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  • 101
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 58 (1996), S. 539-540 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 102
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 59 (1996), S. 3-6 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Irregularities in the connection of the high- and low-density forms of the Perdew-Zunger correlation energy functional lead to computational difficulties that are removed by a new parametrization. These parametrizations and a number of other correlation functionals are compared and discussed. © 1996 John Wiley & Sons, Inc.
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  • 103
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 59 (1996), S. 7-14 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this article, an attempt was made to develop an activation process model. The average energy of the translational motion of the atoms, taking part in the elementary activation process and being in the thermodynamic equilibrium with thermal radiation, was obtained using the quantum canonical Gibbs distribution and the model principles of elementary activation. The degeneracy and exclusion of some excited vibrational levels were taken into consideration, the result being a strong dependence of the probability of surmounting the activation barrier on the behavior of the excited vibrational states of the quantum subsystems. As an application of the development model, the formulas of the preexponential factor for solid-state atomic diffusivity and first-order chemical reaction rate constants were derived. Quantitative analysis of the atomic diffusion in solids in the framework of our model has made it possible to describe the diffusion processes in metals, covalent semiconductors, as well as diffusion anomalies, connected with the “nonclassical” behavior of the empirical Arrhenius dependence. A possible physical essence of a kinetic compensation effect is discussed. It was shown that compensation may be caused by only changing the degeneracy of the vibrational levels of the quantum subsystems. © 1996 John Wiley & Sons, Inc.
    Additional Material: 7 Ill.
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  • 104
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Nonlocal density functional calculations and a semiempirical modified Born method for computing free energies of hydration were used to calculate the electrode potentials for a series of nitroimidazoles to a mean accuracy of about 80 mV. The density functional calculations used the nonlocal Becke '88 functional for exchange and either the nonlocal Lee-Yang-Parr or the local Vosko-Wilk-Nusair functionals for correlation and were performed at the HF/3-21G geometry. The most suitable geometry for these calculations was determined from a survey of various semiempirical, Hartree-Fock (HF) and density functional methods, with a variety of basis sets. The HF/3-21G method was found to yield a very favorable compromise between speed and accuracy in the determination of the geometry of 2-nitroimidazole, but the small basis set density functional calculations performed very badly. Density functional atom-optimized basis sets were found to give better overall results than traditional Pople-type basis sets. The free energy of hydration calculations employed the AM1 SM2 method. Both the gas-phase energies and the free energies of hydration made a significant contribution to the computed electrode potential. Indeed, an inverse relationship was found between the gas-phase electron affinity and the difference in free energy of hydration between the neutral nitroimidazole and its radical anion. The protocol established here may be useful for investigating novel bioreductive agents. © 1996 John Wiley & Sons, Inc.
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  • 105
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 59 (1996), S. 167-172 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Molecular orbital calculations are reported on the structure and electronic properties of both 2-nitrophenylcyanate and 2-nitrophenylthiocyanate using both the semiempirical AM1 and PM3 methods and the ab initio 3-21G and 6-31G** basis sets. The resulting structures are compared with crystallographic data where available. The marked difference in biological activity observed between the two molecules appears to be attributable to large differences in their electronic properties rather than to any geometric factors. © 1996 John Wiley & Sons, Inc.
    Additional Material: 1 Ill.
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  • 106
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Theoretical calculations of the potential energy surface (PES) for the [NH3 + HCl] system are presented using several standard ab initio methods such as Hartree-Fock (HF), second-order Møller-Plesset perturbation theory (MP2), coupled cluster (CC), complete active space self-consistent-field (CASSCF), density functional theory (DFT), and less traditional ab initio approaches such as Dirac-Fock four-components and the use of effective Hamiltonian techniques, such as the recently proposed K functional. All calculations predict a single minimum for the complex, corresponding to a hydrogen-bonded structure, confirming early studies. The dynamical and nondynamical contributions to the correlation energy are discussed for different cuts of the PES, involving different N(SINGLE BOND)Cl distances. The complex has also been characterized by performing a full geometry optimization within the HF and DFT schemes; with the latter we have performed also the vibrational analysis. The predicted binding energies and infrared (IR) spectrum are compared with other theoretical and experimental results. For the gas phase, we propose a binding energy of -5.3 ± 0.5 kcal/mol, thus revising the experimental value of -8.0 ± 2.8 kcal/mol; for the minimum, the predicted N(SINGLE BOND)H and H(SINGLE BOND)Cl distances are 5.91 ± 0.05 and 2.46 ± 0.05 a.u., respectively. When the computation is done with approximate inclusion of solvent effects (Onsager reaction field), the minimum is shifted and it corresponds to the ion pair NH+4·Cl- structure, similar to Mulliken's outer complex. Since the first ab initio computation for the NH4Cl complex is the pioneer work in 1967 by E. Clementi, the present work provides us with an opportunity to comment on some aspects of the evolution in computational chemistry, particularly for energy determinations. We have concluded our comments with the invitation to use four-components Fock-Dirac for molecules both with high and low Z atoms, rather than the traditional Hartree-Fock and related methods. In other words, we are of the opinion that the time is ready in quantum chemistry to switch from the Schrödinger to the Dirac representation, due to new developments in computer hardware and software. In addition, the use of effective Hamiltonians, like the recently proposed “K functional,” seems to deserve attention, because of their computational simplicity and physical reliability in predicting correlation corrections. © 1996 John Wiley & Sons, Inc.
    Additional Material: 8 Ill.
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  • 107
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    International Journal of Quantum Chemistry 59 (1996), S. 379-390 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a novel approach to molecular shape representation, molecular electronic density functions are treated as 3D hypersurfaces in a 4D Euclidean space, spanned by the three spatial coordinates and an electronic density threshold variable. The general objects resulting from this approach are topological spheres with handles, modeling the electron density. Based on this model, a new, simple representation of molecular topology of electron density is proposed, using a tree describing the evolution of topological spheres with handles as function of a varying density threshold. The vertices of the tree are characterized by nonnegative integers (the genea of the topological objects). This representation is compared to earlier, detailed 3D topological descriptions of molecular shape as well as to the more conventional molecular network (bond skeleton) representation. A variety of relevant topological equivalence relations of molecules are discussed and a new, global, molecular similarity measure is proposed. © 1996 John Wiley & Sons, Inc.
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  • 108
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    International Journal of Quantum Chemistry 59 (1996), S. 349-378 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An ab initio procedure for the calculation of atomic and molecular electronic wave functions, the Optimized-Basis-Set Multi-Configuration Spin-Coupled (OBS-MCSC) method, is generalized by introducing a separate linear combination of spin functions for each configuration, turning it into the OBS-GMCSC method. The ability to use a second-order minimization procedure in the computation of the wave function is maintained through appropriate generalization of the analytic expressions for the first and second derivatives of the energy with respect to the optimization parameters, as is the optional inclusion among the latter of the basis-function exponential parameters. The generalization, a variational improvement of the wave function, strengthens the connection with classical VB theory, of which the method can now be considered an optimized-orbitals variant, while maintaining the link with single-configuration Spin-Coupled theory, of which it may still be considered a multiconfiguration extension. The method can also be viewed as a nonorthogonal variant of the MCSCF approach. To demonstrate its practical feasibility and usefulness, the OBS-GMCSC method is applied to a study of the electronic structure and electron affinity of boron. © 1996 John Wiley & Sons, Inc.
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  • 109
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    International Journal of Quantum Chemistry 59 (1996), S. 503-503 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 110
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 59 (1996), S. 495-501 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two ab initio (ROHF and MP2), one local (SVWN), four hybrid (BHandH, BHandHLYP, Becke3LYP, and Becke3P86), and two nonlocal (BLYP and BP86) density functional theory (DFT) methods are used for calculating the dissociation energies of molecules that contain H(SINGLE BOND)O, O(SINGLE BOND)O and O(SINGLE BOND)C bonds. The sensitivity to the basis set of the prediction of bond dissociation energies with DFT methods was tested with Becke3LYP on the H(SINGLE BOND)O dissociation energy of water. The 6-31 + G(d) methods are chosen as the smallest basis set which produces reasonable results. The calculated values for all other ab initio and DFT methods were performed with these basis sets and then compared with the experimental data. The suitability of DFT methods for computing reliable bond dissociation energies of oxygen containing molecules is discussed. © 1996 John Wiley & Sons, Inc.
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  • 111
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    International Journal of Quantum Chemistry 59 (1996), S. 505-505 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 112
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    International Journal of Quantum Chemistry 60 (1996), S. 131-139 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this study the work performed at our laboratory is outlined by emphasizing the leading role that the idea of average has in our research. © 1996 John Wiley & Sons, Inc.
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  • 113
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    International Journal of Quantum Chemistry 60 (1996), S. 141-146 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A quantitative reference for comparing molecules (and sites of molecules) likely to exchange electrons with a molecular or crystalline partner can be obtained by coupling such molecules to a model electron reservoir with a continuous energy spectrum. In this study the required procedure is defined and mathematically formulated, within the standard orbital scheme. The reservoir is modeled as an infinite linear chain of atoms with one atomic orbital whose coupling is larger than the largest half-bandwidth of the molecules to be compared, coupled by a suitable bond parameter to a specific site of the molecule. The resulting level broadening and local density of states (DOS) are determined using Dyson's equation to get a tractable expansion of the Green function of the molecule-reservoir system. An example of application and a brief discussion of the dependence of the results on the type of Hamiltonian utilized are given. © 1996 John Wiley & Sons, Inc.
