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  • 101
    Publikationsdatum: 2021-08-03
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 102
    Publikationsdatum: 2021-03-05
    Beschreibung: Understanding the pathophysiological processes of cartilage degradation requires adequate model systems to develop therapeutic strategies towards osteoarthritis (OA). Although different in vitro or in vivo models have been described, further comprehensive approaches are needed to study specific disease aspects. This study aimed to combine in vitro and in silico modeling based on a tissue-engineering approach using mesenchymal condensation to mimic cytokine-induced cellular and matrix-related changes during cartilage degradation. Thus, scaffold-free cartilage-like constructs (SFCCs) were produced based on self-organization of mesenchymal stromal cells (mesenchymal condensation) and i) characterized regarding their cellular and matrix composition or secondly ii) treated with interleukin-1β (IL-1β) and tumor necrosis factor α (TNFα) for 3 weeks to simulate OA-related matrix degradation. In addition, an existing mathematical model based on partial differential equations was optimized and transferred to the underlying settings to simulate distribution of IL-1β, type II collagen degradation and cell number reduction. By combining in vitro and in silico methods, we aim to develop a valid, efficient alternative approach to examine and predict disease progression and effects of new therapeutics.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 103
    Publikationsdatum: 2021-10-28
    Beschreibung: Motivated by the desire to numerically calculate rigorous upper and lower bounds on deviation probabilities over large classes of probability distributions, we present an adaptive algorithm for the reconstruction of increasing real-valued functions. While this problem is similar to the classical statistical problem of isotonic regression, the optimisation setting alters several characteristics of the problem and opens natural algorithmic possibilities. We present our algorithm, establish sufficient conditions for convergence of the reconstruction to the ground truth, and apply the method to synthetic test cases and a real-world example of uncertainty quantification for aerodynamic design.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 104
    Publikationsdatum: 2020-09-14
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 105
    Publikationsdatum: 2021-04-16
    Sprache: Englisch
    Materialart: reportzib , doc-type:preprint
    Format: application/pdf
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  • 106
    Publikationsdatum: 2021-02-23
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 107
    Publikationsdatum: 2021-03-26
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 108
    Publikationsdatum: 2021-02-23
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 109
    Publikationsdatum: 2022-03-14
    Beschreibung: It is a challenging task to fairly compare local solvers and heuristics against each other and against global solvers. How does one weigh a faster termination time against a better quality of the found solution? In this paper, we introduce the confined primal integral, a new performance measure that rewards a balance of speed and solution quality. It emphasizes the early part of the solution process by using an exponential decay. Thereby, it avoids that the order of solvers can be inverted by choosing an arbitrarily large time limit. We provide a closed analytic formula to compute the confined primal integral a posteriori and an incremental update formula to compute it during the run of an algorithm. For the latter, we show that we can drop one of the main assumptions of the primal integral, namely the knowledge of a fixed reference solution to compare against. Furthermore, we prove that the confined primal integral is a transitive measure when comparing local solves with different final solution values. Finally, we present a computational experiment where we compare a local MINLP solver that uses certain classes of cutting planes against a solver that does not. Both versions show very different tendencies w.r.t. average running time and solution quality, and we use the confined primal integral to argue which of the two is the preferred setting.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 110
    Publikationsdatum: 2021-02-22
    Sprache: Englisch
    Materialart: bookpart , doc-type:bookPart
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  • 111
    Publikationsdatum: 2022-03-14
    Beschreibung: The Periodic Event Scheduling Problem is a well-studied NP-hard problem with applications in public transportation to find good periodic timetables. Among the most powerful heuristics to solve the periodic timetabling problem is the modulo network simplex method. In this paper, we consider the more difficult version with integrated passenger routing and propose a refined integrated variant to solve this problem on real-world-based instances.
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 112
    Publikationsdatum: 2021-02-05
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 113
    Publikationsdatum: 2022-03-14
    Beschreibung: Dual degeneracy, i.e., the presence of multiple optimal bases to a linear programming (LP) problem, heavily affects the solution process of mixed integer programming (MIP) solvers. Different optimal bases lead to different cuts being generated, different branching decisions being taken and different solutions being found by primal heuristics. Nevertheless, only a few methods have been published that either avoid or exploit dual degeneracy. The aim of the present paper is to conduct a thorough computational study on the presence of dual degeneracy for the instances of well-known public MIP instance collections. How many instances are affected by dual degeneracy? How degenerate are the affected models? How does branching affect degeneracy: Does it increase or decrease by fixing variables? Can we identify different types of degenerate MIPs? As a tool to answer these questions, we introduce a new measure for dual degeneracy: the variable–constraint ratio of the optimal face. It provides an estimate for the likelihood that a basic variable can be pivoted out of the basis. Furthermore, we study how the so-called cloud intervals—the projections of the optimal face of the LP relaxations onto the individual variables—evolve during tree search and the implications for reducing the set of branching candidates.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 114
    Publikationsdatum: 2021-04-20
    Beschreibung: This article is mainly motivated by the urge to answer two kinds of questions regarding the Bundesliga, which is Germany’s primary football (soccer) division having the highest average stadium attendance worldwide: “At any point in the season, what is the lowest final rank a certain team can achieve?” and “At any point in the season, what is the highest final rank a certain team can achieve?”. Although we focus on the Bundesliga in particular, the integer programming formulations we introduce to answer these questions can easily be adapted to a variety of other league systems and tournaments.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 115
    Publikationsdatum: 2021-07-06
    Beschreibung: Markov chain (MC) algorithms are ubiquitous in machine learning and statistics and many other disciplines. Typically, these algorithms can be formulated as acceptance rejection methods. In this work we present a novel estimator applicable to these methods, dubbed Markov chain importance sampling (MCIS), which efficiently makes use of rejected proposals. For the unadjusted Langevin algorithm, it provides a novel way of correcting the discretization error. Our estimator satisfies a central limit theorem and improves on error per CPU cycle, often to a large extent. As a by-product it enables estimating the normalizing constant, an important quantity in Bayesian machine learning and statistics.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 116
    Publikationsdatum: 2021-02-23
    Beschreibung: The presence of a confining boundary can modify the local structure of a liquid markedly. In addition, small samples of finite size are known to exhibit systematic deviations of thermodynamic quantities relative to their bulk values. Here, we consider the static structure factor of a liquid sample in slab geometry with open boundaries at the surfaces, which can be thought of as virtually cutting out the sample from a macroscopically large, homogeneous fluid. This situation is a relevant limit for the interpretation of grazing-incidence diffraction experiments at liquid interfaces and films. We derive an exact, closed expression for the slab structure factor, with the bulk structure factor as the only input. This shows that such free boundary conditions cause significant differences between the two structure factors, in particular, at small wavenumbers. An asymptotic analysis of this result yields the scaling exponent and an accurate, useful approximation of these finite-size corrections. Furthermore, the open boundaries permit the interpretation of the slab as an open system, supporting particle exchange with a reservoir. We relate the slab structure factor to the particle number fluctuations and discuss conditions under which the subvolume of the slab represents a grand canonical ensemble with chemical potential μ and temperature T. Thus, the open slab serves as a test-bed for the small-system thermodynamics in a μT reservoir. We provide a microscopically justified and exact result for the size dependence of the isothermal compressibility. Our findings are corroborated by simulation data for Lennard-Jones liquids at two representative temperatures.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 117
    Publikationsdatum: 2021-10-26
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 118
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 119
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 120
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 121
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: masterthesis , doc-type:masterThesis
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  • 122
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 123
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 124
  • 125
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: researchdata , doc-type:ResearchData
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  • 126
    Publikationsdatum: 2022-06-13
    Beschreibung: Large capacity Storage Class Memory (SCM) opens new possibilities for workloads requiring a large memory footprint. We examine optimization strategies for a legacy Fortran application on systems with an heterogeneous memory configuration comprising SCM and DRAM. We present a performance study for the multigrid solver component of the large-eddy simulation framework PALM for different memory configurations with large capacity SCM. An important optimization approach is the explicit assignment of storage locations depending on the data access characteristic to take advantage of the heterogeneous memory configuration. We are able to demonstrate that an explicit control over memory locations provides better performance compared to transparent hardware settings. As on aforementioned systems the page management by the OS appears as critical performance factor, we study the impact of different huge page settings.
