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  • 1990-1994  (52,754)
  • Chemistry  (52,158)
  • Organic Chemistry  (4,530)
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  • 101
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 223 (1994), S. 101-120 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Metallocenes have gained widespread interest as catalysts for olefin polymerization due to their high activity and versatility. A large range of new polymers with narrow molecular weight distribution and different microstructures can be produced with these “single-site” catalysts. These highly active catalysts which are able to produce 40 tonnes of polyethylene per gram zirconium per hour are even capable of incorporating remarkable amounts of sterically demanding olefins and dienes in copolymerization with ethylene. Isotactic, syndiotactic, stereoblock and isoblock polyolefins are accessible by variation of the metallocene ligands. Similarly, the isotacticity and molecular weight of the generated polyolefins are influenced by the ligand structure. By heterogenization of the metallocene on metal powder or silica polymers with substantially higher molecular weight, higher melting points and other new properties may be attained. Cyclic olefins like cyclopentene, norbornene or dimethanooctahydronaphthalene polymerize without ring-opening to yield highly melting and poorly soluble polymers. By separation of the racemic catalyst into enantiomers, optically active alkanes and alkenes are accessi-ble. Trimers are obtained with ee of 95%. These results provide new insights into the mechanism of Ziegler-Natta catalysis.
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  • 102
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Product demands for polypropylene polymers cover a wide range of properties. Metallocene catalysts open up the way to influence the molecular properties of polypropylene by altering the ligand system of the metallocene complexes. This leads to new products with application properties which are not available with conventional catalysts. Concepts are presented to adapt metallocenes to modern, industrial polymerization processes. Some examples illustrate the particular advantages of this new generation of catalysts.
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  • 103
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 223 (1994), S. 193-201 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: New polymers with an alternating sequence of aliphatic chains and coronands were synthesized via Diels-Alder addition polymerization of bis(2-pyrones) with bismaleimides. The chemical structures of these polymers 6 are supported by NMR spectra, model reactions and crystal X-ray structure analysis. The tetrafunctional maleimide 5 was synthesized and the cyclization of 5 to the bicycle 9 with 2 mol monopyrone 8 was carried out.
    Additional Material: 3 Ill.
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  • 104
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: After a general introduction including definition of biodegradability, the recent literature is briefly summarized. The results obtained in our laboratory for various polymers in three different composting units are then presented. They demonstrate that there is an urgent need for a quantitative method to characterize polymer biodegradation. For that purpose, a manometric method which allows the measurement of the oxygen consumed by the growing microorganisms has been developed. It has been tested with various inocula of increasing complexity: one Streptomyces sp., a mixture of three Streptomyces (badius, setonii and viridosporus), a compost extract or sewer sludge, growing in the presence of low molecular weight molecules as sole carbon source. Its performances and limitations are discussed. It is then applied to various polymer systems: polyesters and their constituent units, autoxidized polyethylene (APE) and its model compounds, polyvinyl alcohol (PVAl), starch and cellulose. The biodegradability of these polymers is characterized and their potential use as biodegradable materials for packaging, sanitary and agricultural uses is discussed.
    Additional Material: 9 Ill.
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  • 105
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 215 (1994), S. 175-188 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Description / Table of Contents: Die Entfernung und Trennung einer Reihe von Metallionen mit Hilfe des wasserläoslichen Cetylpyridiniumchlorid-modifizierten Poly(ethylenimin)s (PEI-CPC) wurden in Kombination mit der Membranfiltration untersucht. Die Liquid-Phase Polymer-Based Retention(LPR)-Methode wurde zur Abtrennung von niedermolekularen Spezies beiverschiedenen pH-Werten und bei mehreren Elementkonzentrationen herangezogen. Die Studie umfaßt wäassrige Läosungen der Anionen Chromat und Phosphat sowie der Kationen Cu(II), Zn(II), Co(II), Ni(II), Cr(III), Fe(III), Cd(II), Pb(II) und Sr(II). Die Ergebnisse zeigen, daß eine hohe Retention für beide Anionen und auch für die meisten untersuchten Metallionen erzielt wurde. PEI-CPC zeigte gute Abtrenneigenschaften für Chromat-und Phosphationen selbst bei relativ hohen Anionenkonzentrationen 85 bzw. 150 mg · L-1und ebenso fäu die meisten untersuchten Metallionen. Im Falle der Cu(II)-, Ni(II)-und Sr(II)-Lonen wurde eine selektive Interaktion beobachtet. Das Polymerreagenz und seine Interaktionsprodukte wurden durch IR- und UV/Vis-Spektrometrie sowie Viskosimetrie charakterisiert. Zusäatzlich wurde das Interaktionsverhalten durch die Retentionsfäahigkeit untersucht. Eine gute Korrelation wurde zwischen den Retentionsdaten und den IR-und UV/VIS-Spektren der Interaktionsprodukte des Polymerreagenzes mit den Metallionen gefunden.
    Notes: The removal and separation of a series of ions by the water-soluble cetylpyridinium chloride-modified poly(ethyleneimine) (PEI-CPC) in conjunction with membrane filtration were investigated. The Liquid-Phase Polymer-Based Retention (LPR) method was applied to study the removal of the low-molecular species at different pH values and at several element concentrations. The study comprises aqueous solutions of the anions chromate and phosphate, and of the cations Cu(II), Zn(II), Co(II), Ni(II), Cr(III), Fe(III), Cd(II), Pb(II) and Sr(II). The results show that a high retention was attained in neutral solutions for both anions and also for most metal ions investigated. PEI-CPC exhibited good removing abilities for chromate and phosphate ions even at relatively high concentrations of anions (85 and 150 mg · L -1, respectively) and also for most of the metal ions studied. In the case of Cu(II), Ni(II), Cd(II), and Sr(II) ions, selective interactions were observed. The polymer reagent and its interaction products were characterized by IR, UV/VIS spectrometry, and viscometry. In addition, the interaction behaviour was investigated by the retention ability. A good correlation was found between the retention data and the IR and UV/VIS spectra of the interaction products of the polymer reagent with the metal ions.
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  • 106
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The photo and thermal reactivity of nitroxyl radicals derived from di-, (oligo)meric hindered amine light stabilizers (HALS) on iso-octane, a model compound for polyprophylene, was studied and compared to that of monomeric 2,2,6,6-tetramethyl- piperi-dine-N-oxyl (TEMPO).The exchange-interaction among 〉N—O. groups seems to affect only the thermal process.
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  • 107
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Chemiluminescence (CL) technique was used to study the thermal oxidation of polyamide 6 samples with different ratio of terminal basic and acid groups, which perform a distinct effect on kinetics of the isothermal CL - time runs at 120-140°C. The isothermal experiments are complemented by nonisothermal ramp experiments where the CL intensity is monitored against temperature at a programmed rate of temperature increase.The relation of parameters such as initial CL intensity, integrated value of CL intensity for both isothermal and nonisothermal experiments and rate constants corresponding to CL - time curves was discussed within the results of other oxidation stability tests as absroption of oxygen, thermogravimetry, etc.
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  • 108
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 217 (1994), S. 31-41 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Description / Table of Contents: Die strahleninduzierte Pfropfpolymerisation von 4-Vinylpyridin (VP) und 1 -Vinylimidazol (VIm) auf ein Styrol-Isopren-StyroI-Blockcopolymeres (SIS) sowie die Gasdurchlässigkeit von daraus hergestellten Membranen wurde untersucht. Eine Komplexierung der modifizierten SIS-Copolymeren (SIS-g-VP bzw. SIS-g-VIm) mit Cobalt enthaltenden Schiffschen Basen (CoS) als fixierte Sauerstoffträger verbesserte deren Sauerstoffdurchlässigkeit. Der Mechanismus des Sauerstofftransports wird diskutiert.
    Notes: The grafting of 4-vinylpyridine (VP) and 1-vinylimidazole (VIm) onto styrene-isoprene-styrene (SIS) triblock copolymer by radiation-induced graft copolymerization was studied. The effect of grafting degree on gas permeability of membranes made of grafted copolymers was investigated. The complex formation of the modified SIS (SIS-g-VP or SIS-g-VIm) with cobalt-containing Schiff's bases (CoS) in chloroform solution was studied. Facilitated transport of molecular oxygen in modified SIS membranes containing CoS as fixed carrier of oxygen, and oxygen permeability in modified SIS membranes due to the oxygen binding ability to CoS was observed. Mechanism of oxygen transport across the SIS-g-VP-CoS and SIS-g-VIm-CoS membrane is discussed.
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  • 109
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 217 (1994), S. 61-69 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Description / Table of Contents: Polyethylen (PE, 100 Gew.-Teile) wurde mit Methylmethacrylat (MMA, bis zu 5 Gew.-Teilen) gemischt und anschließend mit Elektronen (bis zu 20 Mrad) bestrahlt, um PE/MMA-Pfropfcopolymere herzustellen, deren Bildung mittels IR-Spektroskopie nachgewiesen wurde. Gelbildung wies auf eine Vernetzung während der Bestrahlung hin. Zunehmende MMA-Konzentration und höhere Bestrahlungsdosen verringerten die Kristallit-Schmelztemperatur und den Kristallisationsgrad des PE. Zugfestigkeit, Bruchdehnung und Dielektrizitätskonstante wurden gemessen und diskutiert.
    Notes: Polyethylene (PE, 100 parts by weight) was mixed with methyl methacrylate (MMA, up to 5 parts by weight) at 120°C and subsequently exposed to electron radiation of different doses (up to 20 Mrad) to prepare PE/MMA graft copolymers. Successful grafting was verified by IR spectroscopy. Gel formation indicated crosslinking. Grafting increased with increasing MMA concentration and increasing irradiation dose. Crystalline melting temperature and percent crystallinity were lower than those of untreated PE. Tensile strength, elongation at break and dielectric constant of grafted samples were measured and discussed.
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  • 110
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 217 (1994), S. 159-190 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Description / Table of Contents: Mit einer Reihe unterschiedlicher Methoden wurde versucht, die Zähigkeit tri- und tetrafunktioneller Epoxid- sowie ungesättigter Polyesterharze zu erhöhen. Die Epoxidharze wurden durch harte, thermisch stabile Konstruktionskunststoffe, ein Bisphenol-A Polycarbonat bzw. ein thermoplastisches Polyetherimid (Ultem 1000), modifiziert. Bei den ungesättigten Polyesterharzen wurde ein anderes Verfahren angewendet: Zwei handelsübliche flüssige Kautschuke wurden chemisch modifiziert, um ihre Reaktivität gegenüber den funktionellen Gruppen der Matrix zu steigern: Ein hydroxyterminiertes Polybutadien und ein aminoterminiertes Butadien-Acrylnitril-Copolymeres wurden zu Polymeren mit Isocyanat- bzw. Maleimidendgruppen umgesetzt. Ein weiteres hier beschriebenes System zielt darauf ab, die rasch abnehmende Steifheit der Polyestermatrix bei Temperaturen oberhalb Raumtemperatur zu verringern. Dazu wurde ein hitzehärtbares Bismaleimidharz als zweite co-reaktive Komponente in den Polyester eingebracht.
    Notes: A number of different approaches were used to enhance the toughness of tri- and tetrafunctional epoxies and of unsaturated polyester resins. In the case of epoxies, tough, thermally stable, engineering thermoplastics, namely a bisphenol-A polycarbonate and a thermoplastic poly(ether imide) (Ultem 1000) were employed as modifiers. For unsaturated polyesters a different approach was adopted: two commercial liquid rubbers were chemically modified to enhance their reactivity towards the matrix functionalities. In particular, a hydroxy-terminated polybutadiene and an aminoterminated butadiene-acrylonitrile copolymer were transformed into isocyanate-terminated and maleimide-terminated rubbers, respectively. A further system which is described in the present contribution is aimed at mitigating another deficiency of the polyester matrix, namely its rapidly decreasing rigidity at temperatures above room temperature. In this case, a thermosetting bismaleimide was incorporated into the resin as a co-reactive second component.
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  • 111
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Angewandte Makromolekulare Chemie 218 (1994), S. 1-10 
    ISSN: 0003-3146
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Description / Table of Contents: Eine Reihe sulfonierter kationischer m-Kresol-Paraformaldehyd-Harze wurden aus dem Mark ägyptischer Bagasse hergestellt. Reaktionsbedingungen werden angegeben, und die Eigenschaften der hergestellten Bagassemark/m-Kresol/Formaldehyd-Harze werden mit denen von Harzen ohne Bagassemark verglichen. Die synthetisierten Polymere sind stabil in Wasser, verdünnten Mineralsäuren (1 M) und organischen Lösungsmitteln sowie gegenüber thermischer Behandlung. Die Harze besitzen Kationenaustauscherkapazitäten von bis zu 2,91 meq/g (bezogen auf trockenes Harz) und werden als Austauschermaterialien für eine mögliche Trennung zweiwertiger Kationen getestet.