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  • 114
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    International Journal of Quantum Chemistry 60 (1996), S. 147-156 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A technique for the configuration interaction (CI) study of many-electron systems is developed based on Rumer spin-coupling scheme for the antisymmetrized configuration state functions (CSF). Incorporating a new graphical approach, the primitive configurations have been generated in blocks of definite ionocities to permit ready association of possible spin functions with each of the primitive configurations. Simple as well as extended Hubard model Hamiltonians have been studied to test the efficiency of the method. Procedures have been incorporated to calculate various correlation functions using the spin-adapted CSFs without invoking explicit expansions in terms of slater determinants. © 1996 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
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  • 115
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    International Journal of Quantum Chemistry 60 (1996), S. 167-171 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Multireference perturbation theory is examined in connection with the two partitions in the Møller - Plesset and Epstein - Nesbet schemes. The implementation of an efficient diagrammatic technique is described and two examples of application (diazene and the Cr2 molecule), involving large variational spaces, are provided. © 1996 John Wiley & Sons, Inc.
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  • 116
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    International Journal of Quantum Chemistry 60 (1996), S. 173-183 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method of performing ab initio calculations of the electronic structure of fragments within a larger molecule is reported. The method uses the self-consistent group formalism of McWeeny together with the systematic use of a hybrid atomic orbital basis. The mutual compatibility of these two ideas is stressed and results are given for model calculations on fragments in saturated hydrocarbon chains and rings. © 1996 John Wiley & Sons, Inc.
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  • 117
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    International Journal of Quantum Chemistry 60 (1996), S. 157-166 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Roothaan equations have been modified to compute molecular interactions between weakly bonded systems at the SCF level of theory without the basis set superposition error (BSSE). The increase in complication with respect to the usual SCF algorithm is negligible. Calculation of the SCF energy on large systems, such as nucleic acid pairs, does not pose any computational problem. At the same time, it is shown that a modest change in basis-set quality from 3-21G to 6-31G changes the binding energy by about 50% when computed according to standard SCF “supermolecule” techniques, while remaining practically constant when computed without introducing BSSE. Bader analysis shows that the amount of charge transferred between the interacting units is of the same order of magnitude when performed on standard SCF wave functions and those computed using the new method. The large difference between the corresponding computed energies is thus ascribed to the BSSE. © 1996 John Wiley & Sons, Inc.
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  • 118
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    International Journal of Quantum Chemistry 60 (1996), S. 213-224 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Formulas are derived for the density matrices belonging to an n-particle wave function built on the basis of single-center explicitly correlated Gaussian basis functions. An explicit formula for the first-order density matrix, P(r1, r′1), is obtained for computing the probability distribution P(r1, r1). Other formulas are derived for matrix elements of the first-order density operator P on a basis of single-particle Gaussian orbitals so that natural orbitals (NOs) can be expressed in such a basis. The method is illustrated for the case of the ground state of the helium atom using the 16-term (geminal) wave function by Singer and Longstaff (E = -2.90233 au) and a set of even-tempered Gaussian orbitals. The resulting natural orbitals compare favorably with natural orbitals from Cl expansions. The method is also applied to our 20 term (trimal) wave function for the ground state of dipositronium (E = -0.51560 au). Analysis is made in this case for pair correlation functions of both the electron-electron and the positron-electron pairs; results include the radial distributions of these pairs and their relative angular momentum. © 1996 John Wiley & Sons, Inc.
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  • 119
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    International Journal of Quantum Chemistry 60 (1996), S. 1165-1178 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We examine the state of the art of the solvation procedure called the polarizable continuum model (PCM), focusing our attention on the basic properties: energy of the solute, solvation energy, and their derivatives with respect to nuclear coordinates. The PCM method is based on the use of an effective solute Hamiltonian, where the solute-solvent potential is described in terms of continuous response functions with boundary conditions given in terms of the solute cavity surface. This exposition is mainly based on recent progress, a large part of which is still in press. The new procedures are quite effective, at the ab initio quantum mechanical level, but cannot be applied to very large solutes for the limitations of computer hardware. We introduce then other methods, presented here for the first time, which make possible the classical calculation of the solvation energy also for very large solutes (a few thousand atoms). The strategy outlined here regards a new method to define cavity surfaces (supplemented with analytical definitions of its partition in tesserae) and of their derivatives, combined with a fast noniterative method to compute solvation energy. Finally, we discuss the introduction of this procedure in hybrid quantum mechanical/molecular mechanics descriptions of large solutes (enzymes), where the quantum description is limited to the reacting portion of the enzyme. © 1996 John Wiley & Sons, Inc.
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  • 120
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    International Journal of Quantum Chemistry 60 (1996), S. 1249-1256 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Avoided crossing diagram parameters for the radical exchange reaction and the concerted exchange of two and three bonds are computed by using the approximated valence bond method, which is a nonorthogonal configuration interaction (CI) semiempirical method among the valence bond configuration functions. Here, each valence bond configuration function is a spin-adapted combination of Slater determinants constructed from the Heitler-London or Coulson-Fischer hybrid orbitals. Atomic orbitals integrals are evaluated using semiempirical philosophy, and these provide considerable saving of computer time compared with the most standard ab initio multistructure valence bond methods. The results indicate that the approximate valence bond method is capable of yielding reasonable results for the avoided crossing diagram parameters. These results also indicate that the diagram gap (G) is the decisive factor for the stability of symmetric clusters, Xn, although no clear correlation between the gap G and the geometric distortion is found for different values of n. © 1996 John Wiley & Sons, Inc.
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  • 121
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    International Journal of Quantum Chemistry 60 (1996), S. 1271-1277 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A practical procedure (FUERZA) to obtain internal force constants from Cartesian second derivatives (Hessians) is presented and discussed. It allows a systematic analysis of pair atomic interactions in a molecular system, and it is fully invariant to the choice of internal coordinates of the molecule. Force constants for bonds or for any pair of atoms in general are defined by means of the eigenanalysis of their pair interaction matrix. Force constants for the angles are obtained from their corresponding two-pair interaction matrices of the two bonds or distances forming the angle, and the dihedral force constants are similarly obtained using their corresponding three-pair interaction matrices. © 1996 John Wiley & Sons, Inc.
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  • 122
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    International Journal of Quantum Chemistry 60 (1996), S. 1291-1301 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a computational scheme to study the dynamics of many-electrons in molecular systems by wavepackets method. Several approaches to calculation of nonlinear optical properties for molecules under time-independent or time-dependent external electric fields are presented. Some simple examples of one-dimensional two- or three-electron systems are demonstrated concretely. Implications of these results are discussed in relation to the validity of the many electron wavepackets (MEWP) method. © 1996 John Wiley & Sons, Inc.
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  • 123
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    International Journal of Quantum Chemistry 60 (1996), S. 1303-1310 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A stochastic path-integral (SPI) technique for chemical reaction dynamics is explored. It is shown that this technique enables the direct computation of the transition amplitude with a finite space-time range, by generating a set of classical paths subject to simultaneous stochastic differential equations. The numerical values of the Boltzmann matrix elements for a harmonic potential are in good agreement with the analytical ones. Within the quantum transition state theory, the flux-flux autocorrelation function is also evaluated at 630 K for the H + H2 exchange reaction and is found to give a satisfactory agreement with the previous studies. To appraise the influence of the dimensionality, both one-dimensional Eckart potential and a full three-dimensional (3D) Liu-Siegbahn-Truhlar-Horowitz (LSTH) potential calculations have been performed. The calculated values of the Boltzmann matrix elements for the colinear and the full 3D cases are found to deviate slightly from each other in the lower temperature range. The 3D thermal rate constant is in very good agreement with the previous one. © 1996 John Wiley & Sons, Inc.
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  • 124
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    International Journal of Quantum Chemistry 60 (1996), S. 1403-1407 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In density functional theory (DFT) the exchange-correlation energy has to be approximated. One of the most widely used approximations to the correlation component, the Lee(SINGLEBOND)Yang(SINGLEBOND)Parr (LYP) functional does not obey nonuniform scaling requirements. We propose a modifying function that makes this functional satisfy nonuniform scaling constraints. As a result, two modified LYP functionals are suggested. One of them, optimized in a preliminary way, exhibits some properties better than the original LYP functional. This implies that nonuniform scaling requirements convey very important information and all approximate functionals in DFT should be made to satisfy these requirements. Our modifying factor could be used to improve the nonuniform scaling properties not only of Ec LYP [n] but also of most functionals which do not obey these conditions. © 1996 John Wiley & Sons, Inc.
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  • 125
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    International Journal of Quantum Chemistry 60 (1996), S. 1457-1468 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Kohn-Sham eigenvalues were formally introduced into density functional theory as Lagrange multipliers in the implementation of the minimum principle for the total energy of a many-electron system. No general results are available concerning the physical significance of these one-electron eigenvalues (with the exception of the highest occupied level, which equals the Fermi energy). Recent ab initio calculations of dynamical response in metals make explicit use of the Kohn-Sham band structure, and associated wave functions, through the use of spectral representations. This opens up the possibility of examining the significance of the eigenvalues at an “empirical” level, i.e., through direct comparison with the results of spectroscopic measurements. A particularly interesting example is afforded by new inelastic x-ray scattering experiments on A1. For a special wave vector transfer, qo ≈ 1.5kF, the measured spectrum provides a direct mapping of the Kohn-Sham noninteracting spectrum. For a range of wave vectors about qo, the bare Kohn-Sham spectrum still reproduces all the main features of the measurements; this suggests that, in this metal, the Kohn-Sham eigenvalues are good approximations to the quasiparticle energies. We also discuss the interplay between Kohn-Sham bands and the energy of the “anomalous” plasmon in Cs, whose dispersion bears a signature of the excited-state band structure. Finally, and in a more formal framework, we outline the results of a first-principles comparison between quasiparticle amplitudes and Kohn-Sham wave functions at a jellium surface; the latter turn out to be excellent approximations to the former. © 1996 John Wiley & Sons, Inc.