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 127
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 128
    Publikationsdatum: 2022-06-13
    Sprache: Englisch
    Materialart: other , doc-type:Other
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  • 129
    Publikationsdatum: 2022-06-27
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 130
    Publikationsdatum: 2022-06-27
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 131
    Publikationsdatum: 2022-06-27
    Beschreibung: In this article we introduce a Minimum Cycle Partition Problem with Length Requirements (CPLR). This generalization of the Travelling Salesman Problem (TSP) originates from routing Unmanned Aerial Vehicles (UAVs). Apart from nonnegative edge weights, CPLR has an individual critical weight value associated with each vertex. A cycle partition, i.e., a vertex disjoint cycle cover, is regarded as a feasible solution if the length of each cycle, which is the sum of the weights of its edges, is not greater than the critical weight of each of its vertices. The goal is to find a feasible partition, which minimizes the number of cycles. In this article, a heuristic algorithm is presented together with a Mixed Integer Programming (MIP) formulation of CPLR. We furthermore introduce a conflict graph, whose cliques yield valid constraints for the MIP model. Finally, we report on computational experiments conducted on TSPLIB-based test instances.
    Sprache: Englisch
    Materialart: bookpart , doc-type:bookPart
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  • 132
    Publikationsdatum: 2022-07-07
    Sprache: Englisch
    Materialart: bookpart , doc-type:bookPart
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  • 133
    Publikationsdatum: 2022-07-19
    Beschreibung: Surgical tool segmentation in endoscopic videos is an important component of computer assisted interventions systems. Recent success of image-based solutions using fully-supervised deep learning approaches can be attributed to the collection of big labeled datasets. However, the annotation of a big dataset of real videos can be prohibitively expensive and time consuming. Computer simulations could alleviate the manual labeling problem, however, models trained on simulated data do not generalize to real data. This work proposes a consistency-based framework for joint learning of simulated and real (unlabeled) endoscopic data to bridge this performance generalization issue. Empirical results on two data sets (15 videos of the Cholec80 and EndoVis'15 dataset) highlight the effectiveness of the proposed Endo-Sim2Real method for instrument segmentation. We compare the segmentation of the proposed approach with state-of-the-art solutions and show that our method improves segmentation both in terms of quality and quantity.
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 134
    Publikationsdatum: 2022-07-19
    Beschreibung: An advantageous property of mesh-based geometric morphometrics (GM) towards landmark-based approaches, is the possibility of precisely examining highly irregular shapes and highly topographic surfaces. In case of spherical-harmonics-based GM the main requirement is a completely closed mesh surface, which often is not given, especially when dealing with natural objects. Here we present a methodological workflow to prepare 3D segmentations containing large cavity openings for the conduction of spherical-harmonics-based GM. This will be exemplified with a case study on claws of hermit crabs (Paguroidea, Decapoda, Crustacea), whereby joint openings – between manus and “movable finger” – typify the large-cavity-opening problem. We found a methodology including an ambient-occlusion-based segmentation algorithm leading to results precise and suitable to study the inter- and intraspecific differences in shape of hermit crab claws. Statistical analyses showed a significant separation between all examined diogenid and pagurid claws, whereas the separation between all left and right claws did not show significance. Additionally, the procedure offers other benefits. It is easy to reproduce and creates sparse variance in the data, closures integrate smoothly into the total structures and the algorithm saves a significant amount of time.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 135
    Publikationsdatum: 2022-07-19
    Beschreibung: Automatic recognition of surgical phases is an important component for developing an intra-operative context-aware system. Prior work in this area focuses on recognizing short-term tool usage patterns within surgical phases. However, the difference between intra- and inter-phase tool usage patterns has not been investigated for automatic phase recognition. We developed a Recurrent Neural Network (RNN), in particular a state-preserving Long Short Term Memory (LSTM) architecture to utilize the long-term evolution of tool usage within complete surgical procedures. For fully automatic tool presence detection from surgical video frames, a Convolutional Neural Network (CNN) based architecture namely ZIBNet is employed. Our proposed approach outperformed EndoNet by 8.1% on overall precision for phase detection tasks and 12.5% on meanAP for tool recognition tasks.
    Sprache: Englisch
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  • 136
    Publikationsdatum: 2022-07-19
    Beschreibung: We propose generalizations of the T²-statistics of Hotelling and the Bhattacharayya distance for data taking values in Lie groups. A key feature of the derived measures is that they are compatible with the group structure even for manifolds that do not admit any bi-invariant metric. This property, e.g., assures analysis that does not depend on the reference shape, thus, preventing bias due to arbitrary choices thereof. Furthermore, the generalizations agree with the common definitions for the special case of flat vector spaces guaranteeing consistency. Employing a permutation test setup, we further obtain nonparametric, two-sample testing procedures that themselves are bi-invariant and consistent. We validate our method in group tests revealing significant differences in hippocampal shape between individuals with mild cognitive impairment and normal controls.
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 137
    Publikationsdatum: 2022-07-19
    Beschreibung: Motivation: The ever-rising volume of patients, high maintenance cost of operating rooms and time consuming analysis of surgical skills are fundamental problems that hamper the practical training of the next generation of surgeons. The hospitals prefer to keep the surgeons busy in real operations over training young surgeons for obvious economic reasons. One fundamental need in surgical training is the reduction of the time needed by the senior surgeon to review the endoscopic procedures performed by the young surgeon while minimizing the subjective bias in evaluation. The unprecedented performance of deep learning ushers the new age of data-driven automatic analysis of surgical skills. Method: Deep learning is capable of efficiently analyzing thousands of hours of laparoscopic video footage to provide an objective assessment of surgical skills. However, the traditional end-to-end setting of deep learning (video in, skill assessment out) is not explainable. Our strategy is to utilize the surgical process modeling framework to divide the surgical process into understandable components. This provides the opportunity to employ deep learning for superior yet automatic detection and evaluation of several aspects of laparoscopic cholecystectomy such as surgical tool and phase detection. We employ ZIBNet for the detection of surgical tool presence. ZIBNet employs pre-processing based on tool usage imbalance, a transfer learned 50-layer residual network (ResNet-50) and temporal smoothing. To encode the temporal evolution of tool usage (over the entire video sequence) that relates to the surgical phases, Long Short Term Memory (LSTM) units are employed with long-term dependency. Dataset: We used CHOLEC 80 dataset that consists of 80 videos of laparoscopic cholecystectomy performed by 13 surgeons, divided equally for training and testing. In these videos, up to three different tools (among 7 types of tools) can be present in a frame. Results: The mean average precision of the detection of all tools is 93.5 ranging between 86.8 and 99.3, a significant improvement (p 〈0.01) over the previous state-of-the-art. We observed that less frequent tools like Scissors, Irrigator, Specimen Bag etc. are more related to phase transitions. The overall precision (recall) of the detection of all surgical phases is 79.6 (81.3). Conclusion: While this is not the end goal for surgical skill analysis, the development of such a technological platform is essential toward a data-driven objective understanding of surgical skills. In future, we plan to investigate surgeon-in-the-loop analysis and feedback for surgical skill analysis.
    Sprache: Englisch
    Materialart: other , doc-type:Other
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  • 138
    Publikationsdatum: 2022-07-19
    Beschreibung: The images of D’Arcy Wentworth Thompson’s book “On Growth and Form” got an iconic status and became influential for biometrics and other mathematical approaches to organismic form. In particular, this is true for those of the chapter on the theory of transformation, which even has an impact on art and humanities. Based on his approach, Thompson formulated far-reaching conclusions with a partly anti-Darwinian stance. Here, we use the example of Thompson’s transformation of crab carapaces to test to what degree the transformation of grids, landmarks, and shapes result in congruent images. For comparison, we applied the same series of tests to digitized carapaces of real crabs. Both approaches show similar results. Only the simple transformations show a reasonable form of congruence. In particular, the transformations to majoid spider crabs reveal a complicated transformation of grids with partly crossing lines. By contrast, the carapace of the lithodid species is relatively easily created despite the fact that it is no brachyuran, but evolved a spider crab-like shape convergently from a hermit crab ancestor.
    Sprache: Englisch
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  • 139
    Publikationsdatum: 2022-07-19
    Beschreibung: Intrinsic and parametric regression models are of high interest for the statistical analysis of manifold-valued data such as images and shapes. The standard linear ansatz has been generalized to geodesic regression on manifolds making it possible to analyze dependencies of random variables that spread along generalized straight lines. Nevertheless, in some scenarios, the evolution of the data cannot be modeled adequately by a geodesic. We present a framework for nonlinear regression on manifolds by considering Riemannian splines, whose segments are Bézier curves, as trajectories. Unlike variational formulations that require time-discretization, we take a constructive approach that provides efficient and exact evaluation by virtue of the generalized de Casteljau algorithm. We validate our method in experiments on the reconstruction of periodic motion of the mitral valve as well as the analysis of femoral shape changes during the course of osteoarthritis, endorsing Bézier spline regression as an effective and flexible tool for manifold-valued regression.