    Notes: A series of sulfonated cationic resins have been prepared and characterized from Egyptian bagasse pith wastes (as a source of cheaper and renewable material) with m-cresol and paraformaldehyde as a crosslinking agent. Reaction conditions for the preparation are presented and properties of the synthesized sulfonated bagasse pith-m-cresol-formaldehyde resins are described and compared with resin not containing bagasse pith. The synthesized resins are stable in water, dilute mineral acids (1 M), organic solvents, and to thermal treatment. The resins having a cation exchange capacity up to 2.91 meq g-1 of dry resin, are being introduced as new exchangers. The synthesized resins are used in the study of the possible separation of some bivalent cations.
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  • 112
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 285-292 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have studied by electron microscopy the size and morphology of the complexes obtained with different DNAs (between 500 and 5243 base pairs long) and four different proteins: sea urchin histone H1; sea cucumber histone φ0, chicken erythrocyte histone H5, and clupeine. Surprisingly, the type of protein used has only a marginal influence on the complexes formed. The molecular weight and topology of DNA do not show any influence. The size of the complexes depends strongly on the ratio of positive to negative charges and also on the ionic conditions. Our studies have been mainly carried out at a ratio of 0.4. Under these conditions the average thickness of rods and toroids observed varies between 165 Å at 1.5 mM salt to 290 Å at 100 mM salt, with minor variations around these values depending on the type of DNA and protein used. We conclude that the formation of DNA condensates is mainly determined by a balance of electrostatic and intermolecular forces, the influence of specific interactions is only marginal. This conclusion seems to apply not only to the complexes described here, but also to chromatin fibers and to DNA condensed by low molecular weight counterions and other compounds (polyamines, inorganic ions, ethanol, etc.). © 1994 John Wiley & Sons, Inc.
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  • 113
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 299-301 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 114
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 171-175 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: One-dimensional nmr exchange spectroscopy was carried out to determine thermodynamic parameters of cyclophilin-induced cis-trans isomerization of succinyl-Ala-Phe-Pro-Phe-p-nitroanilide. Rate measurements were possible at physiological temperatures. The kc/Km of rat cyclophilin was found to he 12.8 (±0.5) s-1 μM-1 at 37°C, intermediate to previously reported values that used a coupled enzyme assay extrapolated to this temperature. Activation energies (ΔG≠) for the uncatalyzed and catalyzed reaction at 37°C were found to be 19.7 and 17.1 kcal/mol, respectively, and were primarily due to an enthalpic barrier. © 1994 John Wiley & Sons, Inc.
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  • 115
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 209-215 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Discontinuous volume transitions in poly(acrylic acid) gels were studied by determining equilibrium swelling curves of small gel beads immersed in salt solutions containing varying concentrations of Ca2+ and Na+. Reversible contractions of gel membranes associated with Ca2+-Na+ exchange were examined using both isometric and isotonic recording devices. A discontinuous change in electric conductance was demonstrated in association with Ca2+-Na+ exchange in gel membranes. These experimental findings provide a sound physicochemical basis for elucidating the mechanism of nerve excitation. © 1994 John Wiley & Sons, Inc.
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  • 116
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Fourteen tryptic peptides and nine intermediates were identified as products of trypsin digestion of reduced and S-3-(trimethylated amino) propylated lysozyme. Kinetics of the appearance and disappearance of these products were observed by monitoring the peak areas on the chromatogram. In spite of the complicated reaction pathways, kinetics of the digestion of proteins and several intermediate products show simple decay curves with a single rate constant. In this paper, the trypsin susceptibility of the individual cleavage site is defined as a hydrolytic rate constant of the susceptible peptide bond in the presence of 10 nM trypsin. The cleavage sites of unfolded lysozyme are classified into two groups in terms of the trypsin susceptibility: one has a high susceptibility (10-20 h-1) and the other a low susceptibility (1.0-2.0 h-1). In the unfolded state of lysozyme, in conclusion, the region from residues 15 to 61 has a strong resistance to trypsin digestion; on the other hand, the C-terminal half of the polypeptide chain is flexible enough to fit into the active site of trypsin.In addition, six kinds of pentapeptides were synthesized as analogues of lysozyme fragments including Arg 14, Arg 21, Lys 33, Arg 45, Arg 61, and Arg 73. Kinetics of typtic digestion of them were observed. Both kcat and KM were determined for these synthetic pentapeptides. The susceptibility of each cleavage site in pentapeptides is determined and compared with that corresponding in proteins. The susceptibility is usually higher when the susceptible peptide chain is flexible. However, susceptibilities of a few sites in proteins are lower than those in pentapeptides. This means that the peptapeptides, this means that the peptide chains tend to fold locally to prevent trypsin from binding to the sites. It was found that the sites of Arg 21 and Arg 45 are indeed resistant to trypsin, but the site of Lys 33 is not so much, although the hydrolytic rate at Lys 33 itself is extremely slow. © 1994 John Wiley & Sons, Inc.
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  • 117
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    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 239-247 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In weak electric fields, the motion of DNA molecules undergoing gel electrophoresis may be described by biased reptation. We argue that the degree of molecular orientation induced by the field is determined by a competition between longitudinal fluctuations and drift of the molecule along the tube. A self-consistent calculation shows that the end-to-end vector of long molecules varies with the square root of the field strength, and not linearly as previously supposed. This leads to a number of new predictions about the field dependence of the molecular mobility and the size limit of resolution. We present the results of computer simulations that support the predictions of the theory of biased reptation including fluctuations. Finally, we discuss the correspondence with experimental data and the implications of our findings for the optimization of DNA electrophoresis. © 1994 John Wiley & Sons, Inc.
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  • 118
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    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 249-259 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A systematic study has been undertaken to prove or disprove the predictions of a revised reptation model, biased reptation with fluctuations (BRF). Our data, which scan about two orders of magnitude of DNA sizes and of electric fields, and a fourfold range of gel concentrations, are in qualitative and quantitative agreement with the model and support the applicability of this theory to DNA gel electrophoresis. In particular, we show that the mobility in the compression zone scales as the first power of the electric field, and that the limit of separation scales as the inverse first power of the electric field, for low enough fields. © 1994 John Wiley & Sons, Inc.
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  • 119
    Electronic Resource
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    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 227-237 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The counterion density and the condensation region around DNA have been examined as functions of both ion size and added-salt concentration using Metropolis Monte Carlo (MC) and Poisson-Boltzmann (PB) methods. Two different definitions of the “bound” and “free” components of the electrolyte ion atmosphere were used to compare these approaches. First, calculation of the ion density in different spatial regions around the polyelectrolyte molecule indicates, in agreement with previous work, that the PB equation does not predict an invariance of the surface concentration of counterions as electrolyte is added to the system. Further, the PB equation underestimates the counterion concentration at the DNA surface, compared to the MC results, the difference being greatest in the grooves, where ionic concentrations are highest. If counterions within a fixed radius of the helical axis are considered to be bound, then the fraction of polyelectrolyte charge neutralized by counterions would be predicted to increase as the bulk electrolyte concentration increases.A second categorization - one in which monovalent cations in regions where the average electrostatic potential is ledd than -kT are considered to be bound - provides an informative basis for comparison of MC and PB with each other and with counterion-condensation theory. By this criterion, PB calculations on the B from of DNA indicate that the amount of bound counterion charge per phosphate group is about .67 and is independent of salt concentration. A particularly provocative observatiob is that when this binding criterion is used, MC calculations quantitatively reproduce the bound fraction predicated by counterion-condensation theory for all-atom models of B-DNA and A-DNA as well as for charged cylindera of varying lineat charge densities. For example, for B-DNA and A-DNA, the fractions of phosphate groups neutralized by 2 Å hard sphere counterions are 0.768 and .817, respectively. For theoretical studies, the rediys enclosing the region in which the electrostatic potential is calculated studies, the radius enclosing the region in which the electrostatic potential is calculated to be less than -kT is advocated s a more suitable binding or condensation radius that enclosing the fraction of counterions given by (1 - ξ-1). A comparsion of radii calculated using both of these definitions is presented. © 1994 John Wiley & Sons, Inc.
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  • 120
    Electronic Resource
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    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 101-108 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Poly(L-lysine) having dansyl (5-dimethylamino-1-naphthalene-sulfonyl) groups to its side chains was prepared. The fluorescence spectra and fluorescence anisotropy ratios of the dansyl (DNS) group were measured in various conditions. In aqueous solution the increase in emission intensity was observed reflecting the alkali-induced coil-to-helix transition. In aqueous-methanolic solutions with methanol content above 60 wt %, the poly(L-lysine) with DNS group (DNS-PLL) was probed to show α-helical conformation from CD spectra. With addition of alkali, the increase in fluorescence intensity of α-helical DNS-PLL and the drastic change in fluorescence anisotropy ratio were observed. In this case the rotational mobility of DNS probe decreases, gives a minimum at a certain concentration of added alkali, and then increases again up to approximately the initial level. At the concentration where the rotational mobility gives the minimum, intensity of scattered light gives a maximum. This shows that suppression of the mobility of DNS side chains is caused by the intermolecular aggregation of α-helical DNS-PLL. This concentration of added alkali corresponds to the midpoint of neutralization to charged side chains of the DNS-PLL. The interaction that causes aggregate of α-helical DNS-PLL is suggested to be the intermolecular hydrogen bonding between neutralized and unneutralized side chains. © 1994 John Wiley & Sons, Inc.
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  • 121
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    New York : Wiley-Blackwell
    Biopolymers 34 (1994), S. 121-142 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have used the elementary generator matrices outlined in the preceding paper to examine the conformational plasticity of the nucleic acid double helix. Here we investigate kinked DNA structures made up of alternating B- and A-type helices and intrinsically curved duplexes perturbed by the intercalation of ligands. We model the B-to-A transition by the lateral translation of adjacent base pairs, and the intercalation of ligands by the vertical displacement of neighboring residues. We report a complete set of average configuration-dependent parameters, ranging from scalars (i.e., persistence lengths) to first- and second-order tensor parameters (i.e., average second moments of inertia), as well as approximations of the associated spatial distributions of the DNA and their angular correlations. The average structures of short chains (of lengths less than 100 base pairs) with local kinks or intrinsically curved sequences are essentially rigid rods. At the smallest chain lengths (10 base pairs), the kinked and curved chains exhibit similar average properties, although they are structurally perturbed compared to the standard B-DNA duplex. In contrast, at lengths of 200 base pairs, the curved and kinked chains are more compact on average and are located in a different space from the standard B- or A-DNA helix. While A-DNA is shorter and thicker than B-DNA in x-ray models, the long flexible A-DNA helix is thinner and more extended on average than its B-DNA counterpart because of more limited fluctuations in local structure. Curved polymers of 50 base pairs or longer also show significantly greater asymmetry than other DNAs (in terms of the distribution of base pairs with respect to the center of gravity of the chain). The intercalation of drugs in the curved DNA straightens and extends the smoothly deformed template. The dimensions of the average ellipsoidal boundaries defining the configurations of the intercalated polymers are roughly double those of the intrinsically curved chain. The altered proportions and orientations of these density functions reflect the changing shape and flexibility of the double helix. The calculations shed new light on the possible structural role of short A-DNA fragments in long B-type duplexes and also offer a model for understanding how GC-specific intercalative ligands can straighten naturally curved DNA. The mechanism is not immediately obvious from current models of DNA curvature, which attribute the bending of the chain to a perturbed structure in repeating tracts of A · T base pairs. © 1994 John Wiley & Sons, Inc.
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  • 122
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    Biopolymers 34 (1994), S. 203-208 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The relaxed potential energy surfaces of chitobiose were calculated based on the MM3-force field by optimizing dimer structures on a 10° grid spacing of the torsional angles about the glycosidic bonds (Φ,Ψ). The 36 conformations; the four combinations of the hydroxymethyl group orientations coupled with the nine of the secondary group ones -  were assumed for each Φ,Ψ conformation. The four conformations, each differing in the hydroxymethyl group orientations, were considered for the whole Φ,Ψ space, and all the 36 conformations, for the restricted space of low energy. While the resulting energy map and the structures of the energy minima were similar to those proposed for cellobiose in many respects, more restricted energy profile was suggested for the relaxed map of chitobiose where differences in the energy level between the global minimum and the local minima were within 5.4 kcal/mol, compared with the equivalent value of 3.6 kcal/mol for cellobiose. Further depression of the global minimum occurred when the acidic residue was used. The Monte Carlo samples of the chitosan chain were generated based on the relaxed map to predict the unperturbed coil dimension in solution. The chitosan chains showed Gaussian behavior at x = 500 (x, degree of polymerization) and gave the characteristic ratio Cx, of about 70, which was much larger than the experimental values observed for the chitosan and cellulosic chains. © 1994 John Wiley & Sons, Inc.