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  • 126
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    International Journal of Quantum Chemistry 60 (1996), S. 1487-1497 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Minimal basis-set (STO-3G) direct and Fourier space restricted Hartree-Fock (RHF) calculations on the infinite regular (metallic) and alternating chains of lithium molecules, (-Li2-)x, are reported to illustrate two advantages of the Fourier representation method: accurate calculation of all lattice summations and faithful reproduction of the genuine features of the RHF approach for metallic cases. © 1996 John Wiley & Sons, Inc.
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  • 127
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    International Journal of Quantum Chemistry 60 (1996), S. 1505-1514 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dependence of X-ray photoionization spectra on structural characteristics is assessed by one-particle Green's function calculations on the nearly isomeric adamantane, 1,4-dimethyl bicyclo [2,2,2] octane and 1,1,4,4-tetramethyl cyclohexane compounds. These calculations are carried out using the quasi-particle approximation and the diagonal 2ph-TDA renormalization scheme for the self-energy. The simulated spectra fingerprint remarkably the atomic connectivity from their inner valence part, through the interplay of energy degeneracies and the influence of torsional strains on electron binding energies. The boundary region between the inner and outer valence bands provides also specific signatures for molecular characteristics pertaining to conformational questions, namely the enforced conversion from the chair to the boat form of the cyclohexane units generating these compounds. © 1996 John Wiley & Sons, Inc.
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  • 128
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    International Journal of Quantum Chemistry 60 (1996), S. 1525-1536 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The local self-consistent field (LSCF) method which allows full SCF computations on a fragment of very long molecular systems represented by a classical force field has been adapted to the description of nonmetallic crystals. The periodicity of the network is achieved by modifying self-consistently the basic parameters of the classical subsystem (charges, geometric parameters) along the SCF iterative scheme. The method is tested on α-cristobalite. The parametrization of the quantum classical junction, achieved by localized bond orbitals has been performed with the help of a fragment located in the bulk. The stability of the method with respect to the size of the fragment and the size of the crystalline sample appears to be very good. The properties of fully hydroxylated (010) surface are corrected described. Modeling of water adsorption on the ideal surface as well as on two kinds of surface defects gives rise to very reasonable results with an absorption energies of ca 10 kcal/mol which are close to the upper limit of the experimental data. This preliminary study appears to be quite encouraging regarding the possibilities of using this method, which can be considered as an extension of the embedded cluster approach to covalent solids. Many applications to surface chemical reactivity studies can be imagined. © 1996 John Wiley & Sons, Inc.
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  • 129
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    International Journal of Quantum Chemistry 60 (1996), S. 1567-1576 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The contribution reports results of ongoing computations of various cage structures differing from the well-known buckminsterfullerene in the number of carbon atoms (C80) in their coordination or in the types of rings involved (C59). The computations have supplied a complete description of the seven isolated-pentagon-rule (IPR) isomers of C80 (i.e., a system not yet observed) at the semiempirical AM1 and SAM1 levels; their energetics was also evaluated at ab initio Hartree-Fock level in small basis sets. The ground-state structure of the system possesses a D5d symmetry, but at supposed synthetic conditions a structure of D2 symmetry is the most populated, i.e. temperature represents an important factor in the stability relationships. One of the IPR isomers exhibits an Ih topological symmetry, but it undergoes a Jahn-Teller distortion and its symmetry is actually reduced to D2. The C59 serves as an example of odd-numbered carbon clusters, and new rules are reported for the pentagon/hexagon pattern in the odd clusters, yielding a variable number of the pentagons. Moreover, other rings are considered and the computed ground state of the system in fact contains an eight-membered ring (while the next lowest species exhibits a nine-membered ring). Their relative stabilities are not very sensitive to temperature. Altogether 19 isomers of C59 are treated at the AM1 level. In contrast to even-numbered fullerenes, with odd fullerenes the cages cannot be built from three-coordinated carbon atoms only. Hence, we have to allow for two- or even four-coordinated atoms. For example, if we consider one two-coordinated carbon atom (and the rest three-coordinated) the number of pentagons drops to 10. If we allow for just one four-coordinated atom, the number of pentagons changes to 14. Let the number of two-coordinated carbon atoms be p, and the number of four-coordinated q. If we still allow only for pentagons and hexagons, it holds for the number of pentagons n5 = -2p + 2q + 12. © 1996 John Wiley & Sons, Inc.
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  • 130
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    International Journal of Quantum Chemistry 60 (1996), S. 1709-1718 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Various nitrogen clusters, Nx, are selected for the present theoretical study. The number of nitrogen atoms chosen in this work varies from x = 8 to x = 32. PM3, which is known as one of the best semiempirical methods, is selected for the self-consistent molecular orbital calculations. The geometrical optimization, vibrational frequencies, and thermochemical computations are all involved for various types of molecular nitrogen clusters. The results show that all Nx's belong to the category of stable high-energy compounds. Comparison of average bond energy and delocalization energy of all cases reveals that N20(Ih symmetry) is the most stable molecule among all the nitrogen clusters studied. In addition, our results show five-membered rings are the most favored in the structures of nitrogen clusters (Nx). © 1996 John Wiley & Sons, Inc.
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  • 131
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    International Journal of Quantum Chemistry 60 (1996), S. 1213-1213 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 132
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    International Journal of Quantum Chemistry 60 (1996), S. 1745-1764 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Interaction between the guanine-cytosine base pair and the episulfonium form of sulfur mustard (HD+) or the aziridinium form of nitrogen mustard (HN2+) was studied using the ab initio LCAO-MO method at the HF/6-31G level. The alkylation mechanism on the guanine N7 was analyzed by using a supermolecular modeling. Our stereostructural results associated with the molecular electrostatic potentials and highest occupied/lowest unoccupied molecular orbital (HOMO(SINGLEBOND)LUMO) properties show that in vacuum the alkylation of the N7 of guanine by HD+ in the agressive episulfonium form is a direct process without a transition state and of which the pathway is determined. Our study shows that interaction of guanine with the aziridinium form of HN2+ necessitates a transition state for the N7 alkylation route. When the N7 guanine alkylation by HD+ or HN2+ is achieved, about half of a positive charge moves from the alkylator toward the guanine in both cases. © 1996 John Wiley & Sons, Inc.
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  • 133
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    International Journal of Quantum Chemistry 60 (1996), S. 1797-1804 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A formalism is presented for quantifying the similarity between any two molecules. The chemical descriptor used for comparison is the molecular electrostatic potential at the van der Waals surface. Thus, both the spatial properties of a molecule and its chemical features are captured in this approach. For molecules that are geometrically alike, the most useful similarity measure stems from orienting the two species so that their physical surfaces are aligned as well as possible, without regard to chemical patterns. After this alignment is achieved, a single measure sensitive to the spatial distribution of the electrostatic potential is used to rank the electronic similarity. Molecular similarity measures are applied to the enzyme systems AMP deaminase and AMP nucleosidase in order to understand quantitatively why their respective transition-state inhibitors bind more tightly than do their substrates. © 1996 John Wiley & Sons, Inc.
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  • 134
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A procedure is described which leads to experimentally based models for the transition-state structures of enzyme-catalyzed reactions. Substrates for an enzymic reaction are synthesized with isotopically enriched atoms at every position in which bonding changes are anticipated at the enzyme-enforced transition state. Kinetic isotope effects are measured for each atomic substitution and corrected for diminution of the isotope effects from nonchemical steps of the enzymic mechanism. A truncated geometric model of the transition-state structure is fitted to the kinetic isotope effects using bond-energy bond-order vibrational analysis. Full molecularity is restored to the transition state while maintaining the geometry of the bonds which define the transition state. Electronic wave functions are calculated for the substrate and the transition-state molecules. The molecular electrostatic potential energies are defined for the van der Waal surfaces of substrate and transition state and displayed in numerical and color-coded constructs. The electronic differences between substrate and transition state reveal characteristics of the transition state which permits the extraordinary binding affinity of enzyme-transition state interactions. The information has been used to characterize several enzymatic transition states and to design powerfully inhibitory transition-state analogues. Enzymatic examples are provided for the reactions catalyzed by AMP deaminase, nucleoside hydrolase, purine nucleoside phosphorylase, and for several bacterial toxins. The results demonstrate that the combination of experimental, classical, and quantum chemistry approaches is capable of providing reliable transition-state structures and sufficient information to permit the design of transition-state inhibitors. © 1996 John Wiley & Sons, Inc.
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  • 135
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    International Journal of Quantum Chemistry 60 (1996), S. 1851-1863 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using the information on the interatomic separations in a molecule, one can construct structural invariants that are the components of a molecular profile. The entries in the profile are derived by averaging different powers of the interatomic separations, suitably normalized so that the increasing powers do not dominate the sequence. Although only a few hundreds of structures have been so analyzed, no two different chemical structures were found to be characterized by the same sequences. A critical test for the conjecture that molecular profiles are unique is to consider structurally closely related systems that are very similar and have several similar properties. In this contribution we investigated the cuboctahedron and the accompanying polyhedron obtained by rotating half of the cuboctahedron against the other half, resulting in the so-called twist cutoctahedron. We show that even this pair of closely related structures has different profiles. We have also examined the generalized molecular profiles obtained by inserting n additional points along each edge of the polyhedra. The convergence of the profiles as n increases is discussed. It appears thus that these generalized molecular profiles, called line profiles or bond profiles, are likely to lead to a unique characterization of structures in which not only the geometry of atoms is recorded but also the geometry of the connectivity of the structure. © 1996 John Wiley & Sons, Inc.