    Sprache: Englisch
    Materialart: conferenceobject , doc-type:conferenceObject
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  • 140
    Publikationsdatum: 2022-07-19
    Beschreibung: A prerequisite for many analysis tasks in modern comparative biology is the segmentation of 3-dimensional (3D) images of the specimens being investigated (e.g. from microCT data). Depending on the specific imaging technique that was used to acquire the images and on the image resolution, different segmentation tools will be required. While some standard tools exist that can often be applied for specific subtasks, building whole processing pipelines solely from standard tools is often difficult. Some tasks may even necessitate the implementation of manual interaction tools to achieve a quality that is sufficient for the subsequent analysis. In this work, we present a pipeline of segmentation tools that can be used for the semi-automatic segmentation and quantitative analysis of voids in tissue (i.e. internal structural porosity). We use this pipeline to analyze lacuno-canalicular networks in stingray tesserae from 3D images acquired with synchrotron microCT. * The first step of this processing pipeline, the segmentation of the tesserae, was performed using standard marker-based watershed segmentation. The efficient processing of the next two steps, that is, the segmentation of all lacunae spaces belonging to a specific tessera and the separation of these spaces into individual lacunae required modern, recently developed tools. * For proofreading, we developed a graph-based interactive method that allowed us to quickly split lacunae that were accidentally merged, and to merge lacunae that were wrongly split. * Finally, the tesserae and their corresponding lacunae were subdivided into anatomical regions of interest (structural wedges) using a semi- manual approach.
    Sprache: Englisch
    Materialart: reportzib , doc-type:preprint
    Format: application/pdf
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  • 141
    Publikationsdatum: 2022-07-19
    Beschreibung: In most vertebrates the embryonic cartilaginous skeleton is replaced by bone during development. During this process, cartilage cells (chondrocytes) mineralize the extracellular matrix and undergo apoptosis, giving way to bone cells (osteocytes). In contrast, sharks and rays (elasmobranchs) have cartilaginous skeletons throughout life, where only the surface mineralizes, forming a layer of tiles (tesserae). Elasmobranch chondrocytes, unlike those of other vertebrates, survive cartilage mineralization and are maintained alive in spaces (lacunae) within tesserae. However, the function(s) of the chondrocytes in the mineralized tissue remain unknown. Applying a custom analysis workflow to high-resolution synchrotron microCT scans of tesserae, we characterize the morphologies and arrangements of stingray chondrocyte lacunae, using lacunar morphology as a proxy for chondrocyte morphology. We show that the cell density is comparable in unmineralized and mineralized tissue from our study species and that cells maintain the similar volume even when they have been incorporated into tesserae. This discovery supports previous hypotheses that elasmobranch chondrocytes, unlike those of other taxa, do not proliferate, hypertrophy or undergo apoptosis during mineralization. Tessera lacunae show zonal variation in their shapes—being flatter further from and more spherical closer to the unmineralized cartilage matrix and larger in the center of tesserae— and show pronounced organization into parallel layers and strong orientation toward neighboring tesserae. Tesserae also exhibit local variation in lacunar density, with the density considerably higher near pores passing through the tesseral layer, suggesting pores and cells interact (e.g. that pores contain a nutrient source). We hypothesize that the different lacunar types reflect the stages of the tesserae formation process, while also representing local variation in tissue architecture and cell function. Lacunae are linked by small passages (canaliculi) in the matrix to form elongate series at the tesseral periphery and tight clusters in the center of tesserae, creating a rich connectivity among cells. The network arrangement and the shape variation of chondrocytes in tesserae indicate that cells may interact within and between tesserae and manage mineralization differently from chondrocytes in other vertebrates, perhaps performing analogous roles to osteocytes in bone.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 142
    Publikationsdatum: 2022-07-19
    Beschreibung: This study’s objective was the generation of a standardized geometry of the healthy nasal cavity. An average geometry of the healthy nasal cavity was generated using a statistical shape model based on 25 symptom-free subjects. Airflow within the average geometry and these geometries was calculated using fluid simulations. Integral measures of the nasal resistance, wall shear stresses (WSS) and velocities were calculated as well as cross-sectional areas (CSA). Furthermore, individual WSS and static pressure distributions were mapped onto the average geometry. The average geometry featured an overall more regular shape that resulted in less resistance, reduced wall shear stresses and velocities compared to the median of the 25 geometries. Spatial distributions of WSS and pressure of average geometry agreed well compared to the average distributions of all individual geometries. The minimal CSA of the average geometry was larger than the median of all individual geometries (83.4 vs. 74.7 mm²). The airflow observed within the average geometry of the healthy nasal cavity did not equal the average airflow of the individual geometries. While differences observed for integral measures were notable, the calculated values for the average geometry lay within the distributions of the individual parameters. Spatially resolved parameters differed less prominently.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 143
    Publikationsdatum: 2022-07-19
    Beschreibung: We present time-space trade-offs for computing the Euclidean minimum spanning tree of a set S of n point-sites in the plane. More precisely, we assume that S resides in a random-access memory that can only be read. The edges of the Euclidean minimum spanning tree EMST(S) have to be reported sequentially, and they cannot be accessed or modified afterwards. There is a parameter s in {1, ..., n} so that the algorithm may use O(s) cells of read-write memory (called the workspace) for its computations. Our goal is to find an algorithm that has the best possible running time for any given s between 1 and n. We show how to compute EMST(S) in O(((n^3)/(s^2)) log s) time with O(s) cells of workspace, giving a smooth trade-off between the two best-known bounds O(n^3) for s = 1 and O(n log n) for s = n. For this, we run Kruskal's algorithm on the "relative neighborhood graph" (RNG) of S. It is a classic fact that the minimum spanning tree of RNG(S) is exactly EMST(S). To implement Kruskal's algorithm with O(s) cells of workspace, we define s-nets, a compact representation of planar graphs. This allows us to efficiently maintain and update the components of the current minimum spanning forest as the edges are being inserted.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 144
    Publikationsdatum: 2022-07-19
    Beschreibung: In most vertebrates the embryonic cartilaginous skeleton is replaced by bone during development. During this process, cartilage cells (chondrocytes) mineralize the extracellular matrix and undergo apoptosis, giving way to bone cells (osteocytes). In contrast, sharks and rays (elasmobranchs) have cartilaginous skeletons throughout life, where only the surface mineralizes, forming a layer of tiles (tesserae). Elasmobranch chondrocytes, unlike those of other vertebrates, survive cartilage mineralization and are maintained alive in spaces (lacunae) within tesserae. However, the function(s) of the chondrocytes in the mineralized tissue remain unknown. Applying a custom analysis workflow to high-resolution synchrotron microCT scans of tesserae, we characterize the morphologies and arrangements of stingray chondrocyte lacunae, using lacunar morphology as a proxy for chondrocyte morphology. We show that the cell density is comparable in unmineralized and mineralized tissue from our study species and that cells maintain the similar volume even when they have been incorporated into tesserae. This discovery supports previous hypotheses that elasmobranch chondrocytes, unlike those of other taxa, do not proliferate, hypertrophy or undergo apoptosis during mineralization. Tessera lacunae show zonal variation in their shapes—being flatter further from and more spherical closer to the unmineralized cartilage matrix and larger in the center of tesserae— and show pronounced organization into parallel layers and strong orientation toward neighboring tesserae. Tesserae also exhibit local variation in lacunar density, with the density considerably higher near pores passing through the tesseral layer, suggesting pores and cells interact (e.g. that pores contain a nutrient source). We hypothesize that the different lacunar types reflect the stages of the tesserae formation process, while also representing local variation in tissue architecture and cell function. Lacunae are linked by small passages (canaliculi) in the matrix to form elongate series at the tesseral periphery and tight clusters in the center of tesserae, creating a rich connectivity among cells. The network arrangement and the shape variation of chondrocytes in tesserae indicate that cells may interact within and between tesserae and manage mineralization differently from chondrocytes in other vertebrates, perhaps performing analogous roles to osteocytes in bone.
