fully developed. To avoid time consuming repeated orthogonal-nonorthogonal transformations and diagonalization of large matrices, a steepest descent technique has been suggested.
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  • 85
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    International Journal of Quantum Chemistry 19 (1981), S. 533-543 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Previous results on the hypervirial analysis of confined systems are extended. Periodic potentials are discussed and an efficient alternative way to solve the Mathieu equation is proposed.
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  • 86
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    International Journal of Quantum Chemistry 19 (1981), S. 781-791 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio and INDO LCBO-MO calculations are carried out on glyoxal, 1,3-butadiene, and acrolein in order to analyze the qualitative failure of INDO-like methods to describe conformation energies in these molecules. Following the method of Brunck and Weinhold for ethanelike systems we identify the principal bond-antibond interactions contributing to the glyoxal barrier, their dependence on dihedral angle and substituent, and their relative magnitudes as calculated by ab initio and INDO SCF-MO theory. We find a gross disparity in the INDO representation of π* interactions which leads to a grossly exaggerated estimate of the stability of gauche conformers in these molecules. These findings appear to have serious implications for the applicability of INDO-like theories to conformational problems in π-bonded molecules, including those of biological interest.
    Additional Material: 6 Tab.
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  • 87
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    International Journal of Quantum Chemistry 19 (1981), S. 833-845 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The localized MO's (LMO's) of 1,2-dioxethane in its ground state and along the dissociation reaction path (to formaldehyde products) are generated using Boys' criteria for localization. The total charge density in each LMO is partitioned into atomic and overlap densities and the binding or antibinding character of each LMO is discussed in terms of the forces exerted on the nuclei by these densities. The driving force for the dissociation reaction is shown to arise essentially from the atomic dipole forces exerted on the oxygen nuclei by their lone-pair LMO's. The characterization of a saddle point on the potential energy surface has been discussed in terms of the electrostatic equilibrium between forces exerted by the electron clouds “incomplete following” and “preceding.” The differences between the LMO's obtained from the two Hartree-Fock solutions to which the SCF procedure converges have been discussed.
    Additional Material: 5 Ill.
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  • 88
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    International Journal of Quantum Chemistry 19 (1981), S. 711-718 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Comparison of the molecular Q-optimized and molecular gradient optimized carbon basis sets for CH4 showed that molecular Q optimization is an excellent substitute to the more expensive molecular gradient optimization. The parameter Q of the Q optimization is related to the population (i.e., net charge) on the atom.
    Additional Material: 3 Ill.
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  • 89
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    International Journal of Quantum Chemistry 19 (1981), S. 745-753 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Exact wave functions and eigenenergy relations are obtained for a biwell potential as a function of interwell displacement and single well parameters. The proliferation of energies is shown explicitly as the wells are brought into close proximity. The model is compared with the opaque division-wall model. These results find important application in laser and nuclear physics.
    Additional Material: 3 Ill.
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  • 90
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    International Journal of Quantum Chemistry 19 (1981), S. 771-779 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio STO-3G geometry-optimized calculations have been performed on methyl, ethyl, and isopropyl cyanides and isocyanides, and the cations formed on abstraction of an α-hydride ion. Stabilization energies of the cations and cyanide-isocyanide isomerization energies have been calculated and correlated with structural features and population analyses.
    Additional Material: 6 Tab.
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  • 91
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    International Journal of Quantum Chemistry 19 (1981), S. 33-42 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The analysis of nonstationary processes, taking place in exciton systems in consequence of the nonconservation of the number of elementary excitations, is presented and it is pointed out to a new possibility of light-energy capturing which exists in ecological systems due to the nonconservation of excitons. It is shown that, due to the nonconservation, the one-dimensional molecular chain is able to capture permanently the light energy of the order of 50 keV to 5 MeV. A part of the captured energy is expected to have a role in internal bioprocesses. It is also shown that the system is a seat where the processes of continuous creations and annihilations of pairs of excitons having opposite momenta take place with a probability of the order of 10-4 to 10-2. Further investigations would allow to identify biological phenomena caused by those processes.