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  • 136
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    International Journal of Quantum Chemistry 57 (1996), S. 183-198 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The virial field V(r) is defined by the local statement of the quantum mechanical virial theorem, as the trace of the Schrödinger stress tensor. This field defines the electronic potential energy density of an electron at r and integrates to minus twice the electronic kinetic energy. It is the most short-ranged description possible of the local electronic potential energy and it exhibits the same transferable behavior over bounded regions of real space (corresponding to the functional groups of chemistry) as does ρ(r). This article establishes a structural homeomorphism between -V(r) and ρ(r), showing that the two fields are homeomorphic over all of the nuclear configuration space. The stable or unstable structure defined by the gradient vector field Δρ(r; X) for any configuration X of the nuclei can be placed in a one-to-one correspondence with a structure defined by the field -ΔV(r; X′). In particular, a molecular graph for ρ(r) defining a molecular structure is mirrored by a corresponding virial graph for V(r) and the lines of maximum density linking bonded nuclei in the former field are matched by a set of lines of maximally negative potential energy density in the latter. The homeomorphism is also geometrically faithful, an equilibrium geometry in general, exhibiting equivalent structures in the two fields. The demonstration that the virial field, whose integrated value equals twice the total energy, is essentially just a locally scaled version of the electron density is suggestive of possible new approaches in density functional theory. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 207-212 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Bond function basis sets combined with the counterpoise procedure are used to calculate the molecular dissociation energies De of 24 diatomic molecules and ions. The calculated values of De are compared to those without bond functions and/or counterpoise corrections. The equilibrium bond lengths re and harmonic frequencies οe are also calculated for a few selected molecules. The calculations at the fourth-order Møller-Plesset approximation (MP4) have consistently recovered about 95-99% of the experimental values for De; compared to as low as 75% without use of bond functions. The calculated values of re are typically 0.01 Å larger than the experimental values, and the calculated values of οe are over 95% of the experimental values. © 1996 John Wiley & Sons, Inc.
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  • 138
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    International Journal of Quantum Chemistry 57 (1996), S. 199-205 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This study demonstrates the use of uneven atomic basis sets for ab initio calculations of NMR shielding in the localized orbital/local origin (LORG) approach with norbornenone as the test case. We distinguish between locally dense sets (extended basis on target atom only) and locally saturated sets (extended bases on target atom and atoms in its first bonding sphere), using 6-311G** and 6-31G sets to describe the high and low level of function sets. It is shown that the use of these uneven sets can simulate high basis set level calculations of shieldings for 1H and for all the 13C nuclei in this molecule and, hence, allows quite accurate ab initio calculations of shielding properties of these nuclei in large molecules using relatively modest computational facilities. The shielding of the double-bonded 17O nucleus is apparently sensitive to basis-set quality beyond the first bonding sphere. © 1996 John Wiley & Sons, Inc.
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  • 139
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    International Journal of Quantum Chemistry 57 (1996), S. 213-217 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The comparison of local nonlocal and hybrid DFT methods with RHF, MP2, CCSD, and CPF ab initio methods in generating geometries and relative energies of cis- and trans-difluorodiazete, SVWN, BLYP, BP86, BECKE3LYP, and BECKE3P86 DFT methods with 6-311 + g(2d) and 6-311 + + g(3df) basis sets. The geometries generated with RHF ab initio models are quite different from experimental values and energy evaluation prefers the wrong isomer. The hybrid methods give superior geometries while energies evaluated with nonlocal DFT methods are better than the one obtained with MP2 or CCDS ab initio methods. The results suggest DFT as the method of choice of studying similar systems. © 1996 John Wiley & Sons, Inc.
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  • 140
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    International Journal of Quantum Chemistry 57 (1996), S. 401-411 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The properties of Sturmian basis sets in d-dimensional direct space and d-dimensional momentum space are reviewed, as well as the relationship between hydrogenlike Sturmians and hyperspherical harmonics. The kernel of the reciprocal-space Schrödinger equation is expanded in terms of Strumian basis sets. This expansion allows Shibuya and Wulfman's treatment of many-center Coulomb potentials to be extended to many-center potentials of a general form, and the method is also extended to the calculation of crystal orbitals and band structures. © 1996 John Wiley & Sons, Inc.
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  • 141
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    International Journal of Quantum Chemistry 57 (1996), S. 391-399 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The wave function of a system may be expanded in terms of eigenfunctions of the N -1 electron Hamiltonian times one-particle functions known as generalized overlap amplitudes (GOAS). The one-electron operator whose eigenfunctions are the GOAS is presented, without using an energy-dependent term as in the one-particle Green function or propagator approach. It is shown that this operator and the extended Koopmans' theorem (EKT) one-electron operator are of similar form, but perform complementary roles. The GOA operator begins with one-electron densities and total energies of N -1 electron states to generate the two-matrix and total energy of an N-electron state. The EKT operator begins with the two-matrix of an N-electron state to generate one-electron densities and ionization potentials (or approximations thereto) for N -1 electron states. However, whereas the EKT orbitals must be linearly independent, no such restriction applies to the GOAS. © 1996 John Wiley & Sons, Inc.
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  • 142
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    International Journal of Quantum Chemistry 57 (1996), S. 413-422 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We applied general quantum mechanical ideas in order to establish the form of the many-electron wave functions suitable for analysis of catalytic processes. This led us to the conclusion that the relevant wave functions for the electrons of the catalytic complexes must be taken as superpositions of the antisymmetrized products of the wave functions of electrons in excited and ionized states of the catalyst and reactants. With use of the trial wave function for the electrons of the catalytic complex in such a form, it becomes possible to construct model potential energy surfaces of catalytic reactions as a superposition of the potential energy surfaces of the reactants in different electronic states. We formulate the criteria which when satisfied make it possible to implement a catalytic version of a desired chemical transformation. We also propose an approach to the explanation of the frequently observed correlations between the catalytic activity and other physical properties of a catalyst. © 1996 John Wiley & Sons, Inc.
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  • 143
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    International Journal of Quantum Chemistry 57 (1996), S. 423-428 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A certain analytical model of E is proposed to satisfy the prerequisite exact density functional theory (DFT) formulas such as μ = ∂E/∂N = -(I + A)/2 and 2η = ∂2E/∂N2 = I -A. © 1996 John Wiley & Sons, Inc.
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  • 144
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    International Journal of Quantum Chemistry 57 (1996), S. 429-440 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To provide a potential energy surface (PES) for a three-dimensional vibrational model of the dissociation dynamics of ammonia in the à state, accurate MRD-CI computations were carried out for a wide range of displacements in the out-of-plane and in-plane bending coordinates along the H(bond)NH2 dissociation coordinate. Some characteristic features of the Ã-state PES, such as the height and position of the barrier to dissociation and the dependence of the PES on the out-of-plane angle, differ noticeably from earlier work on this system. The values for the height of the barrier computed from the MRD-CI extrapolation, full CI, and secular equation estimates are 0.38, 0.34, and 0.32 eV, respectively. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 449-452 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The purpose of the present work was twofold: First, a lower bound of Gálvez and Dehesa to the Thomas-Fermi kinetic energy was investigated for the two-electron systems H-, He, Li+, B3+, O6+, Ne8+, and Mg12+. Second, a conjecture of Lieb, relating the kinetic energy to the Thomas-Fermi kinetic energy, was examined. For both investigations, the analytical approximations of Benesch to the radial electron densities of the two-electron systems were used. These approximations are based on the explicitly correlated (Hylleraas-type) 20 variational parameter wave functions of Hart and Herzberg. © 1996 John Wiley & Sons, Inc.
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  • 146
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    International Journal of Quantum Chemistry 57 (1996), S. 441-448 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The 17O and 2H quadrupole coupling constants of rovibrational levels of 17O1H+, 17O2H+, and 16O2H+ in their X3Σ- state have been calculated from molecular wave functions that explicitly describe nuclear motion. The 17O quadrupole coupling is predicted to be strong and its vibrational dependence differs from that known for other nuclei A in the first-row hydrides AH or AH+. The deuterium coupling in 17O2H+ and 16O2H+ is found to be weak and its behavior is similar to that of other first-row hydrides. The change with rotational excitation is unimportant. The quadrupole hyperfine patterns of 17O2H+ in its ground state are dominated by the strong oxygen coupling. © 1996 John Wiley & Sons, Inc.