    Sprache: Englisch
    Materialart: reportzib , doc-type:preprint
    Format: application/pdf
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  • 145
    Publikationsdatum: 2022-07-19
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 146
    Publikationsdatum: 2022-07-19
    Beschreibung: An advantageous property of mesh-based geometric morphometrics (GM) towards landmark-based approaches, is the possibility of precisely examining highly irregular shapes and highly topographic surfaces. In case of spherical-harmonics-based GM the main requirement is a completely closed mesh surface, which often is not given, especially when dealing with natural objects. Here we present a methodological workflow to prepare 3D segmentations containing large cavity openings for the conduction of spherical-harmonics-based GM. This will be exemplified with a case study on claws of hermit crabs (Paguroidea, Decapoda, Crustacea), whereby joint openings – between manus and “movable finger” – typify the large-cavity-opening problem. We found a methodology including an ambient-occlusion-based segmentation algorithm leading to results precise and suitable to study the inter- and intraspecific differences in shape of hermit crab claws. Statistical analyses showed a significant separation between all examined diogenid and pagurid claws, whereas the separation between all left and right claws did not show significance. Additionally, the procedure offers other benefits. It is easy to reproduce and creates sparse variance in the data, closures integrate smoothly into the total structures and the algorithm saves a significant amount of time.
    Sprache: Englisch
    Materialart: reportzib , doc-type:preprint
    Format: application/pdf
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  • 147
    Publikationsdatum: 2022-07-19
    Beschreibung: We present a software-assisted workflow for the alignment and matching of filamentous structures across a 3D stack of serial images. This is achieved by combining automatic methods, visual validation, and interactive correction. After an initial alignment, the user can continuously improve the result by interactively correcting landmarks or matches of filaments. Supported by a visual quality assessment of regions that have been already inspected, this allows a trade-off between quality and manual labor. The software tool was developed to investigate cell division by quantitative 3D analysis of microtubules (MTs) in both mitotic and meiotic spindles. For this, each spindle is cut into a series of semi-thick physical sections, of which electron tomograms are acquired. The serial tomograms are then stitched and non-rigidly aligned to allow tracing and connecting of MTs across tomogram boundaries. In practice, automatic stitching alone provides only an incomplete solution, because large physical distortions and a low signal-to-noise ratio often cause experimental difficulties. To derive 3D models of spindles despite the problems related to sample preparation and subsequent data collection, semi-automatic validation and correction is required to remove stitching mistakes. However, due to the large number of MTs in spindles (up to 30k) and their resulting dense spatial arrangement, a naive inspection of each MT is too time consuming. Furthermore, an interactive visualization of the full image stack is hampered by the size of the data (up to 100 GB). Here, we present a specialized, interactive, semi-automatic solution that considers all requirements for large-scale stitching of filamentous structures in serial-section image stacks. The key to our solution is a careful design of the visualization and interaction tools for each processing step to guarantee real-time response, and an optimized workflow that efficiently guides the user through datasets.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 148
    Publikationsdatum: 2022-07-19
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 149
    Publikationsdatum: 2022-07-19
    Beschreibung: Quantitative photoacoustic tomography aims recover the spatial distribution of absolute chromophore concentrations and their ratios from deep tissue, high-resolution images. In this study, a model-based inversion scheme based on a Monte-Carlo light transport model is experimentally validated on 3-D multispectral images of a tissue phantom acquired using an all-optical scanner with a planar detection geometry. A calibrated absorber allowed scaling of the measured data during the inversion, while an acoustic correction method was employed to compensate the effects of limited view detection. Chromophore- and fluence-dependent step sizes and Adam optimization were implemented to achieve rapid convergence. High resolution 3-D maps of absolute concentrations and their ratios were recovered with high accuracy. Potential applications of this method include quantitative functional and molecular photoacoustic tomography of deep tissue in preclinical and clinical studies.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 150
    Publikationsdatum: 2022-07-19
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 151
    Publikationsdatum: 2022-07-19
    Beschreibung: We analytically determine Jacobi fields and parallel transports and compute geodesic regression in Kendall’s shape space. Using the derived expressions, we can fully leverage the geometry via Riemannian optimization and thereby reduce the computational expense by several orders of magnitude over common, nonlinear constrained approaches. The methodology is demonstrated by performing a longitudinal statistical analysis of epidemiological shape data. As an example application we have chosen 3D shapes of knee bones, reconstructed from image data of the Osteoarthritis Initiative (OAI). Comparing subject groups with incident and developing osteoarthritis versus normal controls, we find clear differences in the temporal development of femur shapes. This paves the way for early prediction of incident knee osteoarthritis, using geometry data alone.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 152
    Publikationsdatum: 2022-07-19
    Beschreibung: A prerequisite for many analysis tasks in modern comparative biology is the segmentation of 3-dimensional (3D) images of the specimens being investigated (e.g. from microCT data). Depending on the specific imaging technique that was used to acquire the images and on the image resolution, different segmentation tools will be required. While some standard tools exist that can often be applied for specific subtasks, building whole processing pipelines solely from standard tools is often difficult. Some tasks may even necessitate the implementation of manual interaction tools to achieve a quality that is sufficient for the subsequent analysis. In this work, we present a pipeline of segmentation tools that can be used for the semi-automatic segmentation and quantitative analysis of voids in tissue (i.e. internal structural porosity). We use this pipeline to analyze lacuno-canalicular networks in stingray tesserae from 3D images acquired with synchrotron microCT. * The first step of this processing pipeline, the segmentation of the tesserae, was performed using standard marker-based watershed segmentation. The efficient processing of the next two steps, that is, the segmentation of all lacunae spaces belonging to a specific tessera and the separation of these spaces into individual lacunae required modern, recently developed tools. * For proofreading, we developed a graph-based interactive method that allowed us to quickly split lacunae that were accidentally merged, and to merge lacunae that were wrongly split. * Finally, the tesserae and their corresponding lacunae were subdivided into anatomical regions of interest (structural wedges) using a semi- manual approach.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 153
    Publikationsdatum: 2022-07-19
    Beschreibung: Conflicting hypotheses about the relationships among the major lineages of aculeate Hymenoptera clearly show the necessity of detailed comparative morphological studies. Using micro-computed tomography and 3D reconstructions, the skeletal musculature of the meso- and metathorax and the first and second abdominal segment in Apoidea are described. Females of Sceliphron destillatorium, Sphex (Fernaldina) lucae (both Sphecidae), and Ampulex compressa (Ampulicidae) were examined. The morphological terminology provided by the Hymenoptera Anatomy Ontology is used. Up to 42 muscles were found. The three species differ in certain numerical and structural aspects. Ampulicidae differs significantly from Sphecidae in the metathorax and the anterior abdomen. The metapleural apodeme and paracoxal ridge are weakly developed in Ampulicidae, which affect some muscular structures. Furthermore, the muscles that insert on the coxae and trochanters are broader and longer in Ampulicidae. A conspicuous characteristic of Sphecidae is the absence of the metaphragma. Overall, we identified four hitherto unrecognized muscles. Our work suggests additional investigations on structures discussed in this paper.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 154
    Publikationsdatum: 2022-07-19
    Beschreibung: We present an automated method for extrapolating missing regions in label data of the skull in an anatomically plausible manner. The ultimate goal is to design patient-speci� c cranial implants for correcting large, arbitrarily shaped defects of the skull that can, for example, result from trauma of the head. Our approach utilizes a 3D statistical shape model (SSM) of the skull and a 2D generative adversarial network (GAN) that is trained in an unsupervised fashion from samples of healthy patients alone. By � tting the SSM to given input labels containing the skull defect, a First approximation of the healthy state of the patient is obtained. The GAN is then applied to further correct and smooth the output of the SSM in an anatomically plausible manner. Finally, the defect region is extracted using morphological operations and subtraction between the extrapolated healthy state of the patient and the defective input labels. The method is trained and evaluated based on data from the MICCAI 2020 AutoImplant challenge. It produces state-of-the art results on regularly shaped cut-outs that were present in the training and testing data of the challenge. Furthermore, due to unsupervised nature of the approach, the method generalizes well to previously unseen defects of varying shapes that were only present in the hidden test dataset.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 155
    Publikationsdatum: 2022-09-22
    Beschreibung: A new virtual unfolding technique was applied to a silver scroll excavated in Jerash, Jordan, in 2014. As result of the unfolding, 17 lines of writing are clearly visible in the unfolded volumetric data that is published here.