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  • 123
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: A three-dimensional Hartree-Fock crystal-orbital calculation on the crystal of diprotonated deoxycytidine-5′-monophosphate monohydrate has been carried out using the CRYSTAL92 routine package. According to the calculation, this crystallohydrate can be considered a quasi one-dimensional hole semiconductor with the indirect fundamental gap of 1.66 eV and with a possibility for the uv-excited quasi one-dimensional electron photoconductivity. The physical source for such properties is the charge transfer from the phosphate to the water molecule and cytosine residue, favored by the strong electrostatic interaction between nucleotide zwitterions and by the formation of the infinite spirals of hydrogen-bonded zwitterions along one of the crystallographic axes. © 1994 John Wiley & Sons, Inc.
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  • 124
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    Biopolymers 34 (1994), S. 969-973 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: One of the dilemmas in predicting the secondary structure of proteins from their amino acid propensity for a given conformation is the presence of all amino acids in all types of secondary structure, regardless of their propensity for that specific structure. One explanation is the nucleation hypothesis that only a few residues with a strong propensity for the secondary structure, such as the α-helix structure, initiates its formation and propagates the structure through indifferent sequences until strong breakers terminate the growth on both ends. Eight 15-mer peptides were studied to examine the α-helix nucleation hypothesis. The nucleation sequence of VAEAK, with high helix propensity, was mixed with an indifferent sequence of TSDSR in all possible permutations. From the percent α-helix structure derived from the CD at 222 nm, it appears that helicity does not propagate through the indifferent sequence. © 1994 John Wiley & Sons, Inc.
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  • 125
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    Biopolymers 34 (1994), S. 1001-1005 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Cooperative phenomena in biological macromolecules arise from the interaction of many distinct subsystems, such as structural domains or binding sites. Cooperative properties of the system as a whole, like protein folding or allosteric transitions, are subject to the restrictions imposed by thermodynamic stability. These restrictions, however, do not apply in the case of individual subsystems open to interactions with the rest of the macromolecule. The site-specific properties of such subsystems can be understood in general thermodynamic terms from those of a multicomponent system under particular conditions. The analogy provides a thermodynamic basis for site-specific Cooperativity. © 1994 John Wiley & Sons, Inc.
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  • 126
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    Biopolymers 34 (1994), S. 1037-1048 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In order to investigate the conformational preferences to elicit tastes, conformational free energy calculations using an empirical potential (ECEPP/2) and the hydration shell model were carried out on the L-aspartyl dipeptide methyl esters, L-+HAsp--L-Xaa-OMe, in the hydrated state, where Xaa includes sweet (Phe, Tyr, Met, and Gly), bitter (Ala, Trp, Val, Leu, and Ile), and tasteless (Ser, Thr, and Abu) residues. The refined preferred conformation of the Phe dipeptide (aspartame) with side chain χ21 conformation g- is g-Fg- in the hydrated state, which is consistent with the structure deduced from 1H-nmr experiments. Irrespective of the Xaa and taste, all the dipeptides have the same conformation for the Asp residue, which is attributable to the hydrogen bond between protonated amino hydrogen and carboxylate oxygen and the favored hydration of the carboxylate group. This implies that the L-aspartyl residue is a necessary factor for the dipeptides to be sweet not a sufficient factor. The computed conformational preferences for sweet, bitter, and tasteless dipeptides in the hydrated state indicate to us that the conformation about the N—Cα bond of the Xaa residue, i.e., the orientation of the hydrophobic moiety with respect to the AH/B functionalities in the aspartyl moiety, seems to be crucial to elicit the tastes. In addition, the hydrophobicity and the size of the Xaa residue are found to play a major role in determining the tastes. These well accord with the related works reported previously. © 1994 John Wiley & Sons, Inc.
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  • 127
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    Biopolymers 34 (1994), S. 1059-1064 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The comparative interaction of Mg2+ and Ca2+ counterions on carboxyl groups of polygalacturonic acid is developed. Ultracentrifugation, conductimetry, potentiometry, and CD were used in this work. Evidence is provided for a simple electrostatic interaction of Mg2+ counterions; on the opposite side, cooperative interaction of Ca2+ counterions is again demonstrated, causing chain-chain association. © 1994 John Wiley & Sons, Inc.
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  • 128
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    Topics: Chemistry and Pharmacology
    Notes: Nuclear magnetic resonance and optical experiments are combined to determine the rms amplitude of local angular motion of purines in DNA in solution. A 12 base-pair duplex DNA with the sequence d (CGCGAATTCGCG)2 is deuterated at the H8 positions of adenine and guanine by exchange with solvent dklstwxzat 55°C. The deuterium nmr spectrum of this DNA is measured at 30 mg/mL at 30°C in an 11.76 Tesla magnet (76.75 MHz). The time-resolved fluorescence polarization anisotropies (FPA) of this same sample and also a greatly diluted sample (0.215 mg/mL) were measured after addition of ethidium. FPA measurements of the dilute sample yield the hydrodynamic radius, RH = 9.94 ± 0.2 Å, while those at the nmr concentration are employed to characterize the collective motions in terms of either an enhanced viscosity or dimer formation. The rms amplitude of local angular motion was determined by analyzing the 2H-nmr spectrum, in particular the line width, using recently developed theory for the transverse relaxation rate (R2Q) together with essential information about the collective motions from these and other optical studies. When the principal-axis frame of the electric field gradient tensor is assumed to undergo overdamped libration around each of its three body-fixed axes in an isotropic deflection potential, then the rms amplitude of local angular motion around any single axis is found to lie in the range 10°-11°, provided the high DNA concentration acts to enhance the viscosity, and is about 9°-11°, if it acts to produce end-to-end dimers. The proton nmr relaxation data of Eimer et al. are reanalyzed and shown to yield an rms amplitude of angular motion of the cytosme H5-H6 internuclear vector of 9°-10°, depending upon its orientation with respect to the helix axis. In all of these analyses, full account is taken of the collective twisting and bending deformations, which have a small but significant effect on the results. It is shown that the rms amplitudes of local angular motion do not depend strongly on the model (potential), provided that isotropic rotation around the same number of axes is allowed and that one compares rms angles of the same dimensionality. The rms amplitudes of local angular motion in solution are comparable to those observed for the same sequence at low levels of hydration in the solid state. © 1994 John Wiley & Sons, Inc.
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  • 129
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    Biopolymers 34 (1994), S. 1155-1163 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By use of a combination of 1H nuclear Overhauser effect measurements, restrained molecular dynamics simulations, and 13C spin-lattice relaxation time measurements, the solution behavior of the glycan moiety of a complex glycoinositol phospholipid termed G1PL-6, from the protozoan parasite Leishmania major has been determined. The glycan moiety of GIPL-6 has the following structure, which is characterized by the presence of an internal β-galactofuranose residue: The glycan does not adopt a single conformation in solution, due to significant torsional variations about the two phosphodiester linkages and certain glycosidic linking in the molecule. The present of the internal galactofuranose residue results in an average solution conformation of the oligosaccharide, which resembles a “hairpin,” with the galactofuranose residue at the apex. © 1994 John Wiley & Sons, Inc.
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  • 130
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    Biopolymers 34 (1994), S. 1213-1219 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A molecular mechanics study (grid search and energy minimization) of the highly δ receptor-selective δ opioid antagonist H-Tyr-Tic-Phe-OH (TIP; Tic: tetrahydroisoquinoline-3-car-boxylic acid) resulted in four low energy conformers with energies within 2 kcal/mol of that of the lowest energy structure. These four conformers contain trans peptide bonds only and represent compact structures showing various patterns of aromatic ring stacking. The centrally located Tic residue imposes several conformational constraints on the N-terminal dipeptide segment; however, the results of molecular dynamics simulations indicated that this tripeptide still shows some structural flexibility, particularly at the Phe3 residue. Analogous studies performed with the structurally related μ receptor-selective μ agonist H-Tyr-D-Tic-Phe-NH2 resulted in low energy structures that were also compact but showed patterns of ring stacking different from those obtained with TIP. Superim-position of low energy conformers of TIP and H-Tyr-D-Tic-Phe-NH2 revealed that the Phe3 residues of the L-Tic- and the D-Tic peptide were always located on opposite sides of the plane defined by the Tic residue, thus providing an explanation for the distinct activity profiles of the two compounds in structural terms. Attempts to demonstrate spatial overlap between the pharmacophoric moieties of low energy conformers of TIP and the nonpeptide δ antagonist naltrindole were made by superimposing either the Tyr1 and Tic2 aromatic rings and the N-terminal amino group or the Tyr1 and Phe3 aromatic rings and the N-terminal amino group of the peptide with the corresponding aromatic rings and nitrogen atom in the alkaloid structure. In each case a low energy structure of TIP was found that showed good spatial overlap of all three specified pharmacophoric groups. These two conformers may represent candidate structures for the δ receptor-bound conformation of TIP. © 1994 John Wiley & Sons, Inc.
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    Biopolymers 34 (1994), S. 625-638 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Isoenergy surfaces were calculated for the α- and β-anomers of isomaltose and gentiobiose, based on 46,656 conformers for each disaccharide. Low-energy regions exist for each of the three staggered positions about the C-5′ — C-6′ bonds, and known crystal structures lie in two of these regions. As expected, the molecular partition function showed greater flexibility for these three-bond-linked disaccharides than for comparable two-bond-linked structures. A model miniature crystal of gentiobiose accounts for most of the remaining structural differences between the modeled isolated molecule and the crystal structure. Based on models of isolated molecules of isomaltose and gentiobiose, the predicted Boltzmann-weighted nmr coupling constants were satisfactory, as were predicted optical rotations for gentiobiose. © 1994 John Wiley & Sons, Inc.
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  • 132
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    Biopolymers 34 (1994), S. 565-597 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A combination of detailed energy minimization and molecular dynamics studies of closed circular DNA offers here new information that may be relevant to the dynamics of short DNA chains and/or low superhelical densities. We find a complex dependence of supercoiled DNA energies and geometries on the linking number difference ΔLk as physiological superhelieal densities (|σ| ∼ 0.06) are approached. The energy minimization results confirm and extend predictions of classical elasticity theory for the equilibria of elastic rods. The molecular dynamics results suggest how these findings may affect the dynamics of super-coiled DNA.The minimization reveals sudden higher order configurational transitions in addition to the well-known catastrophic buckling from the circle to the figure-8. The competition among the bending, twisting, and self-contact forces leads to different families of supercoiled forms. Some of those families begin with configurations of near-zero twist. This offers the intriguing possibility that nicked DNA may relax to low-twist forms other than the circle, as generally assumed. Furthermore, for certain values of ΔLk, more than one interwound DNA minimum exists. The writhing number as a function of ΔLk is discontinuous in some ranges; it exhibits pronounced jumps as ΔLk is increased from zero, and it appears to level a characteristic slope only at higher values of ΔLk. These findings suggest that supercoiled DNA may undergo systematic rapid interconversions between different minima e both close in energy and geometry.Our molecular dynamics simulations reveal such transitional behavior. We observe the macroscopic bending and twisting fluctuations of interwound forms about the global helix axis as well as the end-over-end tumbling of the DNA as a rigid body. The overall mobility related to |σ| and to the bending, twisting, and van der Waals energy fluctuations. The general character of molecular motions is thus determined by the types of energy minima found at a given ΔLk. Different time scales may be attributed to each type of motion: The overall chain folding occurs on a time scale almost an order of magnitude faster than the end-over-end tumbling. The local bending and twisting of individual chain residues occur at an even faster rate, which in turn correspond to several cycles of local variations for each large-scale bending and straightening motion of the DNA. © 1994 John Wiley & Sons, Inc.
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    Biopolymers 34 (1994) 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Biopolymers 34 (1994), S. 1349-1358 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: DNA molecules ranging in size from 1 to 630 kilobase pair and intercalated with either ethidium bromide (EtBr) or propidium iodide (PI) were electrophoresed in 1% agarose at four different electric field strengths. The extent of intercalation of EtBr under the conditions of our electrophoresis experiments was determined by a spectroscopic technique, whereas the extent of intercalation of PI was inferred from previous studies. The effects of the increase in DNA contour length and the concomitant decrease of linear charge density were separated based on our analysis of the mobility data. We conclude that the main factor responsible for the reduced electrophoretic mobility of intercalated DNA is the diminished linear charge density and not the increased contour length. © 1994 John Wiley & Sons, Inc.