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  • 147
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    International Journal of Quantum Chemistry 57 (1996), S. 453-463 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An approach for a space-separated calculation of the wave function in the valence and core regions of a molecule is proposed. As the first step, the calculation of the orbitals (or two-component spinors in the relativistic case) in the valence region by the effective core potential (ECP) method is performed. Then, it is followed by a restoration of orbitals (four-component spinors) expanded on spherical harmonics in the core regions of heavy atoms. Theoretical questions of the variational calculation of the molecular orbitals are considered in some core region limited by a sphere. Inclusion from the electronic cloud outside this region is reduced by the necessity of taking into account the orthonormality and boundary conditions together with an effective external field in respect to the selected core region.This method may be used for calculation of matrix elements of operators that are singular near nuclei (P, T-odd interactions, hyperfine structure, etc.). A substantial computational saving can be reached because the method enables, by the most optimal way, to combine the advantages of two well-developed approaches: molecular ECP calculations in the Gaussian basis set and one-center numerical atomic calculations with an external field. It is especially important when the relativistic effects are taken into account. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 471-479 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Four-component relativistic and nonrelativistic molecular orbital calculations were performed for the covalent paramagnetic complex [Ir(CN)5]3-, employing the self-consistent discrete variational method, in the framework of density functional theory. Relativistic effects on the electronic structure and chemical bonding are discussed by comparison of relativistic and nonrelativistic one-electron energy levels, populations, and bond orders. The influence of relativistic effects on calculated absorption energies of the electronic spectrum is briefly assessed. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 465-470 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The results of semiempirical calculations on the heterofullerence C24N4 and its boron-nitrogen analogs B6N10C12 (the smallest CBN ball) are presented in accordance with considerations of chemical bondings and geometries. The structures and relative properties of the 28-atom cages, C28, C24N4, and B6N10C12, were investigated using semiempirical methods contained in the MOPAC program. C24N4 and B6N10C12 have Td and C3 symmetry, respectively. B6N10C12 has four geometric isomers, and their optimized structures were determined. The ionization energies, vibrational frequencies, IR intensities, and various thermodynamic properties (including entropy and heat capacity) for C24N4 and B6N10C12 were calculated by the MNDO method. The evidence suggests that a B6N10C12 cage is more stable than that of C24N4. Possible experimental methods to prepare B6N10C12 are also proposed. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 481-491 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Insertion of CO2 into the transition metal-hydride bond of [RhIIIH2(PH3)3]+, CuIH(PH3)2, and RhIH(PH3)3 was theoretically investigated with ab initio MO/MP4, SD-CI, and CCD methods. The geometries of reactants, transition states (TS), and products were optimized at the Hartree-Fock level, and then MP4, SD-CI, and CCD calculations were performed on those optimized structures. The TS of the CO2 insertion into the CuI(bond)H bond is the most reactantlike, while the TS of the CO2 insertion into the RhIII(bond)H bond is the most productlike. The activation energy (Ea) and the reaction energy (ΔE) were calculated to be 6.5 and -33.5 kcal/mol for the CO2 insertion into the Cu1(bond)H bond, 21.2 and -7.0 kcal/mol for the CO2 insertion into the Rh1(bond)H bond, and 51.3 and -1.1 kcal/mol for the Rh111(bond)H bond at the SD-CI level, where negative ΔE represents exothermicity. These results are discussed in terms of the M(bond)H bond energy and the trans-influence of the hydride ligand. © 1996 John Wiley & Sons, Inc.
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  • 151
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations at the MP2/6-31G*//HF/3-21G* level have been carried out to study Diels-Alder reactions of 2-substituted-1,3-dienes with sulfur dioxide. The CH ··· O electrostatic interaction detected in some of the transition structures located could be decisive in the control of the exo/endo stereoselectivity of this type of reaction. © 1996 John Wiley & Sons, Inc.
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  • 152
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    International Journal of Quantum Chemistry 57 (1996) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 153
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    International Journal of Quantum Chemistry 57 (1996), S. 501-518 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently proposed pair population scheme is investigated for ab initio SCF and spin-coupled wave functions. All the required expressions are rederived, in very compact form, and efficient computational schemes are presented for their evaluation. As representative examples of different types of bonding, pair populations and related quantities are examined for H2, LiH, BeH, CH4, H2O, and B2H6. Various “effective valencies” are also considered. © 1996 John Wiley & Sons, Inc.
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  • 154
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    International Journal of Quantum Chemistry 57 (1996), S. 519-532 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: On the grounds of results from quantum chemical calculations, we introduce spin-catalysis as a new concept, and classify different types of chemical reactions according to this concept. We propose a general definition of spin-catalysis as phenomena in which chemical reactions are promoted by substances which assist in overcoming spin-prohibition or in which the activation barrier is lowered through spin uncoupling induced by a paramagnetic catalyst. A number of known phenomena fall into this definition and can be classified according to two main categories: (1) spin-orbit coupling induced and (2) paramagnetic-exchange induced spin-catalysis. Other types of spin-catalysis are also discussed: (3) processes with participation of substances which assist in (a) photochemical and (b) thermal or electrochemical generation of active particles by energy and - by electron transfer [radicals, diradicals, O2(1Δg), etc.], reacting further without spin-prohibition: (4) processes induced by an external magnetic field. Processes (3) and (4) are quite general and well known; their inclusion in the spin-catalysis classification does not introduce any new findings for the chemical kinetics, but the general features, which unite them with the important catalytic processes of the first two types, serve as a useful guide in catalysis theory. Few models of spin-catalytic processes have been simulated for the purpose of illuminating the principles of spin-catalysis; the cis-trans isomerization of ethylene catalyzed by molecular oxygen, the external heavy atom effect in ethylene photochemistry, and some others. © 1996 John Wiley & Sons, Inc.
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  • 155
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    International Journal of Quantum Chemistry 57 (1996), S. 533-542 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The performance of numerical basis sets in relation to Gaussian basis sets is examined, by studying 20 small sulfur-containing molecules. The results of geometry optimization calculations are reported for each molecule using both density functional and Hartee-Fock methods. In comparison with experimental data, it is shown that the use of numerical bases tend to overestimate structural parameters, particularly bond lengths, and, in most cases, more than Gaussian basis sets. It is also shown that the use of a larger Gaussian basis set in DFT calculations has the effect of reducing bond lengths. © 1996 John Wiley & Sons, Inc.
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  • 156
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    International Journal of Quantum Chemistry 57 (1996), S. 543-550 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Vibrational population factors for the nascent Penning ions HD+ (v′)(… He) and energy of the corresponding Penning electrons are calculated for the ionization event He(23S)(SINGLEBOND)HD(v′ = 0) → [He … HD+(v′)] + e- taking place at a range of the He*(SINGLEBOND)HD separations and orientations accessible by the system during thermal energy collisions. The vibrational population factors are obtained from the local widths of the He(23S)(SINGLEBOND)HD(v′ = 0, N) state with respect to autoionization to HD+(… He) in its v′th vibrational level. The initial overall picture of the autoionization event is consistent with the He(23S)(SINGLEBOND)H2(v′ = 0) one. On the other hand, the vibrational population factors are different from the approximate average populations used in initial model theoretical considerations about the Penning processes in the system. Variation of the calculated considerations about the Penning processes in the system. Variation of the calculated quantities with changes in the He*(SINGLEBOND)HD separations and orientations is found to be smooth enough to guarantee that the present data might form a sound basis for construction of analytical representations of the corresponding 2D surfaces and for future study of the dynamics of the collision system. © 1996 John Wiley & Sons, Inc.
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  • 157
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    International Journal of Quantum Chemistry 57 (1996), S. 575-585 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Spectroscopic properties of all the electronic states of KRb dissociating into 4s(K) + 5s(Rb), 4s(K) + 5p(Rb), 4p(K) + 5s(Rb), and 4s(K) + 4d(Rb) and some higher-lying excited states are studied with ab initio calculations. Spectroscopic constants, dipole moments, and the nature of the electronic wave functions for these states are reported. Intensities for the singlet-singlet and triplet-triplet transitions are theoretically calculated from the potential energy curves and the transition dipole moments. © 1996 John Wiley & Sons, Inc.
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  • 158
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    International Journal of Quantum Chemistry 57 (1996), S. 559-566 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present ab initio calculations carried out in the framework of the G2 theory on the singlet and triplet potential energy surfaces corresponding to the gas-phase between CH+2 and PO. The global minimum of both potential energy surfaces is a cyclic singlet-state cation. Oxygen attachment of PO to CH+2 in a triplet configuration is accompanied by a P(SINGLEBOND)O bond fission, with the result that the corresponding global minimum is an ion-dipole complex between P+(3P) and formaldehyde. This is also consistent with the fact that our results predict the formation of formaldehyde to be highly exothermic, either as a neutral or as radical cation. Both charge-transfer processes yielding CH2(3B1) or CH2(1A1) are also exothermic. The formation of other carbon and oxygen containing species are endothermic. © 1996 John Wiley & Sons, Inc.
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  • 159
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    International Journal of Quantum Chemistry 57 (1996), S. 551-557 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The benzene … Ar2 cluster was studied by constant energy molecular dynamics simulations using the ab initio intermolecular potential for the benzene … Ar interaction. The relative population of the energetically less favorable one-sided structure was found to be higher that the population of the global minimum (two-sided structure). The preference of the energetically less stable structure was explained by the entropy effect. The thermodynamic functions (entropy, internal energy, and free energy) were calculated independently by integration of the canonical distribution function. © 1996 John Wiley & Sons, Inc.
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  • 160
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    International Journal of Quantum Chemistry 57 (1996), S. 567-573 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A study of the coronene - coronene association using different interaction potentials based on an atom-atom pair potential proposed by Fraga has been performed. The interaction potentials employed differ in the way the electrostatic and/or dispersion contributions are computed. The influence of both contributions on the geometries predicted for the coronene dimer is discussed in order to analyze the effectiveness of the different interaction potentials. The stationary points found in each interaction energy hypersurface are characterized by calculating the Hessian eigenvalues. Results are discussed in the light of those previously reported for the benzene dimer. Stacked-displaced structures are suggested to be the preferred conformations for the coronene - coronene association. © 1996 John Wiley & Sons, Inc.
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  • 161
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    International Journal of Quantum Chemistry 57 (1996), S. 587-594 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The outer-valence ionization potentials, low-lying electronically excited states, and 1J(CC) nuclear spin-spin coupling constants of bicyclobutane, tricyclopentane, tricyclohexane, and octabisvalene have been investigated at the ab initio level by using the outer-valence Green function (OVGF), random-phase approximation (RPA), and equations-of-motions (EOM) approaches, which incorporate the main dynamical correlation effects. A comprehensive theoretical prediction of these spectroscopic observables is presented, which shows several interesting aspects stemming from the unique electronic structure of the bridge bond. © 1996 John Wiley & Sons, Inc.
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  • 162
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    International Journal of Quantum Chemistry 57 (1996), S. 611-623 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A full theoretical treatment of electron capture processes using ab initio configuration interaction methods within, according to the collision energy range concerned, a semiclassical or a quantal collisional formalism including translation effects has been developed recently. An application for collisions involving boron, an important impurity in fusion reactors, is presented on examples of the ground state: B3+(1s2) + He, B4+(1s) + H, and the metastable ion B3+(1s2s) + H reactions. © 1996 John Wiley & Sons, Inc.