    Sprache: Englisch
    Materialart: researchdata , doc-type:ResearchData
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  • 156
    Publikationsdatum: 2022-11-28
    Sprache: Englisch
    Materialart: book , doc-type:book
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  • 157
  • 158
    Publikationsdatum: 2022-11-28
    Sprache: Englisch
    Materialart: incollection , doc-type:Other
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  • 159
    Publikationsdatum: 2022-11-28
    Beschreibung: We present a novel kernel-based machine learning algorithm for identifying the low-dimensional geometry of the effective dynamics of high-dimensional multiscale stochastic systems. Recently, the authors developed a mathematical framework for the computation of optimal reaction coordinates of such systems that is based on learning a parameterization of a low-dimensional transition manifold in a certain function space. In this article, we enhance this approach by embedding and learning this transition manifold in a reproducing kernel Hilbert space, exploiting the favorable properties of kernel embeddings. Under mild assumptions on the kernel, the manifold structure is shown to be preserved under the embedding, and distortion bounds can be derived. This leads to a more robust and more efficient algorithm compared to the previous parameterization approaches.
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 160
    facet.materialart.
    Unbekannt
    Publikationsdatum: 2022-11-28
    Beschreibung: Markov State Models (MSM) sind der Goldstandard zur Modellierung biomolekularer Dynamik, da sie die Identifizierung und Analyse metastabiler Zustände ermöglichen. Die robuste Perron-Cluster-Cluster-Analyse (PCCA+) ist ein verbreiteter Spectral-Clustering-Algorithmus, der für das Clustering hochdimensionaler MSM verwendet wird. Da die PCCA+ auf reversible Prozesse beschränkt ist, wird sie zur Generalisierten PCCA+ (G-PCCA) verallgemeinert, die geeignet ist, nichtreversible Prozesse aufzuklären. Bernhard Reuter untersucht hier mittels G-PCCA die nichtthermischen Auswirkungen von Mikrowellen auf die Proteindynamik. Dazu führt er molekulardynamische Nichtgleichgewichtssimulationen des Amyloid-β-(1–40)-Peptids durch und modelliert diese.
    Sprache: Deutsch
    Materialart: book , doc-type:book
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  • 161
    Publikationsdatum: 2022-11-28
    Sprache: Englisch
    Materialart: incollection , doc-type:Other
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  • 162
    Publikationsdatum: 2022-11-28
    Beschreibung: Model reduction of large Markov chains is an essential step in a wide array of techniques for understanding complex systems and for efficiently learning structures from high-dimensional data. We present a novel aggregation algorithm for compressing such chains that exploits a specific low-rank structure in the transition matrix which, e.g., is present in metastable systems, among others. It enables the recovery of the aggregates from a vastly undersampled transition matrix which in practical applications may gain a speedup of several orders of mag- nitude over methods that require the full transition matrix. Moreover, we show that the new technique is robust under perturbation of the transition matrix. The practical applicability of the new method is demonstrated by identifying a reduced model for the large-scale traffic flow patterns from real-world taxi trip data.
    Sprache: Englisch
    Materialart: reportzib , doc-type:preprint
    Format: application/pdf
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  • 163
    Publikationsdatum: 2022-12-05
    Sprache: Englisch
    Materialart: article , doc-type:article
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  • 164
    Buch
    Buch
    Wien [u.a.] :Springer, ; 1.1977 - 16.2003; damit Ersch. eingest.
    Titel: Computing : archives for informatics and numerical computation; Supplementum
    Verlag: Wien [u.a.] :Springer,
    Erscheinungsjahr: 1977-2003
    Erscheinungsverlauf: 1.1977 - 16.2003; damit Ersch. eingest.
    Materialart: Buch
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 165
    Online-Ressource
    Online-Ressource
    Berlin ; Heidelberg :Springer, ; 1.1995(1996) - 8.2002
    Titel: Journal of molecular modeling
    Verlag: Berlin ; Heidelberg :Springer,
    Erscheinungsjahr: 1996-2002
    Erscheinungsverlauf: 1.1995(1996) - 8.2002
    ISSN: 0949-183X
    Materialart: Online-Ressource
    Sprache: Unbestimmte Sprache
    Nachfolgender Titel: Forts. ---〉:Journal of molecular modeling
    Anmerkung: Kumuliert jeweils den abgeschlossenen Jg. der Internetausg.
    Paralleltitel: Druckausg. ---〉:Molecular modeling annual
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  • 166
    Zeitschrift/Serie
    Zeitschrift/Serie
    New York, NY :ACM, ; 1.1969 - 7.1975/76; N.S. 1.1976 - 21.2001,1; damit Ersch. eingest.
    Titel: SIGBIO newsletter /
    Autor: Association for Computing Machinery / Special Interest Group on Biomedical Computing
    Verlag: New York, NY :ACM,
    Erscheinungsjahr: 1969-2001
    Erscheinungsverlauf: 1.1969 - 7.1975/76; N.S. 1.1976 - 21.2001,1; damit Ersch. eingest.
    ISSN: 0163-5697
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Paralleltitel: Internetausg. ---〉:Biomedical computing
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 167
    Zeitschrift/Serie
    Zeitschrift/Serie
    Los Alamitos, Calif. :Soc., ; 5.1997 - 8.2000; damit Ersch. eingest.
    Titel: IEEE concurrency /
    Autor: Institute of Electrical and Electronics Engineers / Computer Group
    Verlag: Los Alamitos, Calif. :Soc.,
    Erscheinungsjahr: 1997-2000
    Erscheinungsverlauf: 5.1997 - 8.2000; damit Ersch. eingest.
    ISSN: 1092-3063
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 168
    Zeitschrift/Serie
    Zeitschrift/Serie
    New York, NY :North-Holland, ; 1.1984 - 46.2000
    Titel: ¬The¬ journal of logic programming
    Verlag: New York, NY :North-Holland,
    Erscheinungsjahr: 1984-2000
    Erscheinungsverlauf: 1.1984 - 46.2000
    ISSN: 0743-1066
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Nachfolgender Titel: Forts. ---〉:¬The¬ journal of logic and algebraic programming
    Paralleltitel: Internetausg. ---〉:¬The¬ journal of logic and algebraic programming
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  • 169
    E-Ressource
    E-Ressource
    Oxford :Univ. Press, ; 1.1996/97 - 3.1999; damit Ersch. eingest.
    Titel: Medical image analysis CD : an international journal of computer vision, visualization and image- guided intervention in medicine
    Verlag: Oxford :Univ. Press,
    Erscheinungsjahr: 1996-1999
    Erscheinungsverlauf: 1.1996/97 - 3.1999; damit Ersch. eingest.
    ISSN: 1361-8431
    Materialart: Elektronische Ressource
    Sprache: Unbestimmte Sprache
    Paralleltitel: Druckausg. ---〉:Medical image analysis
    Paralleltitel: Internetausg. ---〉:Medical image analysis
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  • 170
    Zeitschrift/Serie
    Zeitschrift/Serie
    Amsterdam :CWI, ; 1.1988 - 12.1999; damit Ersch. eingest.
    Titel: CWI quarterly
    Autor: Centrum voor Wiskunde en Informatica 〈Amsterdam〉
    Verlag: Amsterdam :CWI,
    Erscheinungsjahr: 1988-1999
    Erscheinungsverlauf: 1.1988 - 12.1999; damit Ersch. eingest.
    ISSN: 0168-826X , 0922-5366
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Vorheriger Titel: Vorg. ---〉:Centrum voor Wiskunde en Informatica 〈Amsterdam〉: CWI newsletter
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  • 171
    Buch
    Buch
    New York, NY :ACM, ; Nachgewiesen 2.1971 - 20.1999,4; damit Ersch. eingest.
    Titel: Computer personnel : a quarterly publ. of the Special Interest Group on Computer Personnel Research, SIGCPR
    Verlag: New York, NY :ACM,
    Erscheinungsjahr: 1971-1999
    Erscheinungsverlauf: Nachgewiesen 2.1971 - 20.1999,4; damit Ersch. eingest.