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  • 92
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    International Journal of Quantum Chemistry 19 (1981), S. 113-130 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Semilocal pseudopotentials have been determined for first-row (Li to Ne), second row (Na to Ar), and third-row atoms (K, Ca). Core-valence correlation is included by adjusting the pseudopotentials to experimental energies of ions with a single valence electron. Correlation within the valence shell is taken into account by using the spin-density functional formalism. The approximations involved in this approach are tested for atomic ionization energies as well as binding energies of monohydrides and alkali diatomics, agreement with experiment is usually satisfactory, but in certain applications density functionals should be already included in the fitting of the local part of the pseudopotential. In addition, 3s/3p and 3s/2p basis sets (for first and second row, respectively), designed for use in connection with our pseudopotentials, are given; it is shown that they yield reasonable results for both SCF and correlation energies.
    Additional Material: 3 Ill.
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  • 93
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    International Journal of Quantum Chemistry 19 (1981), S. 171-177 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio STO-3G geometries and relative energies for uracil (U) and the tautomer 4-hydroxyuracil (U*) were obtained with the HONDO program utilizing the rapidly convergent method of Murtaugh and Sargent for geometry optimization. ΔE for U⇄U* is 6.61 kcal/mole. The reaction field continuum model for solvent effect indicates a preferential stabilization of U* by 1.0 kcal/mole. The calculated gas phase Kt and solution Kt for U⇄U* are 1.44×10-5 and 1.3×10-4, respectively.
    Additional Material: 1 Ill.
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  • 94
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    International Journal of Quantum Chemistry 19 (1981), S. 237-249 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Procedures for the construction of the eigenvector matrix and the spectrum of 4 × 4 real and symmetric matrices are given. The Lie algebra of the group O(4)† is used as well as the relation to O(3)†. Perturbations are analyzed in terms of the group parameters.
    Additional Material: 2 Tab.
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  • 95
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    International Journal of Quantum Chemistry 19 (1981), S. 283-291 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper we present a simple method within the coupled Hartree-Fock framework to calculate the 1s2s 3S state of helium and heliumlike ions. The results are in very good agreement with those obtained by the use of multiterm correlated wave functions. Some interesting observations associated with the wave function are presented.
    Additional Material: 4 Ill.
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  • 96
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    International Journal of Quantum Chemistry 19 (1981), S. 1197-1201 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio computations have been performed on the compounds AlH2BH4 and AlH2C3H5 in order to achieve a better understanding of the peculiar characteristics of the metal to ligand bond. Our results suggest a bidentate coordination for the tetrahydroborate complex and an η3 coordination for the allyl complex. Due to the nonrigidity of the BH4- and allyl complexes, possible interconversion paths between different coordination modes have also been analyzed.
    Additional Material: 2 Ill.
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  • 97
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    International Journal of Quantum Chemistry 19 (1981), S. 1003-1010 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The point of view of chemical engineers concerning the possible contributions of fundamental research to their work is briefly illustrated by reference to catalyst design. Specific questions on which the author is working are mentioned. The growing importance of zeolites and their challenge for fundamental research is also pointed out.
    Additional Material: 5 Ill.
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  • 98
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    International Journal of Quantum Chemistry 19 (1981), S. 1031-1041 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is the intent of this article to illustrate certain aspects of the present status of electrochemistry as regards theoretical interpretations. First a brief critical review of classical electrochemical kinetics is given and the directions are indicated in which improvement in theoretical treatments are hardly needed. Next, experimental results on the cathodic discharge of tin in darkness and in light are presented, and a tentative explanation based on the assumption that adatoms (and not adions) diffuse on the electrode surface as a result of stabilization by light is presented.
    Additional Material: 3 Ill.
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  • 99
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    International Journal of Quantum Chemistry 19 (1981), S. 379-381 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The time-independent Schrödinger equation for a one-dimensional square step potential with impenetrable walls was solved to prove the suitability as an oscillator potential. The mathematical structure of the eigenvalue conditions and the number of eigenstates within one potential step are discussed.
    Additional Material: 1 Ill.
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  • 100
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    International Journal of Quantum Chemistry 19 (1981), S. 427-439 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For a Coulomb system of particles of charge e, it has previously been shown that the indirect part of the repulsive Coulomb energy (exchange plus correlation energy) has a lower bound of the form -Ce2/3∫ρ(x)4/3 dx, where ρ is the single particle charge density. Here we lower the constant C from the 8.52 previously given to 1.68. We also show that the best possible C is greater than 1.23.
    Type of Medium: Electronic Resource
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