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  • 163
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    International Journal of Quantum Chemistry 57 (1996), S. 641-653 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To elucidate the physical origin of relativistic changes of molecular properties, exact theorems, perturbation theory, and Hartree-Fock-Slater-Pauli calculations are exploited. The relativistic molecular virial theorem offers insight into the relativistic and nonrelativistic, kinetic, and potential energy contributions to the bond energy. In general, there exist two contributions to the relativistic correction of a molecular property: the relativistic change at the nonrelativistic equilibrium geometry and the change of the nonrelativistic property due to the relativistic change of the equilibrium geometry. Sometimes the first and sometimes the second contribution is the dominant one. Accurate numerical results for H+2-like systems are obtained using direct relativistic double perturbation theory. In some cases, near-degenerate perturbation theory is mandatory. Relativistic changes of chemical bond energies are often proportional to the density change in the K-shell when the bond is formed. Relativistic corrections to many properties (and also to the 1s2-correlation energy) are often proportional to Z2α2. © 1996 John Wiley & Sons, Inc.
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  • 164
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Three specific model systems, HCo(CO)4, Na · NH3, and NO/Pt(111), are used to extend the strategy of vibrationally mediated photodissociations of organometallics, via small clusters of metal atoms and small molecules, to photodesorption of small molecules from metal surfaces. All systems and strategies are similar with respect to breaking metal-ligand bonds by means of infrared IR and visible or ultraviolet UV photons. Specific properties of the systems call, however, for different implementations of the overall tools. In the case of HCo(CO)4, traditional continuous wave (CW) IR + UV 2-photon excitations enhance the rates of HCo bond homolysis. A detailed analysis discovers three effects which result from Franck-Condon transitions in the domains of vibrationally excited wave functions: (i) ultrafast (≈ 20 fs) bond rupture starting from the steeply repulsive wall of the potential energy surface of the excited singlet state; (ii) efficient fast (≈ 200 fs) predissociation via tunneling through neighboring potential barriers; and (iii) decreasing contributions from indirect dissociations via slow (≈ 46 ps) intersystem crossing induced by spin-orbit coupling. In the case of Na · NH3, we suggest a vibrationally mediated pump-and-dump scheme, similar to the strategy of Tannor, Rice, and Kosloff, with proper control of the delay (ca. 70 fs) between ultrashort (ca. 30 fs) pump-and-dump laser pulses. Ultimately, this strategy shifts specific lobes of the vibrationally excited wave packets into a steeply repulsive wall of the potential energy surface of the electronic ground state, with subsequent fast (ca. 100 fs) ruptures of the NA(SINGLEBOND)NH3 bond, similar to effect (i) for HCo(CO)4. Finally, we show that a similar, vibrationally mediated pump-and-dump scheme may also support photodesorption of NO from Pt(111), with an intrinsic relaxation step for the electronically excited system NO/Pt(111) instead of active pump-and-dump control for Na · NH3. All strategies are simulated by fast Fourier transform propagations of representative wave packets on two potential energy surfaces. © 1996 John Wiley & Sons, Inc.
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  • 165
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    International Journal of Quantum Chemistry 57 (1996), S. 625-640 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A proposal for the classification of molecular open-shell states is presented. This classification can be applied to most standard situations, well described within the Born-Oppenheimer and nonrelativistic approximations. The main idea is to consider electronic configurations important in the CI-type expansion of the state wave function at the equilibrium conformation, as well as along any generalized coordinate describing a physically realistic conformational transformation, in particular, the system separation in the state considered. The states are generally divided into single- and multireference ones. On the basis of the conformational dependence of the multireference character, the states are further divided into locally, asympotically, globally, and strongly multiconfigurational ones. The proposed classification is an attempt at a unifying view of such well-known phenomena, like avoided crossings, Woodward-Hoffman forbidden processes, conical intersections, Jahn-Teller stabilizations, and van der Waals minima. A comparison with the classification of Kutzelnigg and Smith [Int. J. Quantum Chem. 2, 531 (1968)], based on an analysis of natural orbital occupation numbers, is made wherever possible. © 1996 John Wiley & Sons, Inc.
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  • 166
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    International Journal of Quantum Chemistry 57 (1996), S. 655-662 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using density functional theory with Becke's gradient correction for the exchange part and Vanderbilt's ultrasoft pseudopotentials, we investigated [Be(H2O)n]2+ clusters for n = 1 and 3. A new scheme implemented with the Car-Parrinello method is used, upon which no periodic boundary conditions are imposed so that isolated and possibly charged molecules can also be treated dynamically in a plane-wave basis. Harmonic vibrational frequencies are obtained via a fit of the molecular dynamics trajectory in terms of harmonic oscillators, for which we use a fragmentation scheme to analyze complex spectra. Based on this combination of techniques, we find good agreement with data from SCF calculations and correlated methods. © 1996 John Wiley & Sons, Inc.
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  • 167
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    International Journal of Quantum Chemistry 57 (1996), S. 663-671 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Many of the important properties of transition-metal complexes depend on the low-energy excitation spectrum formed by d-electrons of the central transition-metal atom. The spectra of this type are usually fit to the well-known crystal field theory or to the angular overlap model. The result of the fitting is a set of parameters which are considered as characteristics of the electronic structure of the complex such as strength of the ligand field or types and extent of metal-ligand bonding. We present here a short account of the effective Hamiltonian method recently developed to calculate the splitting of the d-levels by the ligands and the resulting d-d spectra of transition-metal complexes together with some results of its application to the mixed-ligand complexes with the general formula ML4Z2, where M = V, Co, Ni; L = H2O, NH3, Py; and Z = H2O, NCS-,C -l. Particular attention is paid to the V(H2O)4Cl2 and Co(H2O)4Cl2 compounds. The former seems to have tetragonal structure, whereas for the latter, our method predicts a spatially degenerate ground state for the tetragonal arrangement of the ligands. That must lead to the Jahn-Teller distortion, which is actually observed. © 1996 John Wiley & Sons, Inc.
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  • 168
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    International Journal of Quantum Chemistry 57 (1996), S. 673-682 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Three isoelectronic reactions, proton transfer (PT), hydrogen abstraction (HA), and electron transfer (ET), of NH+3 with NH,3 H2O, and HF have been studied using ab initio molecular orbital calculations. For the reaction of NH+3 + H2O, the energy of the transition state (TS) is higher than that of the reactants. This is consistent with the experimental observation that the rate constant is less than the average dipole orientation (ADO) rate constant. It seems reasonable that the reaction rate for the reaction NH+3 + H2O would hardly depend on the v2 mode of NH+3 at least for low-lying excited states (Eint≤ 0.714 eV) of the v2 mode, because the v2 mode contributes mainly to the normal mode orthogonal to the reaction coordinate at the TS. This is consistent with experimental observation. A similar prediction can be made for the NH+3 + HF reaction. The electron-transfer processes for the HA reactions have been examined in terms of the intrinsic reaction coordinate (IRC). The order of reactivity with NH+3 is NH3 〉 H2O 〉 HF. It is found that the degree of the electron transfer and the reactivity are correlated with the absolute hardness (η) of NH3, H2O, and HF. This is in accord with the softness as the chemical reactivity index in the density functional theory. © 1996 John Wiley & Sons, Inc.
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  • 169
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    International Journal of Quantum Chemistry 57 (1996), S. 683-695 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A review is given of many-body perturbation methods, particularly in the all-order and coupled-cluster forms. Relativistic many-body schemes are analyzed in terms of one- and two-photon potentials, derived by means of QED. A complete second-order (nonradiative) calculation for He-like ions is presented, including repeated Breit interactions as well as the effects of retardation and of negative-energy states, but omitting the Lamb shift. Numerical results of some Lamb-shift calculations are also given. From the analysis, conclusions can be drawn concerning the accuracy of certain relativistic many-body approaches. © 1996 John Wiley & Sons, Inc.
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  • 170
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    International Journal of Quantum Chemistry 57 (1996), S. 697-705 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The results of ab initio RHF/3-21G, RHF/6-31G*, and MP2/6-31G** / / HF/6-31G* calculations for 10 possible configurations of OM4H6 molecules (MO · 3MH2, M = Be, Mg) are reported. Five isomers of OBe4H6 and three isomers of OMg4H6 have been found within an energy range of ã 15 kcal mol-1. The “lanternlike” C3v structure is the most favorable one for both complexes. Both molecules OM4H6 are stable to decomposition through all of the studied pathways. Chemical bonding in the OMk polyhedra containing two-, three-and four-coordinated oxygen atoms is discussed. © 1996 John Wiley & Sons, Inc.
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  • 171
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    International Journal of Quantum Chemistry 57 (1996), S. 707-714 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dependence of the rotational energy of small argon clusters on the magnitude and direction of their rotational angular momenta is obtained by two different methods, namely, by analytic descriptions parametric in structural variables (centrifugal displacements) and by classical simulations carried out in rotating frames so that rotational angular momenta are conserved. Potential energies are taken as additive Ar2 pair potentials [R. A. Aziz, J. Chem. Phys. 99, 4518 (1993)], augmented in some cases by three-body Axilrod-Teller interactions, thus complementing our earlier studies of rare-gas clusters modeled by additive Lennard-Jones oscillator (LJO) pair potentials [L. L. Lohr and C. H. Huben, J. Chem. Phys. 99, 6369 (1993)]. Quartic and sextic spectroscopic constants are found to be approximately 10% smaller when the Aziz pair potential is used, reflecting its greater stiffness as compared to the LJO potential. The sign of the sextic tensor coefficient for both tetrahedral Ar4 and octahedral Ar6 is such that for sufficiently high J the C2v (or D2h) structures with J parallel to a pseudo-C2 (or true C2) axis (saddle points on the rotational energy surface at low J) become local energy maxima, the D2d (or D4h) structures with J parallel to an S4 (or C4) axis representing the energy minima. The trigonal bipyramidal cluster Ar5 resembles both Ar3 and Ar4 in its rotational characteristics but with reduced manifestations of nonrigidity. As found with an LJO pair potential [D. H. Li and J. Jellinek, Z. Phys. D 12, 177 (1989)], the icosahedral Ar13 cluster displays a very slight preference for D3d structures with J parallel to a C3 axis, while the D5d structures with J parallel to a C5 axis are energy maxima and the D2h structures with J parallel to a C2 axis are saddle points on the rotational energy surface. The scalar quartic spectroscopic coefficient for Ar13 is found to be 2.15 × 10-14 times that for the reference diatomic Ar2. A variety of structural instabilities are described for Ar13 clusters with very high rotational energies. © 1996 John Wiley & Sons, Inc.