    ISSN: 0160-2497
    Materialart: Buch
    Paralleltitel: Internetausg. ---〉:Computer personnel
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 172
    Zeitschrift/Serie
    Zeitschrift/Serie
    Amsterdam [u.a.] :Elsevier [u.a.], ; 9.1985 - 30.1998
    Titel: Computer networks and ISDN systems : the international journal of computer and telecommunications networking
    Verlag: Amsterdam [u.a.] :Elsevier [u.a.],
    Erscheinungsjahr: 1985-1998
    Erscheinungsverlauf: 9.1985 - 30.1998
    ISSN: 0169-7552 , 0376-5075
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Nachfolgender Titel: Vorg. u. Forts. ---〉:Computer networks
    Anmerkung: Computer networks for research in Europe
    Suppl.: In 14,1=15 von:Networkshop: Conference report
    Suppl.: 16,1/2=4; 17,4/5=5 von:European Networkshop: European Networkshop
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  • 173
    Zeitschrift/Serie
    Zeitschrift/Serie
    New York, NY :ACM, ; 4.1969 - 33.1998,2; damit Ersch. eingest
    Titel: SIGNUM newsletter
    Autor: Association for Computing Machinery / Special Interest Group on Numerical Mathematics
    Verlag: New York, NY :ACM,
    Erscheinungsjahr: 1969-1998
    Erscheinungsverlauf: 4.1969 - 33.1998,2; damit Ersch. eingest
    ISSN: 0163-5778
    Materialart: Zeitschrift/Serie
    Vorheriger Titel: Vorg. ---〉:Association for Computing Machinery / Special Interest Committee on Numerical Mathematics: SICNUM newsletter
    Suppl.: 16,3=3,2 von:Association for Computing Machinery / Technical Committee on Fortran: FORTEC forum
    Paralleltitel: Internetausg. ---〉:Numerical mathematics
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  • 174
    Zeitschrift/Serie
    Zeitschrift/Serie
    Woodbury, NY :AIP, ; 1.1987,1(Nov./Dez.); 2.1988 - 12.1998
    Titel: Computers in physics /
    Beteiligte Person(en): American Institute of Physics
    Verlag: Woodbury, NY :AIP,
    Erscheinungsjahr: 1987-1998
    Erscheinungsverlauf: 1.1987,1(Nov./Dez.); 2.1988 - 12.1998
    ISSN: 0894-1866
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Nachfolgender Titel: Forts. ---〉:Computing in science & engineering
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 175
    Titel: SIGART bulletin : a quarterly publ. of the Special Interest Group on Artificial Intelligence
    Autor: Association for Computing Machinery / Special Interest Group on Artificial Intelligence
    Verlag: New York, NY :ACM,
    Erscheinungsjahr: 1990-1998
    Erscheinungsverlauf: 1.1990 - 9.1998
    ISSN: 1053-4830
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Vorheriger Titel: Vorg. ---〉:Association for Computing Machinery / Special Interest Group on Artificial Intelligence: SIGART newsletter
    Nachfolgender Titel: Forts. ---〉:Intelligence
    Paralleltitel: Internetausg. ---〉:Artificial intelligence
    Bibliothek Standort Signatur Band/Heft/Jahr Verfügbarkeit
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  • 176
    Zeitschrift/Serie
    Zeitschrift/Serie
    San Francisco, Calif. :Miller Freeman, ; 1.1983 - 16.1998,3
    Titel: Unix review : the publication for the Unix community
    Verlag: San Francisco, Calif. :Miller Freeman,
    Erscheinungsjahr: 1983-1998
    Erscheinungsverlauf: 1.1983 - 16.1998,3
    ISSN: 0742-3136
    Materialart: Zeitschrift/Serie
    Sprache: Unbestimmte Sprache
    Nachfolgender Titel: Forts. ---〉:Unix review's performance computing
    Paralleltitel: Internetausg. ---〉:Unix review.com
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  • 177
    Publikationsdatum: 2014-02-26
    Beschreibung: \def\Bbb{\mathbb} For Gorenstein quotient spaces $\Bbb{C}^d/G$, a direct generalization of the classical McKay correspondence in dimensions $d\geq 4$ would primarily demand the existence of projective, crepant desingularizations. Since this turned out to be not always possible, Reid asked about special classes of such quotient spaces which would satisfy the above property. We prove that the underlying spaces of all Gorenstein abelian quotient singularities, which are embeddable as complete intersections of hypersurfaces in an affine space, have torus-equivariant projective crepant resolutions in all dimensions. We use techniques from toric and discrete geometry.
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  • 178
    Publikationsdatum: 2014-02-26
    Beschreibung: We investigate the potential and limits of interior point based cutting plane algorithms for semidefinite relaxations on basis of implementations for max-cut and quadratic 0-1 knapsack problems. Since the latter has not been described before we present the algorithm in detail and include numerical results.
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  • 179
    Publikationsdatum: 2021-02-01
    Beschreibung: \def\KukaRob {{\sf KUKA IR\,761}} {\small Industrial robots have greatly enhanced the performance of automated manufacturing processes during the last decades. International competition, however, creates an increasing demand to further improve both the accuracy of off-line programming and the resulting cycle times on production lines. To meet these objectives, validated dynamic robot models are required. We describe in detail the development of a generic dynamic model, specialize it to an actual industrial robot \KukaRob, and discuss the problem of dynamic calibration. Efficient and robust trajectory optimization algorithms are then presented which, when integrated into a CAD system, are suitable for routine application in an industrial environment. Our computational results for the \KukaRob\ robot performing a real life transport maneuver show that considerable gains in productivity can be achieved by minimizing the cycle time.}
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  • 180
    Publikationsdatum: 2014-02-26
    Beschreibung: Expected recourse functions in linear two-stage stochastic programs with mixed-integer second stage are approximated by estimating the underlying probability distribution via empirical measures. Under mild conditions, almost sure uniform convergence of the empirical means to the original expected recourse function is established.
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  • 181
    Publikationsdatum: 2020-03-09
    Beschreibung: We present a new technique for generating surface meshes from a uniform set of discrete samples. Our method extends the well-known marching cubes algorithm used for computing polygonal isosurfaces. While in marching cubes each vertex of a cubic grid cell is binary classified as lying above or below an isosurface, in our approach an arbitrary number of vertex classes can be specified. Consequently the resulting surfaces consist of patches separating volumes of two different classes each. Similar to the marching cubes algorithm all grid cells are traversed and classified according to the number of different vertex classes involved and their arrangement. The solution for each configuration is computed based on a model that assigns probabilities to the vertices and interpolates them. We introduce an automatic method to find a triangulation which approximates the boundary surfaces - implicitly given by our model - in a topological correct way. Look-up tables guarantee a high performance of the algorithm. In medical applications our method can be used to extract surfaces from a 3D segmentation of tomographic images into multiple tissue types. The resulting surfaces are well suited for subsequent volumetric mesh generation, which is needed for simulation as well as visualization tasks. The proposed algorithm provides a robust and unique solution, avoiding ambiguities occuring in other methods. The method is of great significance in modeling and animation too, where it can be used for polygonalization of non-manifold implicit surfaces.
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  • 182
    Publikationsdatum: 2015-06-01
    Beschreibung: {\small Zeilberger's algorithm provides a method to compute recurrence and differential equations from given hypergeometric series representations, and an adaption of Almquist and Zeilberger computes recurrence and differential equations for hyperexponential integrals. Further versions of this algorithm allow the computation of recurrence and differential equations from Rodrigues type formulas and from generating functions. In particular, these algorithms can be used to compute the differential/difference and recurrence equations for the classical continuous and discrete orthogonal polynomials from their hypergeometric representations, and from their Rodrigues representations and generating functions. In recent work, we used an explicit formula for the recurrence equation of families of classical continuous and discrete orthogonal polynomials, in terms of the coefficients of their differential/difference equations, to give an algorithm to identify the polynomial system from a given recurrence equation. In this article we extend these results be presenting a collection of algorithms with which any of the conversions between the differential/difference equation, the hypergeometric representation, and the recurrence equation is possible. The main technique is again to use explicit formulas for structural identities of the given polynomial systems.}
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  • 183
    Publikationsdatum: 2014-02-26
    Beschreibung: \noindent In molecular dynamics applications there is a growing interest in so-called {\em mixed quantum-classical} models. These models describe most atoms of the molecular system by the means of classical mechanics but an important, small portion of the system by the means of quantum mechanics. A particularly extensively used model, the QCMD model, consists of a {\em singularly perturbed}\/ Schrödinger equation nonlinearly coupled to a classical Newtonian equation of motion. This paper studies the singular limit of the QCMD model for finite dimensional Hilbert spaces. The main result states that this limit is given by the time-dependent Born-Oppenheimer model of quantum theory---provided the Hamiltonian under consideration has a smooth spectral decomposition. This result is strongly related to the {\em quantum adiabatic theorem}. The proof uses the method of {\em weak convergence} by directly discussing the density matrix instead of the wave functions. This technique avoids the discussion of highly oscillatory phases. On the other hand, the limit of the QCMD model is of a different nature if the spectral decomposition of the Hamiltonian happens not to be smooth. We will present a generic example for which the limit set is not a unique trajectory of a limit dynamical system but rather a {\em funnel} consisting of infinitely many trajectories.