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  • 135
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    Topics: Chemistry and Pharmacology
    Notes: The optical rotation of methyl 3-O -(α-D-mannopyranosyl)-α-D-mannopyranoside is calculated semiempirically as a function of the linkage dihedral angles φ (H1-C1-O1-C3′) and ψ (C1-O1-C3′-H3′). Comparison with the observed optical rotation in aqueous solution indicates the existence of at least two conformers in solution, which implies a degree of linkage flexibility. The result is in agreement with some, but not all, calculated potential energy surfaces, and with recently published nmr data. © 1994 John Wiley & Sons, Inc.
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  • 136
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    Topics: Chemistry and Pharmacology
    Notes: The fully blocked pentapeptide Tfa-(Deg)2-L-Abu-(Deg)2-OtBu (Tfa:triflouroacetyl; Deg: Cα,α-diethylglycine; OtBu: tert-butoxy) adopts in the crystal state a regular, right-handed 310-helical structure stabilized by three N — H … O = C intramolecular 1 ← 4 (or C10) H bonds, as determined by an x-ray diffraction analysis. However, a Fourier transform ir absorption and 1H-nmr study strongly supports the view that in deuterochloroform solution the four Deg residues at both termini of the peptide main chain are involved in successive, fully extended C5 forms. A comparison with the stable, fully developed, multiple C5 conformation of Tfa-(Deg)5-OtBu indicates that incorporation of an Abu guest residue, interrupting the side-chain uniformity of the host (Deg)5 homopeptide, while altering only marginally the conformation in a solvent of low polarity, is responsible for a dramatic perturbation of the crystal-state structure. © 1994 John Wiley & Sons, Inc.
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  • 137
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A single-crystal x-ray diffraction analysis of Boc-L-Ala-D-aIle-L-Ile-OMe has been carried out. The analysis has shown (a) that the tripeptide molecules have in part an α-extended conformation, the torsion angles of the L-Ala and D-aIle residues being ϕ1 = -75.1° and ψ1 = -25.8° and ϕ2 = 67.3° and ψ2 = 44.1°, respectively, and (b) that the molecules are organized in rippled planes where they occur in relative antiparallel orientation linked together side by side by H bonds. This molecular organization of the tripeptide corresponds closely to that of an antiparallel α-pleated sheet, and likely constitutes the first example of a structure of this kind for which a characterization at the atomic level has been achieved. A molecular dynamics study has shown that the molecular conformation of the tripeptide in the crystalline state is determined primarily by intermolecular interactions. © 1994 John Wiley & Sons, Inc.
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    Biopolymers 34 (1994), S. 1483-1493 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present an analysis of the response of native DNA solutions to well-defined elongational flow fields. At low strain rates the DNA duplex behaves as an expanded coil. It shows a noncritical coil-stretch transition, suggesting relatively little hysteresis of the relaxation time. On the other hand, the relaxation time is consistent with a nonfree draining coil. At higher strain rates we observe midpoint scission. This has been modeled very successfully as a thermomechanically activated process. Scission occurs at hydrolyzable weak linkages along the constituent strands. Complete scission of the DNA helix is, however, considerably less prevalent than would be expected given the low stability of the constituent strands. We speculate upon the molecular origin and biological consequences of this enhanced stability. © 1994 John Wiley & Sons, Inc.
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  • 139
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present paper we describe the synthesis, purification, single crystal x-ray analysis, and solution structural characterization by nmr spectroscopy, combined with restrained molecular dynamic simulations, of the cyclic hexapeptide cyclo-(Pro-Phe-β-Ala-Phe-Phe-β-Ala). The peptide was synthesized by classical solution methods and the cyclization of the free hexapeptide was accomplished in good yields in diluted methylenechloride solution using N, N-dicyclohexyl-carbodiimide. The compound crystallizes in the monoclinic space group P21 from methanol/ethyl acetate. The molecule adopts in the solid state a conformation characterized by cis β-Ala6-Pro1 peptide bond. The α-amino acid residues are at the corner positions of turned structures. The Pro1-Phe2 segment is incorporated in a pseudo type I β-turn, while Phe4-Phe5 is in a typical type I β-turn. Assignment of all 1H and 13C resonances was achieved by homo- and heteronuclear two-dimensional techniques in dimethylsulfoxide (DMSO) solutions. The conformational analysis was based on inter-proton distances derived from rotating frame nuclear Overhauser effect spectroscopy spectra and homonuclear coupling constants. Restrained molecular dynamic simulation in vacuo was also performed to built refined molecular models. The molecule is present in DMSO solution as two slowly interconverting conformers, characterized by a cis-tran isomerism around the β-Ala6-Pro1 peptide bond. This work confirms our expectations on the low propensity of β-alanyl residues to be positioned at the corners of turned structure. © 1994 John Wiley & Sons, Inc.
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  • 140
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    Biopolymers 34 (1994), S. 1647-1657 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The pore-lining M2 helix of the nicotinic acetylcholine receptor exhibits a pronounced kink when the corresponding ion channel is in a closed conformation [N. Unwin (1993) Journal of Molecular Biology, Vol. 229, pp. 1101-1124]. We have performed molecular dynamics simulations of isolated 22-residue M2 helices in order to identify a possible molecular origin of this kink. In order to sample a wide range of conformational space, a simulated annealing protocol was used to generate five initial M2 helix structures, each of which was subsequently used as the basis of 300 ps MD simulations. Two helix sequences (M2α and M2δ) were studied in this manner, resulting in a total often 300 ps trajectories. Kinked helices present in the trajectories were identified and energy minimized to yield a total of five different stable kinked structures. For comparison, a similar molecular dynamics simulation of a Leu23 helix yielded no stable kinked structures. In four of the five kinked helices, the kink was stabilized by H bonds between the helix backbone and polar side-chain atoms. Comparison with data from the literature on site-directed mutagenesis of M2 residues suggests that such polar side-chain to main-chain H bonds may also contribute to kinking of M2 helices in the intact channel protein. © 1994 John Wiley & Sons, Inc.
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  • 141
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Helmholtz free energy F (rather than the energy) is the correct criterion for stability; therefore, calculation of F is important for peptides and proteins that can populate a large number of metastable states. The local states (LS) method proposed by H. Meirovitch [(1977) Chemical Physics Letters, Vol. 45, p. 389] enables one to obtain upper and lower bounds of the conformational free energy, FB (b, l) and FA (b, l), respectively, from molecular dynamics (MD) or Monte Carlo samples. The correlation parameter b is the number of consecutive dihedral or valence angles along the chain that are taken into account explicitly. The continuum angles are approximated by a discretization parameter l; the larger are b and l, the better the approximations; while FA can be estimated efficiently, it is more difficult to estimate FB. The method is further developed here by applying it to MD trajectories of a relatively large molecule (188 atoms), the potent “Asp4-Dpr10” antagonist [cyclo(4/10)-(Ac-Δ3Pro1-D-pFPhe2-D-Trp3-Asp4-Tyr-5-D-Nal6-Leu7-Arg8-Pro9-Dpr10-NH2)] of gonadotropin releasing hormone (GnRH). The molecule was simulated in vacuo at T = 300 K in two conformational states, previously investigated [J. Rizo et al. Journal of the American Chemical Society, (1992) Vol. 114, p. 2860], which differ by the orientation of the N-terminal tail, above (tail up, TU) and below (tail down. TD) the cyclic heptapeptide ring. As in previous applications of the LS method, we have found the following: (1) While FA is a crude approximation for the correct F, results for the difference, ΔFA = FA(TD) - FA(TU) converge rapidly to 5.6(1) kcal/mole as the approximation is improved (i.e., as b and l are increased), which suggests that this is the correct value for ΔF; therefore TD is more stable than TU. (The corresponding difference in entrophy. TΔSA = 1.3(2) kcal/mole, is equal to the value obtained by the harmonic approximation.) (2) The lowest approximation, which has the minimal number of local states, i.e., based on b = 0 (no correlations) and l = 1 (the angle values are distributed homogeneously), also leads to the correct value of ΔF, within the error bars. This is important since the lowest approximation can be applied even to large proteins. (3) The method enables one to define the entropy of a part of the molecule and thus to measure the flexibility of this part. We have verified that the results for T[SA(TU) - SA(TD)] of the tail alone converged to 2.4(1) kcal/mole, which demonstrates the relatively high flexibility of the tail in the TU state. In order to study the random coil state, the Asp4-Dpr10 analogue and its linear version were simulated by MU at 1000 K. We have been able to calculate a lower bound, ∼ 25 kcal/mole for T[S(linear) - S(cyclic)], which is the reduction in the conformational entropy caused by the ring closure. © 1994 John Wiley & Sons, Inc.
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  • 142
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    Chemie in unserer Zeit 28 (1994), S. 301-308 
    ISSN: 0009-2851
    Keywords: Chemistry ; Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 143
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: β-Nitrostyrene derivatives of adenosine 5′-glutarates are potent and selective bisubstrate-type inhibitors of the epidermal growth factor receptor protein tyrosine kinase (EGF-R PTK). In an attempt to improve the inhibitory activity, this type of compounds was modified with alkyl spacers of varying length between the nitrostyrene and the glutaryl units. The spacers consisted of 1, 3, 4, and 5 atoms to give compounds of the benzyl, oxyethyl, oxypropyl, and oxybutyl series, respectively (Schemes 1 and 2). Adenosine 5′-esters were prepared in the benzyl and oxypropyl series only. Compared to the compounds in the parent series without spacer (IC50 = 0.7-12 μM), most of the modified compounds inhibited the EGF-R PTK only marginally or were inactive (IC50 ≥ 100 μM). The only exceptions were the free acids 19 and 20 with IC50 values of ca. 5 μM. It is noteworthy that esterification of these two hydrogen glutarates with either MeOH or adenosine yielded inactive compounds, which is in contrast to the corresponding substances without spacers.
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  • 144
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Synthesis and Characterization of the Furo and Thieno Analogues of the Triester of PQQWe report here the synthesis and properties of the furo and thieno analogues of 4,5-dihydro-4,5-dioxo-1H-pyrrolo[2,3-f]quinoline-2,7,9- tricarboxylic acid ( = PQQ), i.e. the furo- and thieno[2,3-f]quinoline-4,5-quinone (FQQ and TQQ, resp.) derivatives B and C, obtained as triesters. The triester of PQQ derivative A is much more stable than the triesters of B or C, and only the triester of A shows strong activity in nonenzymatic catalytic oxidations.
    Additional Material: 1 Tab.
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  • 145
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    Helvetica Chimica Acta 77 (1994), S. 171-181 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conversion of the conformation of cyclosporin A (CsA) observed in CHCl3 to the receptor-bound state is investigated by two molecular-mechanics methods, template forcing and dynamic forcing. The conformations of CsA in CHCl3 and complexed with LiCl in THF as determined by NMR are used as starting structures. The transition starting from the CsA/CHCl3-derived conformation is hindered by steric interactions of two side chains (MeBmt1 and Val5). While starting with the CsA/LiCl-derived conformation, the conversion is facile. It is illustrated that these calculations, which are of artificial character, using only the starting and final structures of the observed conformational transition during the receptor-binding event, allow an insight into the interactions between the substrates and receptor in terms of an induced fit.
    Additional Material: 6 Ill.
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  • 146
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    Helvetica Chimica Acta 77 (1994), S. 231-242 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The transfer properties of the ionic species involved in the Williamson ether synthesis by phase-transfer catalysis were investigated using electrochemical techniques developed for the study of polarised liquid/liquid interfaces. This approach allows the measurement of the apparent partition coefficients of the transferring species. From these data, it is proposed that the role of the phase-transfer catalyst salt in the reaction mechanism is to establish a Galvani distribution potential difference between the two phases which in turn acts as the driving force for transferring the reactive aqueous ions to the organic phase.
    Additional Material: 5 Ill.
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  • 147
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The (R)- and (S)-5-(hydroxymethyl)-3-isopropyloxazolidin-2-ones, ((R)- and (S)-2, resp.), pivotal intermediates in the preparation of optically active β-blockers, were synthesized using (R,E)-2-hydroxypent-3-enenitrile (1) as the chiral starting material. In the synthesis of (R)-2, a known cyclization/inversion step was applied.