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  • 172
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    International Journal of Quantum Chemistry 57 (1996), S. 715-719 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction mechanism of the α, α and α, β elimination of hydrogen fluorides from alkyl fluorides has been studied theoretically. For fluoroethane as a reactant, the transition state (TS) optimized at the level of the 6-31G** basis set shows that the α, β elimination proceeds via a four membered-ring TS with a barrier height 64.6 kcal/mol, while the α, α elimination, via a three-membered ring TS with a 83.7 kcal/mol barrier. Four substituents, CH3, CN, F, and NH2, were used to investigate the substituent effect of elimination by using the 3-21G basis set. The calculated barriers show that NH2-substituted alkyl fluorides favor both the α, α and α, β elimination and these two reactions would be expected to proceed simultaneously. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 735-740 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The system of [Pt(CO)(AuPPh3)8]2+ represents an example of the spheroidal 18-electron cluster which consists of 283 atoms, 817 real-valence orbitals, and, eventually, 1634 complex spin-orbitals. The above system was investigated by an MO-LCAO-SCF study at the all-valence (nonempirical) quasi-relativistic and relativistic CNDO/1 levels. Owing to the complexity of the system under study, instead of an orbital interaction diagram, the density-of-state functions were generated. Their projections, obtained through net orbital populations, bear information about the positioning of MOS and eventual interaction of the AOS composing individual MOS. The platinum 5d orbitals exhibit a mixing with those of gold and contribute to only a few HOMOS; the rest of gold 5d orbitals, however, are situated at lower energies. © 1996 John Wiley & Sons, Inc.
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  • 174
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    International Journal of Quantum Chemistry 57 (1996), S. 729-733 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations were performed on the N-methylpyridones lithiated on the aromatic ring using a 6-31G* basis set. Whenever the lithium atom is on a carbon adjacent to the carbonylic group, a bridged structure is obtained where lithium is coordinated to both carbon and oxygen; these structures are the most stable isomers. © 1996 John Wiley & Sons, Inc.
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  • 175
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    International Journal of Quantum Chemistry 57 (1996), S. 721-728 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Three stable tautomeric forms, dienol (DE), ketoenol (KE), and diketo (DK), of 2,2′-bipyridyl-3,3′-diol BP(OH)2 were found in this study, using the semiempirical AM1 and MNDO-PM3 and ab initio (4-31G basis set) methods. All calculations were carried out without any symmetry restrictions. There is a good agreement between the ab initio calculated and experimentally obtained structural parameters for the DE tautomer. Transition structures, corresponding to the DK → KE and KE → DE processes have also been found. On the basis of the results from the present work, an asynchronous (two-step) DK → KE → DE mechanism of the IPT reaction in BP(OH)2 is proposed. © 1996 John Wiley & Sons, Inc.
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  • 176
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    International Journal of Quantum Chemistry 57 (1996), S. 757-766 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Post-Hartree-Fock calculations were carried out to predict the stabilities and properties of four HClCO … HCl, HClCO … HF, HFCO … HCl, and HFCO … HF molecular complexes. Full geometry optimizations and vibrational frequency calculations were performed for all systems using standard 6-311G(d, p) and 6-311G(2d,2p) basis sets at the MP2 level of theory. Single-point calculations of the interaction energies were carried out for all complexes at the MP4(SDTQ) level with the 6-311G(d, p) basis set. All systems were found to be stable and their predicted molecular parameters match well available (very scarce) experimental data. © 1996 John Wiley & Sons, Inc.
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  • 177
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    International Journal of Quantum Chemistry 57 (1996), S. 741-755 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computer modeling of events that occurred under the scanning tunneling microscope (STM) tip was considered from a chemical standpoint. The DYQUAMOD, semiempirical dynamical-quantum chemical program system, which well manifested itself in a quantitative studying of nano-sized objects, was transformed into the DYQUAFIELD program system involving an external electrostatic field. The fields of changeable configurations were simulated by a set of up to 200 point charges. Atomic system modeling was focused on obtaining local electron density (LED) as well as on the object chemical transformations caused by the field. This article presents the results of simulating LED of differently originated graphite films, of a field action on a set of stable molecules, and of an irreversible in-field reconstruction of the diamondlike film surface, which demonstrates a possible nano-sized memory element creation. © 1996 John Wiley & Sons, Inc.
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  • 178
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    International Journal of Quantum Chemistry 57 (1996), S. 767-773 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energetically possible ways of water condensation at the molecular level were considered. The quantum chemical calculations of the relative stability of elementary modules of the fractal structure without external fields using AM1, CNDO/2, and MNDO methods were done. It was shown that CNDO/2 gives the most adequate results for simple water clusters. Condensation energy per molecule was chosen as a criterion of the cluster stability. It was shown that the twisted modules are the stable structures with respect to the water dissociation. In comparing the energies of the icelike and twisted structures, we conclude that the latter may exist under certain conditions. © 1996 John Wiley & Sons, Inc.
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  • 179
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    International Journal of Quantum Chemistry 57 (1996), S. 775-780 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It has already been shown that the use of the localized many-body perturbation theory (LMBPT) makes its possible to calculate the interaction energy at the correlated level in a straightfoward way. In this article, we show that the correlated part of the interaction energy, furthermore, can simply be decomposed into dispersion and charge-transfer contributions using the LMBPT scheme. The CH2O + NH3 model system was chosen for the above study. © 1996 John Wiley & Sons, Inc.
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  • 180
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    International Journal of Quantum Chemistry 57 (1996), S. 781-799 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We describe by approximate MO calculation a number of species for which high spin states are either the ground state or lie very low in energy. These are models for the spin coupling in projected ferromagnetic organic materials. The theory guiding their construction is based on planar conjugated systems, while experimentally realized systems are often far from planarity. We can by appeal to steric decoupling explain the failure of the prediction that methoxy subsitution on metaphenylene-coupled nitroxides should stabilize the triplet. However, we find in general that the qualitative rules derived from discussion of planar systems are robust; drastic departures from planarity are required before they lose their value. © 1996 John Wiley & Sons, Inc.
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  • 181
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 182
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    International Journal of Quantum Chemistry 57 (1996), S. 801-810 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A general ab initio package using Slater-type atomic orbitals is presented. This package, called STOP, uses the one-center two-range expansion method to evaluate the multicenter electronic integrals. Thoroughly optimized numerical techniques, in particular, convergence accelerators and suitable Gauss quadratures, are used in the algorithms which provide accurate numerical values for all these integrals. STOP thus provides wavefunctions for general molecular structures at the self-consistent field level for the first time over a Slater-type orbital basis. © 1996 John Wiley & Sons, Inc.
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  • 183
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    International Journal of Quantum Chemistry 57 (1996), S. 823-841 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The results of detailed theoretical investigations of the properties of atomic and diatomic H in GaAs were analyzed with the effort to give a unified picture of the H behavior in this semiconductor. All calculations were performed in the pseudopotential density-functional framework using a supercell approach. We studied both shallow impurities (Si and C) and deep point defects (As antisite and Ga vacancy). Generally, a simple scheme may be applied in order to describe the H interaction with shallow impurities, where a key role is played by the amphoteric character of H. More complex mechanisms are involved in the deep impurity case that are related to new, interesting effects of H incorporation in GaAs. © 1996 John Wiley & Sons, Inc.
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  • 184
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    International Journal of Quantum Chemistry 57 (1996), S. 811-821 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio dynamic polarizabilities per unit cell of infinite stereoregular molecular hydrogen chains are calculated at the coupled Hartree-Fock level of approximation by using the random-phase approximation and the STO-3G and double-zeta atomic basis sets. Comparison with molecular calculations on increasingly large oligomeric chains emphasizes the nice extrapolation property of the polymeric technique that provides asymptotic values very close to the largest oligomeric values. The poles of the polarization propagator associated with the electric dipole polarizability correspond to the singlet excitation energies. Comparisons are performed with other techniques that provide the band gap. © 1996 John Wiley & Sons, Inc.
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  • 185
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    International Journal of Quantum Chemistry 57 (1996), S. 851-860 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio crystal orbital calculations on three-dimensional crystals of tetrathiafulvalene-tetracyanoquinodimethane (TTF-TCNQ), diprotonated deoxycytidine-5′-monophosphate monohydrate (5′-dCMP*2H*1Water), disodium deoxyguanosine-5′-monophosphate tetrahydrate (5′-dGMP*2Na*4Water), disodium uridine-3′-monophosphate tetrahydrate (3′-UMP*2Na*4Water), monosodium monoprotonated deoxyadenosine-5′-monophosphate hexahydrate (5′-dAMP*1H*1Na*6Water), disodium deoxycytidine-5′-monophosphate heptahydrate (5′-dCMP*2Na*7Water), cis-polyacetylene (cis-PA), and polythiophene (PTP) were carried out using the CRYSTAL92 routine package. A suitable basis set has been found that enables one to carry out the above calculations at the STO-3G level of accuracy using SILICON GRAPHICS workstations. However, to obtain reasonable results for three-dimensional crystals of polymers, one has to use much more extended basis sets. © 1996 John Wiley & Sons, Inc.