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  • 184
    Publikationsdatum: 2014-02-26
    Beschreibung: This paper introduces a scheme of deriving strong cutting planes for a general integer programming problem. The scheme is related to Chvatal-Gomory cutting planes and important special cases such as odd hole and clique inequalities for the stable set polyhedron or families of inequalities for the knapsack polyhedron. We analyze how relations between covering and incomparability numbers associated with the matrix can be used to bound coefficients in these inequalities. For the intersection of several knapsack polyhedra, incomparabilities between the column vectors of the associated matrix will be shown to transfer into inequalities of the associated polyhedron. Our scheme has been incorporated into the mixed integer programming code SIP. About experimental results will be reported.
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  • 185
    facet.materialart.
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    Publikationsdatum: 2021-02-01
    Beschreibung: Increasing demands on industrial robot operation call for optimal motion planning based on dynamic models. The resulting mathematical problems can be handled efficiently by sparse direct boundary value problem methods. Within this framework we propose a new solution technique that is closely related to the conventional kinematic approach: it eliminates the need for numerical integration of differential equations. First optimization results on a real life transport maneuver demonstrate that the technique may save over 50\,\%\ computation time.
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  • 186
    facet.materialart.
    Unbekannt
    Publikationsdatum: 2014-02-26
    Beschreibung: A mixed hypergraph ${\cal H}=(X,{\cal A},{\cal E})$ consists of the vertex set $X$ and two families of subsets: the family of edges ${\cal E}$ and the family of co-edges ${\cal A}$. In a coloring every edge $E \in {\cal E}$ has at least two vertices of different colors, while every co-edge $A \in {\cal A}$ has at least two vertices of the same color. The smallest (largest) number of colors for which there exists a coloring of a mixed hypergraph $\cal H$ using all the colors is called the lower (upper) chromatic number and is denoted $\chi ({\cal H})$ $(\bar {\chi} ({\cal H}) )$. A mixed hypergraph is called uncolorable if it admits no coloring. \par We show that there exist uncolorable mixed hypergraphs ${\cal H}=$ $(X, {\cal A}, {\cal E})$ with arbitrary difference between the upper chromatic number $\bar{\chi } ({\cal H}_{\cal A}) $ of ${\cal H}_{\cal A}=(X,{\cal A})$ and the lower chromatic number ${\chi }({\cal H}_{\cal E})$ of ${\cal H}_{\cal E}=(X,{\cal E}).$ Moreover, for any $k=\bar \chi ({\cal H}_{\cal A})- \chi ({\cal H}_{\cal E})$, the minimum number $v(k)$ of vertices of an inclusionwise minimal uncolorable mixed hypergraph is exactly $k+4.$ \par We introduce the measure of uncolorability which is called the vertex uncolorability number and propose a greedy algorithm that finds an estimate on it, and is a mixed hypergraph coloring heuristic at the same time. \par We show that the colorability problem can be expressed as an integer linear programming problem. \par Concerning particular cases, we describe those complete $(l,m)$-uniform mixed hypergraphs which are uncolorable, and observe that for given $(l,m)$ almost all complete $(l,m)$-uniform mixed hypergraphs are uncolorable, whereas generally almost all complete mixed hypergraphs are colorable.
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  • 187
    Publikationsdatum: 2019-05-10
    Beschreibung: We present a self--adaptive finite element method to solve combustion problems in 1D, 2D, and 3D. An implicit time integrator of Rosenbrock type is coupled with a multilevel approach in space. A posteriori error estimates are obtained by constructing locally higher order solutions involving all variables of the problem. Adaptive strategies such as step size control, spatial refinement and coarsening allow us to get economically an accurate solution. Various examples are presented to demonstrate practical applications of the proposed method.
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  • 188
    Publikationsdatum: 2014-02-26
    Beschreibung: Let $G$ be a finite subgroup of SL$\left( r,% {\mathbb{C}}\right) $. In dimensions $r=2$ and $r=3$, McKay correspondence provides a natural bijection between the set of irreducible representations of $G$ and a cohomology-ring basis of the overlying space of a projective, crepant desingularization of ${\mathbb{C}}^r/G$. For $r=2$ this desingularization is unique and is known to be determined by the Hilbert scheme of the $G$% -orbits. Similar statements (including a method of distinguishing just {\it{one}} among all possible smooth minimal models of ${\mathbb{C}}^3/G$), are very probably true for all $G$'s $\subset $ SL$\left( 3,{\mathbb{C}}\right) $ too, and recent Hilbert-scheme-techniques due to Ito, Nakamura and Reid, are expected to lead to a new fascinating uniform theory. For dimensions $r\geq 4 $, however, to apply analogous techniques one needs extra modifications. In addition, minimal models of ${\mathbb{C}}^r/G$ are smooth only under special circumstances. ${\mathbb{C}}^4/\left( \hbox{\rm involution}\right) $, for instance, cannot have any smooth minimal model. On the other hand, all abelian quotient spaces which are c.i.'s can always be fully resolved by torus-equivariant, crepant, projective morphisms. Hence, from the very beginning, the question whether a given Gorenstein quotient space ${\mathbb{C}}% ^r/G$, $r\geq 4$, admits special desingularizations of this kind, seems to be absolutely crucial.\noindent In the present paper, after a brief introduction to the existence-problem of such desingularizations (for abelian $G$'s) from the point of view of toric geometry, we prove that the Gorenstein cyclic quotient singularities of type \[ \frac 1l\,\left( 1,\ldots ,1,l-\left( r-1\right) \right) \] with $l\geq r\geq 2$, have a \textit{unique }torus-equivariant projective, crepant, partial resolution, which is full'' iff either $l\equiv 0$ mod $% \left( r-1\right) $ or $l\equiv 1$ mod $\left( r-1\right) $. As it turns out, if one of these two conditions is fulfilled, then the exceptional locus of the full desingularization consists of $\lfloor\frac{l}{r-1} \rfloor $ prime divisors, $\lfloor\frac{l}{r-1} \rfloor -1$ of which are isomorphic to the total spaces of ${\mathbb{P}}_{{\mathbb{C}}}^1$-bundles over ${\mathbb{P}}_{{\mathbb{C}}% }^{r-2}$. Moreover, it is shown that intersection numbers are computable explicitly and that the resolution morphism can be viewed as a composite of successive (normalized) blow-ups. Obviously, the monoparametrized singularity-series of the above type contains (as its first member'') the well-known Gorenstein singularity defined by the origin of the affine cone which lies over the $r$-tuple Veronese embedding of ${\mathbb{P}}_{\mathbb{C}}^{r-1}$.
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  • 189
    Publikationsdatum: 2020-03-09
    Beschreibung: We describe an extension of the line integral convolution method (LIC) for imaging of vector fields on arbitrary surfaces in 3D space. Previous approaches were limited to curvilinear surfaces, i.e.~surfaces which can be parametrized globally using 2D-coordinates. By contrast our method also handles the case of general, possibly multiply connected surfaces. The method works by tesselating a given surface with triangles. For each triangle local euclidean coordinates are defined and a local LIC texture is computed. No scaling or distortion is involved when mapping the texture onto the surface. The characteristic length of the texture remains constant. In order to exploit the texture hardware of modern graphics computers we have developed a tiling strategy for arranging a large number of triangular texture pieces within a single rectangular texture image. In this way texture memory is utilized optimally and even large textured surfaces can be explored interactively.
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  • 190
    Publikationsdatum: 2020-03-09
    Beschreibung: A new technique for interactive vector field visualization using large numbers of properly illuminated field lines is presented. Taking into account ambient, diffuse, and specular reflection terms as well as transparency and depth cueing, we employ a realistic shading model which significantly increases quality and realism of the resulting images. While many graphics workstations offer hardware support for illuminating surface primitives, usually no means for an accurate shading of line primitives are provided. However, we show that proper illumination of lines can be implemented by exploiting the texture mapping capabilities of modern graphics hardware. In this way high rendering performance with interactive frame rates can be achieved. We apply the technique to render large numbers of integral curves of a vector field. The impression of the resulting images can be further improved by a number of visual enhancements, like transparency and depth-cueing. We also describe methods for controlling the distribution of field lines in space. These methods enable us to use illuminated field lines for interactive exploration of vector fields.