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  • 148
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Solutions (2 ml) of small linear and cyclic peptides (4-11), of a peptolide containing nine amino acids and a lactate moiety (12), of the cyclic undecapeptide cyclosporin A (CS, 1), and of the macrolides ascomycin, fujimycin, and rapamycin (13-15) in THF were added to excess LiCl, LiBr, or LiClO4 (up to 3000 equiv. in 40 ml THF) in a calorimeter (calorimetric titration). The enthalpies of interaction measured are in the range of ΔH = -8 to -37 kcal/mol. A similar experiment was carried out with one of the binding proteins of cyclosporin, the human cyclophilin A, to give the thermodynamic parameters for the complexation ΔH = -16, ΔG° = -10 kcal/mol, and ΔS° = -20 cal/mol·deg. at 25° which corresponds to an equilibrium constant K = 2·107 l/mol, in good agreement with the result of independent measurements using different methods. NMR Measurements of the macrolides in (D8)THF containing LiCl show strong down-field shifts of signals of the H-atoms next to C=O and C-OH groups in these molecules.
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  • 149
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The 17O-NMR signals of four true C-nitroso compounds 1-4 appear at particularly low field (1550-1265 ppm), whereas the dimers (azodioxy type) resonate at ca. 400 ppm and the ‘isonitroso compounds’ ( = quinone-oximes; 5 and 6) at ca. 250 ppm. S-Nitroso compounds ( = thionitrites; 8 and 9) show shift values of ca. 1300 ppm, not far from C - NO; the NO+ ion is much stronger shielded (474 ppm). The results, together with those for higher-shielded nitroso compounds X - NO (X = RO, R2N, Cl, O-) are discussed in terms of (a) resonance stabilization through n-donation from X(π-bond order, approximated by the known barriers of rotation around the X - N bond) and of (b) electronic excitation energies ΔE. The latter are approximated by long-wave (symmetry-forbidden) UV/VIS absorptions and confirmed, where available, by the maxima of the curves of circular dichroism (CD); the CD curve of thionitrite 9 has been measured. It is found that the δ(17O) values of X - NO depend both on bond order and on ΔE, which could not be separated. The higher shielding of NO+ compared with X - N=O is explained on the basis of anisotropy effects, which differ between sp and sp2 systems.
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  • 150
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    Helvetica Chimica Acta 77 (1994) 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 151
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: (1S,2R,6R,7R)-4-Phenyl-3,10-dioxa-5-azatricyclo[5.2.1.02,6]dec-4-en-9-one ((+)-5) obtained in 6 steps from the Diels-Alder adduct of furan to 1-cyanovinyl (1S)-camphanate ((+)-3) was reduced to the corresponding endo-alcohol (-)-6 the treatment of which with HBr/AcOH provided (-)-(3aS,4S,6R,7S,7aR)-4β-bromo-3aβ,4,5,6,7,7aβ-hexahydro-2-phenyl-1,3-benzoxazole-6β,7α-diyl diacetate ((-)-17). Elimination of HBr with 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) and acidic hydrolysis furnished (-)-(1R,2S,3R,4R)-4-aminocyclohex-5-ene-1,2,3-triol ( = (-)-conduramine C1;(-)-1).
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  • 152
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    Helvetica Chimica Acta 77 (1994), S. 10-22 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 2′-5′ Adenylate trimers 41-44 carrying the (tert-butyl)dimethylsilyl (tbds) group at the 3′-OH position of various sugar moieties were synthesized via the phosphoramidite method. The use of the (tert-butyloxy)carbonyl (boc) and 2-(4-nitrophenyl)ethylsulfonyl (npes) groups for 2′-OH protection in neighbourhood to the 3′-O-tbds residue was compared during the synthesis of the target trimers. For other functional positions, the use of the 2-(4-nitrophenyl)ethyl (npe) and 2-(4-nitrophenyl)ethoxycarbonyl (npeoc) blocking groups were favoured.
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  • 153
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new and generally applicable synthetic path for the preparation of heteroditopic bis-macrocycles using tri-N-protected tetraazacycloalkanes as building blocks and bromoacetyl bromide as bridging reagent is described. In the first step, bromoacetyl bromide is used as acylating agent for one of the macrocycles, whereas in the second step it is used as alkylating agent for the second macrocycle, thus giving protected bis-macrocyclic amides (e.g. 6). After reduction of the amide moiety and deprotection, bis-azamacrocycles with an ethylene bridge are obtained (e.g. 8). The corresponding homoditopic bis-macrocycles 16 and 17 are also prepared for comparison purpose. Spectrophotometric studies indicate that bis-macrocycle 8, which consists of a 12- and a 14-membered ring, binds two metal ions with equal affinity, whereas compound 13, in which an unsubstituted (cyclam) and a trimethyl-substituted tetraazacyclotetradecane unit (Me3cyclam) are bridged, shows selective metal-ion binding. The first metal ion is always incorporated into the cyclam unit, whereas the second one binds to the Me3cyclam macrocycle. Thus, by sequential addition of two different metal ions, heterobinuclear complexes can easily be prepared. The electrochemistry of the binuclear Ni2+ complexes, studied by CV and DPV, as well as the EPR spectra of the binuclear Cu2+ complexes clearly indicate metal-metal interactions.
    Additional Material: 10 Ill.
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  • 154
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Flash-vacuum thermolysis of the four diastereoisomeric 5,6-epoxy-5,6-dihydro-caryophyllenes 1-4 at 500-550°/0.1-0.7 Torr leads to the hitherto unreported enantiomers of (6RS,7RS)- and (6RS,7SR)-6,7-epoxy-6,7-dihydro-β-farnesenes ((±)-5 and (±)-6, resp.). In particular, (+)-5 is formed in 45% yield (ca. 90% ee) and is, thus, an attractive chiral building block for natural-product synthesis.
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  • 155
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A series of ceramides, called oceanapins A-F (2-7), which are unique for branching at both the sphingosine and fatty-acid chains, have been isolated as pure compounds from the haplosclerid sponge Oceanapia cf. tenuis of the Coral Sea. Following acid hydrolysis, both the fatty-acid and the sphingosine portions were obtained separately, which allowed their unequivocal structural definition. The absolute configuration was secured via protection of C(1′)-OH and Mosher's esterification at C(3′)-OH of the oceanapins.
    Additional Material: 1 Tab.
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  • 156
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The one-electron transfer to large π-delocalized hydrocarbons provides an interesting possibility to crystallize solvent-separated ion-pair salts containing optimally solvated cations. Accordingly, the reduction of 9,10-diphenylanthracene in aprotic THF solution at a sodium metal mirror allows to grow dark-blue prismatic crystals of its radical anion and sixfold THF-solvated sodium cation. The structure of the radical anion is very similar to that recently published for the neutral molecule. According to AM1 hypersurface calculations based on the structural data, the phenyl twist angles obviously must be determined by lattice packing, and the negative charge is delocalized predominantly within the anthracene π system. The counter cation [Na⊕(THF)6], reported ordered for the first time, shows nearly octahedral coordination within a rather densily packed solvent shell. Due to the strong repulsions between the solvent molecules, its isodesmically calculated solvation enthalpy is smaller than that of the analogous dimethoxyethane complex [Na⊕(DME)3].
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  • 157
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    Helvetica Chimica Acta 77 (1994), S. 86-91 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 14N- and 1H-Coupling constants, determined by ESR, ENDOR, and general-TRIPLE-resonance spectroscopy, are reported for the radical cations of tetrazinodi(heteroarenes) 1-8. The results comply with the expectation that donor properties of these compounds are mainly due to the electron-rich dihydrotetrazine ring.
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  • 158
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    Helvetica Chimica Acta 77 (1994), S. 70-85 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The biphenyl-containing pseudo-amino acids 2′-(aminomethyl)biphenyl-2-carboxylic acid (Abc; 1) and 2′-(aminomethyl)biphenyl-2-acetic acid (Aba; 2) are used as rigid spacers in the backbone of the cyclic peptides cyclo (-Abc-Ala-Phe-Gly-)2 (5), cyclo(-Abc-Ala-Val-Gly-)2 (6), cyclo(-Aba-Gly-Phe-Ala-)2 (7), and cyclo(-Aba-Ala-Phe-Gly-)2(8). Three different interconverting diastereoisomers are found in solutions of each of these cyclopeptides due to the atropisomerism of the biphenyl units. NMR Techniques and molecular-dynamics calculations allow to conclude that the major diastereoisomer of 5 (and 6) in (D6)DMSO adopts a β-sheet conformation. It is proposed that the pseudo-amino acid 1 of (R)-chirality forms, with attached L-amino acids, a H-bonding pattern comparable to a β-turn (see D in Fig. 4 and F).
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  • 159
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    Helvetica Chimica Acta 77 (1994), S. 92-99 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Vitamin-B12-Catalyzed C, C-Bond Formation: Synthesis of Jasmonates via Sequential Radical ReactionThe Cbl-catalyzed electroreduction of 3-(2′-bromo-1′-ethoxyethoxy)cyclopenten (1a) in presence of 1-cyanovinyl-acetate (8) gave, in a sequential radical reaction (5-exo-trig-cyclization of 1a followed by addition to 8), 1-cyano-2-(2′-ethoxy-hexahydro-2′H-cyclopenta[b] furan-4′-yl)ethyl acetate (10a). This intermediate was transformed to methyl jasmonate (7; four steps) and epituberolide (9; three steps) in 20 and 31% yield, respectively, from cyclopent-2-en-l-ol.
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  • 160
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    Helvetica Chimica Acta 77 (1994), S. 111-120 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Synthesis of Azaisomers of the Triester of PQQ: 3H-Pyrrolo[3,2-f]-, 1H-Pyrrolo[3,2-h]-, and 7H-Pyrrolo[2,3-h]quinolinequinone DerivativesWe describe here the synthesis of the title compounds 3-5, starting from highly substituted aminoindoles. The annelated pyridine rings were built up in each case with dimethyl 4-oxoglutaconate according to Corey's procedure. All three o-quinone derivatives 3-5 are stable compounds, comparable to PQQ-triester. The azaisomers vary in biological activity from practically inactive to strong inhibition of the α-amidating enzyme or the ornithin decarboxylase.
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  • 161
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    Helvetica Chimica Acta 77 (1994), S. 608-614 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction of 2-(1-phenylvinyl)aniline and 4-chloro-2-(1-phenylvinyl)aniline with acetophenone derivatives, 1-(naphthalen-1-yl)ethanone and 1-(furan-2-yl)ethanone in toluene at 110-115° with toluene-4-sulfonic acid as a catalyst leads in good-to-excellent yields to the 2,2-disubstituted 1,2-dihydro-4-phenyl-quinolines 1-18 (Scheme 1, Table). The structure of the new racemic 1,2-dihydroquinolines 1-18 is determined by NMR spectroscopy. A reaction mechanism proceeding via a 6π-electrocyclic rearrangement of 2-(1-phenylvinyl)anils 19 as the key step is proposed for the formation of these compounds (Scheme 1). The scope and limitations of the novel methods are discussed (Scheme 2).
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  • 162
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    Helvetica Chimica Acta 77 (1994), S. 622-630 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The 2′-deoxyisoguanosine (1) was synthesized by a two-step procedure from 2′-deoxyguanosine (5). Amination of silylated 2′-deoxyguanosine yielded 2-amino-2′-deoxyadenosine (6) which was subjected to selective deamination of the 2-NH2 group resulting in compound 1. Also 2′,3′-dideoxyisoguanosine (2) was prepared employing the photo-substitution of the 2-substituent of 2-chloro-2′,3′-dideoxyadenosine (4). The latter was synthesized by Barton deoxygenation from 2-chloro-2′-deoxyadenosine (3) or via glycosylation of 2,6-dichloropurine (12) with the lactol 13. Compound 1 was less stable at the N-glycosylic bond than 2′-deoxyguanosine (5). The dideoxynucleoside 2 was deaminated by adenosine deaminase affording 2′,3′-dideoxyxanthosine (17).
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  • 163
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    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A crude hydrate 6 and a crystalline hemiacetal 7 of glyoxylamide 4 were prepared from crotonamide 5 (Scheme 2). Particularly hemiacetal 7, but also 6 and the ‘dimer’ 8 (obtained from 7) may serve as homochiral auxiliaries. The structure of 8 was determined by X-ray analysis. By arenesulfonyl halides, tryptimines 12-14 of 4 were diastereoselectively transformed into spirotricycles 15-17 and 19.
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  • 164
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    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A series of 2′-benzamido-2′-deoxyadenosine analogues were synthesized in an effort to find new lead structures for the treatment of sleeping sickness. The 2′-deoxy-2′-(3-methoxybenzamido)adenosine (1h) was proved to be a selective inhibitor of the parasite glyceraldehyde 3-phosphate dehydrogenase which confirms the modeling studies. The solution-state conformation of 2′-(thiophene-2-carboxamido) analogue 1d demonstrates a 2′-endo conformation, an orientation of the thiophene ring under the ribose moiety, and the base part occupying a ‘syn’/‘anti’ equilibrium.