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  • 186
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    International Journal of Quantum Chemistry 57 (1996), S. 843-849 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electrostatic potential and the intensity of the electric field above the isolated layer of the phyllosilicate mineral talc (layer group symmetry C2/m) were computed using the semiempirical INDO/2 method. The electrostatic potential Vc and the intensity of electric field (OVERBAR)Ec, above the surface of semi-infinite crystal were obtained as the sum of the contributions of the infinite number of individual layers. The interaction energy Uint between a noble gas atom and the talc crystal was computed as (a) a pure Lennard-Jones energy ULJ and (b) the sum of ULJ and interaction energy with induced dipole moment: Uind = α|(OVERBAR)E|2, where α is the dipole polarizability of the noble gas atom. The one-particle configurational integral was calculated within the classical mechanics limit. Both the free and adsorbed gas phases were assumed to be ideal. The obtained results demonstrate that in the case of uncharged and nonpolar adsorbate and an uncharged surface the electrostatic part of the interaction energy should be included in the total interaction energy. © 1996 John Wiley & Sons, Inc.
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  • 187
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    International Journal of Quantum Chemistry 57 (1996), S. 871-879 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio RHF/STO-3G, 3-21G, and 6-31G band structure calculations were carried out on an extended regular chain of beryllium atoms ((SINGLEBOND)Be2(SINGLEBOND))∞ to study its stability in comparison with corresponding data on finite chains and previously reported results on small elemental beryllium clusters. It is found that, starting from a linear distribution of atoms along the chain, the system evolves toward a regular zigzag planar structure. The total RHF energy per constituent atom is higher for the chains than for the clusters and is thereby suggestive of that isolated chains are unlikely to exist except in constraining channels of host structures. In the limit of the infinite chain, there are signs indicating that the RHF model is no longer an adequate description. © 1996 John Wiley & Sons, Inc.
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  • 188
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    International Journal of Quantum Chemistry 57 (1996), S. 887-896 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Extensive self-consistent real-space recursion-method calculations were performed for the Pt overlayer or the Pt7 cluster on the Ni(111) surface and for hydrogen chemisorption on these systems. Correlations between the surface-atom local density of electronic-state properties before chemisorption, surface reactivity, and the initial-state contribution to the metal core-level shifts, respectively, is documented and discussed. The experimentally observed catalytic properties of Pt—Ni alloy surfaces are also briefly considered. © 1996 John Wiley & Sons, Inc.
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  • 189
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    International Journal of Quantum Chemistry 57 (1996), S. 861-870 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We investigated the adsorption and heterolytic dissociation of H2O and H2 molecules on a (ZnO)22 cluster corresponding to ZnO (0001), (000(OVERBAR)1), and (10(OVERBAR)10) surfaces using MNDO, AM1 and PM3 semiempirical procedures. The geometry of the adsorbed molecule has been optimized in order to analyze binding energies, charge transfer, and preferential sites of interaction. The adsorbed species interact most strongly when it is bonded to the twofold coordinated zinc atom of the cluster surface. The interaction of the H2O molecule with the surface of ZnO has a charge transfer from H2O to the surface ranging between 0.17 and 0.27 au. The neighboring atoms of the surface are the main receptors during the process of charge transfer. Our results indicate that there is a weak bonding of the hydrogen atom from OH with the oxygen surface atom that could produce the O(SINGLE BOND)H·O band. The interaction of the H2 molecule with the surface is generally weak and only the PM3 method yields a strong binding energy for this interaction. There is a charge transfer from the H2 molecule to the surface. The chemisorption of H on oxygen atom of the surface transfer charge from the surface to the H. We also calculated the vibrational analyses for these interactions on ZnO surface and compared our results with available experimental data. © 1996 John Wiley & Sons, Inc.
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  • 190
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    International Journal of Quantum Chemistry 57 (1996), S. 881-886 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The assumption of the concentration dependence of the energy of formation of vacancy-type defects (VTD) in solids is applied to the procedure of the estimation of the defect interaction parameters. The VTD effective interaction is described by the mixing potential. The sign of this potential characterizes the stability of the VTD-atom “alloy.” Employing the example of Nb, we illustrate the ability of the suggested approach to describe the stability of the VTD-atom “alloy.” © 1996 John Wiley & Sons, Inc.
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  • 191
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    International Journal of Quantum Chemistry 57 (1996), S. 913-918 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present article, polymethine and annulene electronic spectra are described in a unique way by means of the Pariser-Parr-Pople method. The analytical expressions were derived for the first π-electron transitions energies. The character of the annulene spectra, like the character of the open-chain spectra, was shown to be dependent on the ratio between electron and site numbers. The Dahne's triad theory and the existence of finite energy gap in polymethines are discussed. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 897-901 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: On the basis of a nonempirical pair potential, the temperature dependencies of the long-range-order parameter of NiTi and AuPd are calculated. The suggested effective potential approach allows one to describe the changes in phase relations. The evaluation of the internal mixing energy of alloys is carried out in the framework of the static concentration waves theory of Khachaturyan. The model outlines the technique to calculate the values of the energy parameters of the ordering process from first principles. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 919-927 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We extend our own previous applications of the microscopic coupled-cluster method (CCM) to quantum antiferromagnets. In particular, we carry out a systematic calculation involving high-order multispin correlations for the spin-1/2 anisotropic Heisenberg models on the one-dimensional chain and the two-dimensional square lattice. Their ground-state properties are obtained as functions of the anisotropy parameter. Our CCM analysis not only produces accurate results for such physical quantities as the ground-state energy which are comparable to the best results from other techniques, but it also enables us to study the quantum phase transitions of the spin models in a systematic and unbiased manner. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 903-912 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A series of the d6 iron(II) complexes with bulky organic ligands (like [Fe(bipy)2(NCS)2]) can exist in two spin forms: in the low-spin (S = 0) form at low temperature and in the high-spin (S = 2) form at high temperature. In the crystal phase, the transition between these two forms may be either smooth or abrupt. Recently, the abrupt spin transitions were identified with the first-order transitions between different ordered phases occurring in the binary mixtures of the two spin forms of the complex. Here, we apply the method widely used in the field of binary metal alloys to the analysis of the spin transitions. The molecules undergoing the spin transition are modeled by octahedra of variable size which interact when they are immediate neighbors in the crystal lattice. We show that some simple assumptions concerning the intermolecular interaction and crystal geometry relaxation allows one to get the desired first-order phase transitions together with a satisfactory description for the crystal compressibility as a function of temperature. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 929-941 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential energy surfaces of β-hydroxypropionic acid and 3-aminopropionamide have been investigated by means of RHF/4-31G calculations. Structures, reaction paths for internal rotations, and the respective energy barriers are reported. The influence of the various intramolecular interactions on structural and energetical properties is shown and compared to the results previously obtained for β-alanine. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 949-957 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio SCF calculations with the 6-31G basis set for the thymine dimer (cys-syn form) and the thymine dimer radical cation are reported. The fusion of the thymine bases at the C5 and C6 positions involves the formation of a cyclobutane ring with puckering. The puckering causes a notable difference in the electronic structures of the two bases of the thymine dimer. The density of the HOMO orbital of the thymine dimer is localized on the O2, N1, and C6 atoms of both thymine rings, with the higher density on one of the rings. The HOMO orbital has a bonding character on the C6(SINGLEBOND)C6 bond. In the thymine dimer radical cation, the unpaired electron is localized mainly on the lengthened C6(SINGLEBOND)C6 bond with the higher density on one of the C6 atoms and to a lesser extent on the N1 atoms of both rings. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 959-970 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Interactions of DNA bases frequently involve the DNA base amino groups. In contrast to the empirical force fields, the ab initio calculations predict nonplanar DNA base amino groups. The same conclusion also follows from the density functional theory (DFT) calculations. Both local and nonlocal density approximations were used. Optimized geometries of two other molecules with nonplanar amino groups (aniline, formamidine) are presented for comparison. The influence of nonplanar DNA base amino groups on the conformational variability of DNA is discussed. © 1996 John Wiley & Sons, Inc.
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  • 198
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    International Journal of Quantum Chemistry 57 (1996), S. 943-948 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational behavior and the stability of thiazolium and thiamin diphosphate (ThDP) adducts formed by the C2 addition of the substrates pyruvate and glyoxylate to the corresponding thiamin systems are investigated within the force-field version PIMM90 as well as the semiempirical AM1 and PM3 methods. Moreover, the reaction coordinate of the decarboxylation process of the adducts with respect to the C2α(SINGLEBOND)COO- bond are calculated by PM3 and AM1. The calculations on the key intermediates of the Breslow mechanism are performed in order to study the steric aspects of both substrate adducts that show a different pathway in the catalytic cycle. The alternative structural findings for the decarboxylation products are compared with first 6-31C* studies on the corresponding thiazolium model systems. Especially, the PM3 calculations show that the elimination of CO2 is favored if the arrangement of the carboxylate group is nearly perpendicular to the plane of the thiazolium ring. These results support the least-motion maximum-overlap mechanism in the enzymatic decarboxylation reaction, proposed by Kluger. The most stable conformers of the ThDP adducts and its decarboxylation products are characterized by V-like structures and the formation of a significant intramolecular hydrogen bonding under participation of the 4′-aminopyrimidine ring. © 1996 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 57 (1996), S. 971-974 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations were performed on the tautomers and conformers of N-hydroxyurea using a 6-31G** basis set. The minimum-energy structures have been found and the importance of the intramolecular hydrogen bond as the stabilizing factor was pointed out. © 1996 John Wiley & Sons, Inc.
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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