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  • 191
    Publikationsdatum: 2014-02-26
    Beschreibung: The asymmetric travelling salesman problem with time windows (ATSP-TW) is a basic model for scheduling and routing applications. In this paper we present a formulation of the problem involving only 0/1-variables associated with the arcs of the underlying digraph. This has the advantage of avoiding additional variables as well as the associated (typically very ineffective) linking constraints. In the formulation, time window restrictions are modelled by means of ``infeasible path elimination'' constraints. We present the basic form of these constraints along with some possible strengthenings. Several other classes of valid inequalities derived from related asymmetric travelling salesman problems are also described, along with a lifting theorem. We also study the ATSP-TW polytope, $P_{TW}$, defined as the convex hull of the integer solutions of our model. We show that determining the dimension of $P_{TW}$ is strongly {\em NP}--complete problem, even if only one time window is present. In this latter case, we provide a minimal equation system for $P_{TW}$. Computational experiments on the new formulation are reported in a companion paper [1997] where we show that it outperforms alternative formulations on some classes of problem instances.
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  • 192
    Publikationsdatum: 2020-03-09
    Beschreibung: In this paper we investigate whether matrices arising from linear or integer programming problems can be decomposed into so-called {\em bordered block diagonal form}. More precisely, given some matrix $A$, we try to assign as many rows as possible to some number of blocks of limited size such that no two rows assigned to different blocks intersect in a common column. Bordered block diagonal form is desirable because it can guide and speed up the solution process for linear and integer programming problems. We show that various matrices from the %LP- and MIP-libraries \Netlib{} and MIPLIB can indeed be decomposed into this form by computing optimal decompositions or decompositions with proven quality. These computations are done with a branch-and-cut algorithm based on polyhedral investigations of the matrix decomposition problem.
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  • 193
    Publikationsdatum: 2019-05-10
    Beschreibung: In this paper we present a self--adaptive finite element method to solve flame propagation problems in 3D. An implicit time integrator of Rosenbrock type is coupled with a multilevel approach in space. The proposed method is applied to an unsteady thermo--diffusive combustion model to demonstrate its potential for the solution of complicated problems.
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  • 194
    Publikationsdatum: 2014-02-26
    Beschreibung: The paper is concerned with the analysis of an $s$ server queueing system in which the calls become impatient and leave the system if their waiting time exceeds their own patience. The individual patience times are assumed to be i.i.d.\ and arbitrary distributed. The arrival and service rate may depend on the number of calls in the system and in service, respectively. For this system, denoted by $M(n)/M(m)/s+GI$, where $m=\min(n,s)$ is the number of busy servers in the system, we derive a system of integral equations for the vector of the residual patience times of the waiting calls and their original maximal patience times. By solving these equations explicitly we get the stability condition and, for the steady state of the system, the occupancy distribution and various waiting time distributions. As an application of the \mbox{$M(n)/M(m)/s+GI$} system we give a performance analysis of an Automatic Call Distributor system (ACD system) of finite capacity with outbound calls and impatient inbound calls, especially in case of patience times being the minimum of constant and exponentially distributed times.
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  • 195
    Publikationsdatum: 2014-02-26
    Beschreibung: During the last years the interest in the numerical simulation of reacting flows has grown considerably and numerical methods are available, which allow to couple chemical kinetics with flow and molecular transport. The use of detailed physical and chemical models, involving several hundred species, is restricted to very simple flow configurations like one-dimensional systems or two-dimensional systems with very simple geometries, and models are required, which simplify chemistry without sacrificing accuracy. One method to simplify the chemical kinetics is based on Intrinsic Low-Dimensional Manifolds (ILDM). They present attractors for the chemical kinetics, i.e. fast chemical processes relax towards them, and slow chemical processes represent movements within the manifolds. Thus the identification of the ILDMs allows a decoupling of the fast time scales. The concept has been verified by many different reacting flow calculations. However, one remaining problem of the method is the efficient calculation of the low-dimensional manifolds. This problem is addressed in this paper. We present an efficient, robust method, which allows to calculate intrinsic low-dimensional manifolds of chemical reaction systems. It is based on a multi-dimensional continuation process. Examples are shown for a typical combustion system. The method is not restricted to this class, but can be applied to other chemical systems, too.
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  • 196
    Publikationsdatum: 2014-02-26
    Beschreibung: Given a communication demand between each pair of nodes of a network we consider the problem of deciding what capacity to install on each edge of the network in order to minimize the building cost of the network and to satisfy the demand between each pair of nodes. The feasible capacities that can be leased from a network provider are of a particular kind in our case. There are a few so-called basic capacities having the property that every basic capacity is an integral multiple of every smaller basic capacity. An edge can be equipped with a capacity only if it is an integer combination of the basic capacities. We treat, in addition, several restrictions on the routings of the demands (length restriction, diversification) and failures of single nodes or single edges. We formulate the problem as a mixed integer linear programming problem and develop a cutting plane algorithm as well as several heuristics to solve it. We report on computational results for real world data.
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  • 197
    Publikationsdatum: 2014-02-26
    Beschreibung: We present a mathematical formulation of a \emph{frequency assignment problem} encountered in cellular phone networks: frequencies have to be assigned to stationary transceivers (carriers) such that as little interference as possible is induced while obeying several technical and legal restrictions. The optimization problem is NP-hard, and no good approximation can be guaranteed---unless P = NP. We sketch some starting and improvement heuristics, and report on their successful application for solving the frequency assignment problem under consideration. Computational results on real-world instances with up to 2877 carriers and 50 frequencies are presented.
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  • 198
    Publikationsdatum: 2020-08-05
    Beschreibung: This paper is about {\em set packing relaxations\/} of combinatorial optimization problems associated with acyclic digraphs and linear orderings, cuts and multicuts, and vertex packings themselves. Families of inequalities that are valid for such a relaxation as well as the associated separation routines carry over to the problems under investigation.
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  • 199
    facet.materialart.
    Unbekannt
    Publikationsdatum: 2014-02-26
    Beschreibung: We survey the literature on those variants of the {\em chromatic number\/} problem where not only a proper coloring has to be found (i.e., adjacent vertices must not receive the same color) but some further local restrictions are imposed on the color assignment. Mostly, the {\em list colorings\/} and the {\em precoloring extensions\/} are considered. \par In one of the most general formulations, a graph $G=(V,E)$, sets $L(v)$ of admissible colors, and natural numbers $c_v$ for the vertices $v\in V$ are given, and the question is whether there can be chosen a subset $C(v)\subseteq L(v)$ of cardinality $c_v$ for each vertex in such a way that the sets $C(v),C(v')$ are disjoint for each pair $v,v'$ of adjacent vertices. The particular case of constant $|L(v)|$ with $c_v=1$ for all $v\in V$ leads to the concept of {\em choice number}, a graph parameter showing unexpectedly different behavior compared to the chromatic number, despite these two invariants have nearly the same value for almost all graphs. \par To illustrate typical techniques, some of the proofs are sketched.
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  • 200
    Publikationsdatum: 2014-02-26
    Beschreibung: A graph $G$ is called preperfect if each induced subgraph $G' \subseteq G$ of order at least 2 has two vertices $x,y$ such that either all maximum cliques of $G'$ containing $x$ contain $y$, or all maximum indepentent sets of $G'$ containing $y$ contain $x$, too. Giving a partial answer to a problem of Hammer and Maffray [Combinatorica 13 (1993), 199-208], we describe new classes of minimally non-preperfect graphs, and prove the following characterizations: \begin{itemize} \item[(i)] A graph of maximum degree 4 is minimally non-preperfect if and only if it is an odd cycle of length at least 5, or the complement of a cycle of length 7, or the line graph of a 3-regular 3-connected bipartite graph. \item[(ii)] If a graph $G$ is not an odd cycle and has no isolated vertices, then its line graph is minimally non-preperfect if and only if $G$ is bipartite, 3-edge-connected, regular of degree $d$ for some $d \ge 3$, and contains no 3-edge-connected $d'$-regular subgraph for any $3 \le d' \le d$. \end{itemize}
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