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  • 165
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    Helvetica Chimica Acta 77 (1994), S. 645-654 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The decomposition of cyclohexyl diazoacetate (5a) in the presence of the chiral [Rh2{(2S)-mepy}4] catalyst leads to a 3:1 cis/trans mixture of bicyclic lactone 6a with an enantiomeric excess of 95-97% (cis) and 90% (trans). The conformationally rigid tert-butyl derivatives 5b and 5c afford, in the presence of the same catalyst, 6b and 6c, respectively, via insertion into the equatorial C—H bonds exclusively, with ee's of ca. 95%. A remarkable degree of induction (92-95%) results in the lactone 6g upon decomposition of 1-isopropyl-2-methylpropyl diazoacetate (5g). The diazoacetates derived from 1-methylcyclohexanol, cyclopentanol and 1-methylcyclopentanol (5d-f) afford under similar conditions insertion products with higher diastereoselectivity, but significantly lower enantioselectivity. Other dirhodium catalysts are less efficient.
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  • 166
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    Helvetica Chimica Acta 77 (1994), S. 661-667 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The first synthesis of (Z)-neomanoalide (4) and an improved synthesis of its (E)-isomer 3 was accomplished in a concise, regiocontrolled manner by exploiting 2-[(tert-butyl)dimethylsiloxy]-4{[(tert-butyl)dimethylsiloxy]-methyl}furan (6) as the key reagent. Lithiation of 6 and subsequent reaction with the (2Z)- or (2E)-isomer of (6E)-3-{[(tert-butyl)dimethylsiloxy]methyl}-7-methyl-9-(2′,6′,6′-trimethylcyclohex-1′-enyl)nona-2,6-dienyl bromide (5), followed by hydrolysis, afforded the corresponding neomanoalide.
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  • 167
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    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The 2,4-bis-functionalized phenol 1 is dehydrogenated regioselectivity with potassium ferricyanide, affording the corresponding p-quinonemethide 2. Hydrolysis of 2 affords a mixture of dithioacetal 5a and benzaldehyde 6; 1,6-addition of thiols to 2 gives the dithioacetals 5 of benzaldehyde 6; reaction of 2 with 2,2′-azobis(isobutyronitrile) (= 2,2′-dimethyl-2,2′-azobis(propanenitrile)) leads to 9a, 9b, and 10, addition products of the 1-cyano-1-methylethyl radical. The structures of all products are confirmed mainly by 1H- and 13C-NMR spectroscopy, and the mode of their formation is discussed.
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  • 168
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational space of the trisaccharide α-L-Fuc-(1→2)-β- D-Gal-(1→3)-β -D-GalNAc-1-OPr (2) and of its component disaccharide moieties α -L-Fuc-(1→2)-β -D-Gal-1-OMe (3) and β -D-Gal-(1→3)-β- D-GalNAc-1-OPr (4) was investigated with the aid of molecular-mechanics energy minimizations and molecular-dynamics simulations. These calculations suggested the occurrence of two conformations for each compound characterized by different φ and Ψ glycosidic angles. However, 1H-NMR investigation of D2O solutions of 2-4 indicated a sure preference for one of the two conformers with a contribution of the other one ranging from negligible to low.
    Additional Material: 7 Ill.
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  • 169
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthesis on solid phase of a new derivative of the anticoagulant protein hirudin is described (see Scheme and Fig.1, I). The henicosapeptide is a bivalent conjugate of the C-terminus of hirudin and of the active-site-binding tetrapeptide D-Phe-Pro-Arg-Pro linked via a tetraglycine spacer. The peptide, for which the name hirufos was coined, incorporates a stable phosphono derivative of L-phenylalanine which, combined with the other structural modifications, leads to a potent anticoagulant agent. Synthesis was readily achieved by the (9H-fluoren-9-yl)-methoxycarbonyl (Fmoc) strategy followed by acidolytic cleavage from the resin and deprotection, including the liberation of the crucial phosphonic group on L-phenylalanine.
    Additional Material: 3 Ill.
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  • 170
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    Helvetica Chimica Acta 77 (1994), S. 691-708 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Tri-o-thymotide (TOT) clathrates are enantiomorphous and enantioselective (chiral cages). It was shown that an external molecular reactant can diffuse into the TOT host crystal lattice and reacts with the included molecule (guest) in characteristic ways, differing from those occurring in liquid solutions. Several aspects of the action of hydrogen halides (HCl, HBr) on the chemical behavior of included oxiranes were investigated for solid-gas and solid-liquid (aqueous) systems. Under well established experimental conditions, these reactions gave regiospecifically one target product and were asymmetric. The included substrate underwent first an acid-catalyzed allylic isomerization that is cage-specific and mostly quantitative. In sheer contrast, strong basic conditions were required to promote, in reduced yield, the analogous transformation in solution. The regiospecificity and enantioselectivity of several intra-crystalline conversions allowed the accurate determination of the absolute configuration of several guest molecules. Kinetic measurements were achieved that disclosed some striking features of this new type of heterogeneous reactions. Tentative models for the cage stereoselective mechanisms are briefly discussed.
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  • 171
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The complex formation by Co2+, Ni2+, Cu2+, Zn2+, and Cd2+ with tris[2-(dimethylamino)ethyl]amine (N(CH2CH2NMe2)3, Me6tren) was investigated at 25° and at an ionic strength of 1, using VIS spectroscopy and potentiometric measurements. The stability constants of these complexes are compared with those of tris(2-aminoethyl)amine (N(CH2CH2NH2)3, tren), obtained under the same conditions. The values of the constants for Me6tren are much lower than those for tren, due to the bulky Me substituents. The values of the constants can be correlated with the ability of the individual metal ions to adopt coordination number 5. This appears to be easier for Cu2+ and Co2+ than for Cd2+ and Zn2+ and is very difficult for Ni2+. The 1:1 complexes [ML(H2O)]2+ are monoprotonic acids whose pKs values are similar or lower than those of the corresponding aquametal ions. The X-ray crystal structure of the copper(II) complex [Cu(SO4)(Me6tren)] · 8H2O reveals pentacoordination at the central ion. The UV/VIS spectra of the aqueous solutions of the Co2+, Ni2+, and Cu2+ 1:1 complexes confirm that the same coordination number is present also in these complexes.
    Additional Material: 5 Tab.
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  • 172
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    Helvetica Chimica Acta 77 (1994), S. 1768-1772 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The structure of peregrine (1), a norditerpenoid alkaloid isolated from Delphinium peregrinum var. elongatum BOISS., was revised on the basis of the 1H-COSY, HMQC, HMBC, and ROESY NMR spectra and of the X-ray analysis of its parent alcohol 2. Some of the 13C-NMR resonances of 1 and the related alkaloids peregrine alcohol (2), 14-O-acetylperegrine (3), bicoloridine (4), bicoloridine alcohol (5), 6-O-acetylbicolorine (6), bicolorine (7), and 14-O-acetylbicolorine (8), were also reassigned.
    Additional Material: 4 Tab.
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  • 173
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The antivirally active 3′-deoxyadenylyl-(2′-5′)-3′-deoxyadenylyl-(2′-5′)-3′-deoxyadenosine (cordycepin trimer core) was modified at the 2′- or 5′-terminus, by attachment of cholesterol via a carbonate bond (→ 15) or a succinate linker (→ 16 and 27) to improve cell permeability. The corresponding monomeric conjugates 4, 7, and 21 of cordycepin were prepared as model substances to study the applicability of the anticipated protecting groups - the monomethoxytrityl (MeOTr), the (tert-butyl)dimethylsilyl (tbds), and the β -eliminating 2-(4-nitrophenyl)ethyl (npe) and 2-(4-nitrophenyl)ethoxycarbonyl (npeoc) groups - for the final deblocking steps without harming the ester bonds of the conjugate trimers. The syntheses were performed in solution using phosphoramidite chemistry. The fully protected trimer conjugates 13, 14, and 26 as well as all intermediates were characterized by elemental analyses, UV and 1H-NMR spectra. The deblocked conjugates 15, 16, and 27 were pure according to HPLC and showed the correct compositions by mass spectra. Comparative biological studies indicated that cordycepincholesterol conjugate trimers 16 and 27 were 333- and 1000-fold, respectively, more potent inhibitors of HIV-1-induced syncytia formation than cordycepin trimer core.
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  • 174
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The pyrophosphoric-acid-analogue phosphonoformic acid (pfa) and the amino-acid-analogue (aminomethyl)phosphonic acid (ampa) both form, in the deprotonated state, i.e., as -OOC-PO32- and H2N—CH2—PO32-, respectively, five-membered chelate rings with metal ions. pfa inhibits both phosphate transport and virus replication, while ampa is a metabolic product of the common herbicide glyphosate ( = N-(phosphonomethyl)glycine). The acidity constants of H2pfa- and H2ampa± as well as the stability constants of the [M(Hpfa)], [M(pfa)]-, [M(Hampa)]+, and [M(ampa)] complexes, where M2+ = Mg2+, Ca2+, Sr2+, Ba2+, Mn2+, Co2+, Ni2+, Cu2+, Cu(2,2′-bipyridyl)2+, Cu(1,10-phenanthroline)2+, Zn2+, or Cd2+, have been determined by potentiometric pH titrations in aqueous solution at 25° and I = 0.1M (NaNO3). The structures of isomeric complexes and the connected intramolecular equilibria are deduced and evaluated based on the equilibrium constants measured and those calculated via the pKa values of the above mentioned ligands and previously established log K vs. pKa straight-line plots (H. Sigel et al., Helv. Chim. Acta 1992, 75, 2634) for a simple phosphonate-M2+ coordination. pfa forms stronger complexes than ampa with all the above mentioned metal ions, with the single exception of [Cu(ampa)] which is slightly more stable than [Cu(pfa)]-. In neutral solutions, more precisely at pH of ca. 6, pfa complexes of alkaline-earth-metal ions retain one phosphonate-bound proton, [M(Hpfa)], while those of the transition-metal ions chelate with the trianionic ligand, pfa3-. In accord with increasing ligand-basicity, the stability-constant order for all metal-ion complexes is oxalate 〉 pfa 〉 pyrophosphate but, owing to proton competition in pyrophosphate, in neutral solutions metal-ion complexation of pfa3- competes with P2O74-. With ampa alkaline-earth-metal ions interact only with the phosphonate group of even the dianionic ligand (though Mg2+ appears to form a low fraction of a [Mg(ampa)] chelate) while transition-metal ions form chelates which are comparable in stability to those of glycinate.
    Additional Material: 4 Ill.
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  • 175
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    Helvetica Chimica Acta 77 (1994), S. 1773-1780 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The crystal structure of the Sb2F11 salt of the 2-phenyladamant-2-yl cation, 1 · Sb2F11, was determined at 183 K (P21/c, R1 = 0.0652, σ(C—C) = 0.02 Å), because earlier published results indicated a charge delocalization from the cationic C(2) into the σ framework (C—C hyperconjugation) and a bending of the C(2) bridge. In the structure of 1, a displacement of the C(2) bridge by 7.8(12)° from the symmetrical position and C—C bond-length deviations from expectation values were found which are in agreement with preferential C—C hyperconjugation on one face of C(2). The interactions of 1 with two Sb2F11 counterions nearest to C(2) also indicate different behaviour of the two faces of C(2). The benzylic resonance in 1 is confirmed.
    Additional Material: 5 Ill.
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  • 176
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The bicyclic monoselenoacetal 7, easily obtained from (±)-7-oxabicyclo[2.2.1]hept-5-en-2-one (6) via a radical addition-acyl migration sequence, was converted to racemic 12-epiprostaglandins 3 and 4. The key intermediate was the all-cis-formyllactone 2b related to Corey lactone (see 12; Scheme 1). The presence of a (tert-butyl)-dimethylsilyl protective group for the 11-OH substituent (prostaglandin numbering) was found to be crucial in avoidingβ -elimination and epimerization during the Wittig-Horner reaction (Scheme 2). Epimerization at C(12) at the formyllactone stage (see 2b) was also possible and gave the known precursor 1b of naturally occurring prostaglandins and analogs.
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  • 177
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    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: While trialkylamines and dialkyl(phenyl)amines do not react with CS2 in the sense of an addition reaction, the analogous phosphines react smoothly. Attempts to interpret the reaction course on the basis of semiempirical, HF, MP2, and MP4 calculations of energy changes failed completely. To understand why Me3P or Me2PhP react so vigorously (liquid phase, 300 K) with CS2, CASSCF and MRSDCI calculations must be carried out.
    Additional Material: 3 Ill.
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  • 178
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    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 0The bipyridyl-armed tetra-p-(tert-butyl)calix[4]arenes 1-5 were synthesized from tetra-p-(tert-butyl)-calix[4]arene A and 6-(bromomethyl)-6′-methyl-2,2′-bipyridine (B) by direct base-strength-driven regioselective O-alkylation or by stepwise procedures. Preliminary complexation studies of the ligands 1-3 with CuI affording the complexes 6-8 are described.
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  • 179
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: (Hydroxymethyl)bilane synthase (HMBS) catalyses the conversion of porphobilinogen (2) into the (hydroxymethyl)bilane derivative 3, a linear tetrapyrrolic intermediate in the biosynthesis of haem, chlorophyll, and related pigments. The conversion involves the sequential formation of four intermediate covalent enzyme-substrate complexes, before the product is released. We analysed the pre-steady-state kinetics of the formation of the complexes, taking advantage of their remarkable chemical stability allowing chromatographic separation. The experimental approach involved the generation of the complexes while HMBS was immobilised on an anion-exchange column. A solution being 0.2 Km in substrate was pumped through the column during a time interval which was varied to sample the pre-steady-state period. Then, the enzyme and enzyme-substrate complexes were eluted and their proportions evaluated. A computer simulation of the pre-steady-state time course, in combination with a χ2 fitting to the experimental data, allowed the specificity constants kcat/Km for the individual steps of the process to be derived. By repeating the analysis with variants of HMBS in which specific amino acids were replaced by others, we demonstrated that it is possible to trace the consequences of amino-acid replacements down to the individual steps of the reaction sequence. Since the positions of the amino acids concerned in the three-dimensional structure were known, detailed structure-function relationships become evident in this way.
    Additional Material: 2 Ill.
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  • 180
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Cyclic oligomers of (R)-3-hydroxyvaleric acid (3-HV) are prepared from the monomer by three different methods, giving various ratios of the oligomers. The macrocycles containing three to twelve 3-HV units (12- to 48-membered rings) are isolated in pure form by chromatography. The triolide 3 can be separated by distillation and isolated on large scale. Biopol, the copolymer of (R)-3-hydroxybutanoic acid (3-HB) and (R)-3-hydroxyvaleric acid (3-HV), is degraded to mixtures of Me- and Et-substituted triolides (‘mixolides’) with high crystallization tendency. The X-ray crystal structures of the tetrolide 4, pentolide 5, hexolide 6, heptolide 7, and of two ‘mixolides’ (with inclusions of solvent) have been determined (Figs. 3-7, 10, and 11) and are compared with those of the corresponding 3-HB derivatives reported previously. From the structural data, a 31 and a 21 helix of 3-HV can be modelled, and the latter one compared with helix structures of P9(3-HB) and P(3-HV) derived from stretch-fibre X-ray scattering. Crystals of a water-containing NaSCN complex of the triethyl triolide 3 were obtained in good quality for X-ray analysis. The structure (Figs. 12, 13, and Table 6) contains an interesting array of C=O and H2O O-atoms around the Na+ ions along a channel-type tube (a-axis of the crystal) which may be relevant to the role of P(3-HB) and P(3-HV) as components of cellular ion channels.
    Additional Material: 13 Ill.
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  • 181
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By conventional peptide-coupling methods (C to N direction; mixed anhydride, bis(2)-oxooxazolidin-3-yl)phosphinoyl chloride (Bop-Cl), or dicyclohexylcarbodiimide (DCC), 2-amino-2-methyl-3-(methylamino)-propionic acid and 2-amino-2-ethyl-3-(methylamino)propionic acid ( = 2-amino-2-[(methylamino)methyl]butanoic acid) are incorporated in the central position of tri-, penta-, and heptapeptides (see 3-7, 21, and 22). The fragment coupling of the β -amino group of the diamino-acid moiety in a tetrapeptide led to partial epimerization, and thus, two epimeric heptapeptide derivatives were actually obtained (7 and epi-7). The final deprotection to the free heptapeptide (involving a Me3SiI cleavage of BocNH and MeOCONH, a saponification with NaOH, and HPLC purification) gave both the desired product (isopeptide 21), with the β -amino group inside the peptide backbone, and a product (peptide 22) of transpeptidation, with the α-amino group of the diamino acid incorporated and a (methylamino)methyl group as the side chain. Peptide 22 is completely converted to the isopeptide 21 by prolonged treatment with base. The heptapeptide 21 was analyzed by elaborate 2QF-COSY and NOESY NMR measurements in H2O/CD3OD at -5° (Table, Fig.); there is no indication for β -sheet or helical structures, a fact which was also confirmed by CD measurements.
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  • 182
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    Helvetica Chimica Acta 77 (1994) 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 183
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    Helvetica Chimica Acta 77 (1994), S. 2070-2070 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 184
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The triphenylstannyl β-D-glucopyranoside 4 was synthesized in one step from the 1,2-anhydro-α-D-glucopyranose 3 with (triphenylstannyl)lithium (Scheme 1). Transmetallation of 4 with excess BuLi, followed by quenching the dianion 7 with CD3OD gave (1S)-1,5-anhydro-3,4,6-tri-O-benzyl-[1-2H]-D- glucitol (8) in 81% yield (Scheme 2). Trapping of 7 with benzaldehyde, isobutyraldehyde, or acroleine gave the expected β-D-configurated products 11, 12, and 13 in good yields. Preparation of C-acyl glycosides from acid chlorides, such as acetyl or benzoyl chloride was not practicable, but addition of benzonitrile to 7 yielded 84% of the benzoylated product 14. Treatment of 7 with MeI led to 15 (30%) along with 40% of 18, C-alkylation being accompanied by halogen-metal exchange. Prior addition of lithium 2-thienylcyanocuprate increased the yield of 15 to 50% and using dimethyl sulfate instead of MeI led to 77% of 15. No α-D-anomers could be detected, except with allyl bromide as the electrophile, which yielded in a 1:1 mixture of the anomers 16 and 17.
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  • 185
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Enantiomerically pure C2-symmetric 1,4-diols embodying bicyclic C-frameworks were synthesized by means of asymmetric carbo-Diels-Alder reactions as key steps (Scheme 1). They were investigated as chiral ligands in the enantioselective addition of ZnEt2 to aromatic aldehydes. In the presence of 20-40 mol-% of the titanates formed from these diols and [Ti(i-PrO)4] at -78°, the respective 1-arylpropanols were obtained with enantiomer ratios up to 93:7 (Scheme 2, Table).
    Additional Material: 1 Tab.
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  • 186
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The oxidative transformation of synthetic (+)-aristoteline ((+)-6) into other metabolites which had been isolated from Aristotelia species was investigated. Thus, treatment of (+)-6 with I2 as the single oxidant furnished the naturally occurring indole alkaloids (+)-makonine ((+)-9),(+)-aristotelinone ((+)-11), or (+)-11, 12-didehydroaristoteline ((+)-7) in good yields, the selectivity of the oxidation process depending on the chosen reaction conditions.
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  • 187
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Preparation and screening of twenty new ligands, all analogs of α,α,α′,α′-tetraaryl-1,3-dioxolane-4,5-dimethanol (TADDOL), for the Ti-catalyzed asymmetric addition of methyltri(isopropoxy)titanium and diethylzinc to benzaldehyde are described. These ligands have the dioxolane ring of the TADDOL's replaced by cyclobutane, cyclopentane, cyclohexene, cyclohexane, bicyclo[2.2.1]heptene and -heptane and bicyclo[2.2.2]octene and -octane moieties; several have H-atoms or alkyl groups in place of the aryl groups, and nine of them have C2 symmetry. X-Ray crystallography and molecular mechanics are used to analyze the structure of the ligands, and two structural features appear to correlate with selectivity: (i) the torsion angle for the chelating O-atom and the ortho-C-atom of the axial Ph group (a small, ca. 19°, angle is optimum, Fig.8) and (ii) the “degree of perpendicularity” of the axial Ph group (Fig. 9). Competition experiments indicate that TADDOL 1a catalyzes both the methyltitanium and diethylzinc additions ≥ 50 times faster than the related dioxolane analogs 12a, 12c, and 12e (Scheme 7), indicating that both axial and equatorial aryl groups (see Footnote 6) are necessary for ligand-accelerated catalysis of these reactions. A refined mechanistic hypothesis is presented (Fig. 10) to explain the selectivities observed for these new ligands. Our analysis suggests that a combination of structural features appear necessary for good catalytic efficiency and high selectivity. These features, especially the rather subtle conformational effects, appear to be optimized (among the ligands tested) in the TADDOL's.
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  • 188
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    Helvetica Chimica Acta 77 (1994), S. 2117-2124 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a theoretical investigation of the structure and reactivity of indole derivatives of tricarbonylchromium(0), we have used two different semi-empirical quantum chemical models derived from the extended Hückel molecular-orbital (EHMO) formalism. The first one, based on the atom-superposition and electron-delocalization (ASED) method, is used to optimize the geometry of the systems; it is shown to lead to results in satisfactory agreement with experiment in the case of the complex for which X-ray structural data are available, the average errors being 0.03-0.05 Å for bond distances and 5° for bond angles. The second one consists of a local reactivity index, made of the intermolecular interaction energy between the organometallic substrate and a model reactant. It is seen that this procedure is able to reproduce the experimental trends as to the most reactive regions of the systems investigated towards nucleophilic and electrophilic addition reactions.
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  • 189
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    Helvetica Chimica Acta 77 (1994), S. 2133-2141 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 1,3-Thiazole-5(4H)-thione oxides 2 were prepared by oxidation of the corresponding 1,3-thiazole-5(4H)-thiones 1 with m-chloroperbenzoic acid (Table 1). Addition reactions of 2 with organolithium and Grignard reagents yielded 4,5-dihydro-4,4-dimethyl-1,3-thiazol-5-yl methyl sulfoxides of type 4 via thiophilic attack (Table 2). Whereas the reaction with the organolithium compounds proceeded with fair-to-excellent yields, the Grignard reagents reacted only very sluggishly. The sulfoxides 4 could also be prepared via oxidation of 4,5-dihydro-4,4-dimethyl-5-(methylthio)-1,3-thiazoles of type 3 with m-chloroperbenzoic acid, together with the corresponding sulfones 5 (Scheme 1).
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  • 190
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The α-D-allo-diol 9 possesses an intramolecular H-bond (HO—C(3) to O—C(1)) in solution and in the solid state (Fig. 2). In solution, it exists as a mixture of the tautomers 9a and 9b (Fig. 3), which possess a bifurcated H-bond, connecting HO—C(2) with both O—C(1) and O—C(3). In addition, 9a possesses the same intramolecular H-bond as in the solid state, while 9b is characterized by an intramolecular H-bond between HO—C(3) and O—C(4). In solution, the β-D-anomer 12 is also a mixture of tautomers, 12a and presumably a dimer. The H-bonding in 9 and 12 is evidenced by their IR and 1H-NMR spectra and by a comparison with those of 3-8, 10, and 11. The expected regioselectivity of glycosidation of 9 and 12 by the diazirine 1 or the trichloroacetimidate 2 is discussed on the basis of the relative degree of acidity/nucleophilicity of individual OH groups, as governed by H-bonding. Additional factors determining the regioselectivity of glycosidation by 1 are the direction of carbene approach/proton transfer by H-bonded OH groups, and the stereoelectronic control of both the proton transfer to the alkoxy-alkyl carbene (in the σ-plane) and the combination of the thereby formed ions (π-plane of the oxycarbenium ion). Glycosidation of 9 by the diazirine 1 or the trichloroacetimidate 2 proceeded in good yields (75-94%) and with high regioselectivity. Glycosidation of 9 and 12 by 1 or 2 gave mixtures of the disaccharides 14-17 and 18-21, respectively (Scheme 2). As expected, glycosidation of 12 by 1 or by 2 gave a nearly 1:1 mixture of regioisomers and a slight preference for the β-D-anomers (Table 4). Glycosidation of the α-D-anomer 9 gave mostly the 1,3-linked disaccharides 16 and 17 (α-D β-D) along with the 1,2-linked disaccharides 14 and 15 (α-D 〈 β-D, 1,2-/1,3-linked glycosides ca. 1:4), except in THF and at low temperature, where the β-D-configurated 1,2-linked disaccharide 15 is predominantly formed. Similarly, glycosidation of 9 with 2 yielded mainly the 1,3-linked disaccharides (1,2-/1,3-linked products ca. 1:3 and α-D/β-D ca. 1:4). Yields and selectivity depend upon the solvent and the temperature. The regioselectivity and the unexpected stereoselectivity of the glycosidation of 9 by 1 evidences the combined effect of the above mentioned factors, which also explain the lack of regio-complementarity in the glycosidation of 9 by 1 and by 2 (Scheme 3). THF solvates the intermediate oxycarbenium ion, as evidenced by the strong influence of this solvent on the regio- and stereoselectivity, particularly at low temperatures, where kinetic control leads to a stereoelectronically preferred axial attack of THF on the oxycarbenium ion.
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  • 191
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Condensation of 3,4-dihydro-6,7-dimethoxyisoquinoline (4) with 4-methylnicotinoyl chloride (12) in refluxing pyridine gives 5,6,13,13a-tetrahydro-2,3-dimethoxy-8H-isoquino[2,1-b][2,7] naphthyridin-8-one (11), along with some of its 13,13a-didehydro derivative 7. A similar reaction of 4 with 4-(chloromethyl)nicotinoyl chloride (14) affords, in addition to 7, the isomeric product 10,11-dihydro-7,8-dimethoxy-13H-pyrido[4′,3′:3,4]pyrrolo[2,1- b][3]benzazepin-13-one (3). Analogous pairs of products are obtained from 3,4-dihydro-6,7-(methylenedioxy)- and 3,4-dihydro-6,7,8-trimethoxy-isoquinolines (15 and 18, resp.). The structure of 3 was established by extensive NMR data and confirmed by single-crystal X-ray studies. Structure 7 has the ring system of the Alangium alkaloids like alangimarinc (1), while the isomeric ring system 3 is predicted to be present in nature on biogenetic reasoning.
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  • 192
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    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 77 (1994), S. 182-193 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We describe the synthesis of short double-stranded DNA fragments (see 4 and 13) which are capped on both ends by an optimally designed linker molecule. The new structures are stable with respect to hybrid dissociation and should have implications in physical studies involving double-stranded DNA as well as in the antisense area for the specific modulation of gene expressions.
    Additional Material: 8 Ill.
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  • 193
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Nucleophilic substitution of 6β-chloro-7,8-didehydro-4,5α-epoxy-3-methoxy-17-methylmorphinan (1) and 8α-bromo-6,7-didehydro-4,5α-epoxy-3-methoxy-17-methylmorphinan (2) with lithium cyano(methyl)- and (aryl)cyanocuprates(I) (5a-c) was accompanied by allylic rearrangement with both change and retention of orientation of the substituting group (Scheme 1, Table 1). Nucleophilic substitution in 7,8-didehydro-4,5α-epoxy-3-methoxy-17-methylmorphinan-6α-yl methanesulfonate (3) and 7,8-didehydro-4,5α-epoxy-3-methoxy-17-methylmorphinan-6β-yl methanesulfonate (4) proceeded without allylic rearrangement with both change and retention of the orientation of the substituting group (Scheme 2, Table 1). X-Ray diffraction studies of the products 6,7-didehydro-4,5α-epoxy-3-methoxy-17-methyl-8α-phenylmorphinan (6b) and 7,8-didehydro-4,5α-epoxy-3-methoxy-17-methyl-6β-phenylmorphinan (7b) were carried out (Figs. 1 and 2).
    Additional Material: 2 Ill.
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  • 194
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 77 (1994), S. 194-202 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Various 2-substituted purine and pyrrolo[2,3-d]pyrimidine 2′-deoxyribonucleosides with methylthio (13a), chloro (13b), methoxy (9b), and oxo (2, 3) substituents at C(2) are prepared. They are obtained either via stereoselective nucleobase-anion glycosylation or by base transformation. A three-step synthesis of the unknown 2′-deoxyisoinosine (2) from 2′-deoxyguanosine (15) is described. Compound 2 as well as its 7-deazapurine derivative 3 exhibit strong fluorescence.
    Additional Material: 4 Tab.
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  • 195
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Use of the 2-dansylethoxycarbonyl ( = 2-{[5-(dimethylamino)naphthalen-1-yl]sulfonyl}ethoxycarbonyl; Dnseoc) group as an intermediate 5′-OH protecting group in oligodeoxyribonucleotide synthesis using the automated phosphoramidite approach is described in a model study to an alternative strategy in RNA synthesis.
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  • 196
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The crystal structure of (-)-corycavinium (+)-10-camphorsulfonate has been investigated by X-ray analysis. The structure of (-)-corycavinium ion ( = (-)-(7S,13S,14R)-5,6,13,13a-tetrahydro-13a-hydroxy-7-methyl-2,3;9,10-bis(methylenedioxy)-8H-dibenzo[a,g]quinolizinium), has been determined. The conformation with B/C-cis-conjunction, a twisted half-chair of ring B, and a half-chair of ring C, as well as α-oriented substituted groups N…Me, C…Me, and C…OH is revealed. Feeding experiments with cell suspension cultures of Corydalis incisa (Papaveraceae) defined the intermediacy of (-)-corycavinium in the route from protoberberine-type to hexahydrobenzo[c]phenanthridine-type of alkaloids. On the basis of the present crystal conformation, the stereospecificity of the relating enzyme is biogenetically considered.
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  • 197
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Symmetrical Azopyridinone Dyes: Synthesis, Spectrophotometrical and Acidobasic Properties, Metal-Complex Formation and Kinetical Investigation of the Azo-Dye FormationThe 13 substituted symmetrical azopyridinone dyes 2a-n were synthesized and their VIS spectra measured. The pK*a values of some dyes and of pyridinone coupling components were determined in MeOH/H2O 64:36. The metal-complex formation of the dyes with Cd2+, Zn2+, Co2+, Ni2+, and Cu2+ was investigated, and complex-formation constants of the 1:1 complexes were determined in H2O for 2k (Table 2) and in dimethylformamide/H2O 1:1 for some other azopyridinone dyes (Table 3). The mechanism of the azo-dye formation was investigated and found to be much more complicated than expected. A mechanism of the coupling reaction was developed (see Scheme 4) and fitted by least-squares calculations.
    Notes: NO ABSTRACT.
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  • 198
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The relation between H-bonding in diequatorial trans-1,2 and axial, equatorial cis-1,2-diols and the regioselectivity of glycosidation by the diazirine 1 was examined. H-Bonds were assigned on the basis of FT-IR and 1H-NMR spectra (Fig. 1). Glycosidation by 1 of the gluco-configurated diequatorial trans-2,3-diols 4-7 yielded the mono-glucosylated products 16/17/20/21 (69-89%); 1,2-/1,3-linked products (37-46:63-54), 24/25/28/29 (60-63%; 1,2-/1,3-linked products 46-51:54-49), 32-35 (69-94%; 1,2-/1,3-linked products 45-52:55-48), and 36/37/40/41 (59-63%; 1,2-/1,3-linked products 52-59:48-41), respectively (Scheme 1, Table 3). The disaccharides derived from 4, 5, and 7 were characterized as their acetates 18/19/22/23, 26/27/30/31, and 38/39/42/43, respectively. Glycosidation of the galacto-configurated diequatorial 2,3-diols 8 and 9 and the manno-configurated diequatorial 3,4-diol 10 by 1 (Scheme 2, Table 3) also proceeded in fair yields to give the disaccharides 44-47 (69-80%;1,2-/1,3-linked products ca. 1:1), 48-51 (51-61%;1,2/-1,3-linked products 54-56:56-54), and 56/57/60/61 (71-80%; 1,3-/1,4-linked products 49-54:51-46), respectively. The 1,3-linked disaccharides 56/57 derived from the diol 10 were characterized as the acetates 58/59. The regio- and stereoselectivities of the glycosidation by 1 were much better for the α-D-manno-configurated axial, equatorial cis-2,3-diol 11 and the galacto-configurated axial, equatorial cis-3,4-diol 13 (1,2-/1,3-linked disaccharides ca. 3:7 for 11 and 1,3-/1,4-linked disaccharides ca. 4:1 for 13; Scheme 3, Table 4). The regio- and stereoselectivity for the β-D-manno-configurated cis-2,3-diol 12 were, however, rather poor (1,2-/1,3-linked products 48:52). The 1,2-linked disaccharides 66/67 derived from 12 were characterized as the acetates 70/71. Koenigs-Knorr-type glycosidation of the cis-diols 11-13 by 2 or 3 proceeded with a similar regio- and a higher stereoselectivity (α-D 〉 β-D with the donor 2 and α-D 〈 β-D with the donor 3) than with 1, with the exception of 12 which did not react with 2. The regioselectivity of the glycosidations by 1 agrees fully with the H-bonding scheme of the diols and with the hypothesis that the intermediate carbene is preferentially protonated by the most weakly H-bonded OH group. The regioselectivity of the glycosidation by 2 and by 3 is determined by a higher reactivity of the equatorial OH groups and by H-bonding. Several H-bonded and equilibrating isomers of a given diol may intervene in the glycosidation by 1, or by 2 and 3, resulting in the same regioselectivity. The low nucleophilicity of 12 and the low degree of regioselectivity in its reaction with 3 show that stereoelectronic effects may also profoundly influence the nucleophilicity of OH groups.
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  • 199
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    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 77 (1994), S. 323-333 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The luminescent EuIII ion has been used to probe the metal-binding sites of bovine α-lactalbumin (BLA) in D2O. Upon addition of apo-BLA to an EuIII-containing solution, the intrinsic luminescence of the protein is quenched, and the EuIII luminescence is enhanced. Luminescent titrations point to there being at least two different metal-binding sites in the apo-protein. Curve analysis of the high resolution 5D0←7F0 excitation spectra reveals the existence of three different environments for the bonded EuIII ions. Two environments, labelled Ia and Ib, give 5D0←7F0 bands very close in energy; they contain four negatively charged groups and are assigned to one site we identify as the calcium-binding site. Site I is protected from solvent influences and is somewhat rigid, since it displays selectivity towards lanthanide ions. The origin of the two similar environments Ia and Ib could not be determined unambiguously. The third environment is ascribed to a nonspecific metal-binding site in which the EuIII ion is more exposed to the solvent (site II). It is sequentially populated after saturation of site I, and its population is pH-dependent. The affinity constant of EuIII for this site was estimated from the excitation spectra: log K2app = 3.5(1). Assignment of the metal binding sites has been facilitated by comparison with model compounds, [Eu(dota)]- (dota = 1,4,7,10-tetraazacyclododecane N,N′,N″, N‴-tetraacetate), [Eu(dtpa)]2- (dtpa = diethylenetriamine tetraacetate), and [Eu(bsa)] (bsa = bovine serum albumin). The usefulness and limits of the use of curve-analysis procedures to unravel the various components of 5D0←7F0 excitation spectra in biological materials are also discussed.
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  • 200
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 77 (1994), S. 351-371 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthesis of four electropolymerizable 2,2′-bipyridinium salts with tuned reduction potential (E1∘) is described (N,N′-ethylene-4-methyl-4′-vinyl-2,2′-bipyridinium dibromide (4; E1∘ =-0.48 V), 4-methyl-N, N′-(trimethylene)-4′-vinyl-2,2′-bipyridinium dibromide (5; E1∘= -0.66 V), N,N′-ethylene-4-methyl-4′-[2-(1H-pyrrol-1-yl)ethyl]-2, 2′-bipyridinium bis(hexafluorophosphate) (6b; E1∘= -0.46 V), and 4-methyl-4′-[2-(1H-pyrrol-1-yl)ethyl]-N, N′-(trimethylene)-2,2′-bipyridinium bis(hexafluorophosphate) (7b; E1∘= -0.66 V)). E1∘-Tuning is based on the torsional angle C(3)-C(2)-C(2′)-C(3′), imposed by the N,N′-ethylene and N,N′-(trimethylene) bridge. The vinylic compounds 4 and 5 undergo cathodic, the pyrrole derivatives 6b and 7b anodic electropolymerization on glassy carbon electrodes from MeCN solutions, yielding thin, surface-confined films with surface concentrations of redox-active material in the range 5 · 10-9 〈 Γ 〈 2.10-8 mol/cm2, depending on experimental conditions. The modified electrodes exhibit reversible ‘diquat’ electrochemistry in pure solvent/electrolyte. Copolymerization of 6b or 7b with pyrrole yields most stable electrodes. Bi ayer-film-modified electrodes were prepared by sequential electropolymerization of the monomers. The assembly electrode/poly-6b/poly-7b behaves as a switch, it transforms - as a Schmitt trigger - an analog input signal (the electrode potential) into a digital output signal (redox state of the outer polymer film). Forward-(electrode/poly-7b/poly-6b) and reverse-biased assemblies (electrode/poly-6b/poly-7b) were coupled to the electrochemical reduction of redox-active solution species, e.g. N- (cyanomethyl)-N′-methyl-4,4′-bipyridinium bis(hexafluorophosphate) (8). Zener-diode-like behavior was observed. Aspects of redox-polymer multilayer-film assemblies, sandwiched between two electronic conductors, are discussed in terms of molecular electronic devices.
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