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  • 1995-1999  (1,524)
  • 1980-1984
  • 1997  (1,524)
  • Life and Medical Sciences  (779)
  • Theoretical, Physical and Computational Chemistry  (699)
  • Nuclear reactions
  • Ultrastructure
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  • 1995-1999  (1,524)
  • 1980-1984
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  • 1
    ISSN: 1432-2307
    Keywords: Key words Inflammation of the bronchi ; Bronchial biopsy ; Ultrastructure ; Vessels ; Laser therapy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract  An ultrastructural and autoradiographic analysis of changes in 188 biopsy specimens of bronchial mucosa of the large bronchi from 76 patients with chronic inflammatory lung diseses was carried out. Fibrosis results in an apparent reduction of metabolic activity in endothelial cells, affecting the proliferation of basal cells with changes in cell differentiation. Endobronchial laser therapy with an helium-neon laser induces proliferative and metabolic processes in the lamina propria of the bronchial mucosa with hyperaemia, intensive diapedesis of leucocytes and formation of leucocytic infiltrations and granulation tissue. The proliferative and metabolic activity of endothelial and stromal cells increases, and delicate fibrous connective tissue is formed.
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  • 2
    ISSN: 1434-0879
    Keywords: Detrusor ; Fixation ; Magnesium Osmolarity ; Smooth muscle cells ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Magnesium ions added to fixatives for processing to Transmission Electron Microscopy (TEM) have been claimed to cause relaxation of detrusor smooth muscle cells [1]. This should facilitate the morphologic evaluation of the tissue. However, magnesium ions are osmotically active and their addition may cause the fixative to become hypertonic to the tissue. To ascertain whether the presence of magnesium ions causes significant changes compared to those found where the osmolarity is raised without the presence of magnesium, human detrusor specimens were fixed in glutaraldehyde to which increasing amounts of MgCl2 or NaCl were added in different concentrations. With the addition of increasing amounts of MgCl2 and NaCl, the osmolarity of the fixative increased, causing significant changes in the morphology and morphometry of the tissue. The intercellular distances increased, the cells shrank and the shape of the cells changed from smooth and rounded to spiky and angulated. With regard to its muscle-relaxing effect, it was not possible to distinguish the specimens fixed in magnesium-containing fixatives from those without. In this study it was not possible to prove any relaxing effect of magnesium ions added to the fixative. On the contrary the magnesium ions caused an increase in the osmolarity, with significant changes in both the morphometry and the morphology of the human detrusor smooth muscle cells.
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  • 3
    ISSN: 1432-0533
    Keywords: Key words Neuronal intranuclear inclusion ; Amyotrophic lateral sclerosis ; Ammon’s horn ; Ultrastructure ; Ubiquitin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract We report the presence of round eosinophilic intranuclear inclusions in a patient with sporadic amyotrophic lateral sclerosis (ALS). The inclusions were limited to the hippocampal pyramidal neurons; they were frequently encountered in the CA1 and CA2 regions and much less frequently in the CA3 and CA4 regions and in the subiculum. Ultrastructurally, they consisted of randomly oriented straight filaments, each about 8–14 nm in diameter, some of which had a tubular appearance in cross-section. Electron-dense, granular material was intermingled with the filaments. Immunohistochemically, all the inclusions were positive for ubiquitin, but were negative for several kinds of cytoskeletal protein, including actin, glial fibrillary acidic protein, vimentin, neurofilament polypeptides, keratin, tubulin, tau protein and microtubule-associated protein 2. To our knowledge, this type of neuronal intranuclear inclusion has not so far been reported in ALS, and its distribution limited to the hippocampal formation is of great interest.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 94 (1997), S. 240-246 
    ISSN: 1432-0533
    Keywords: Keywords Spectrin ; Dystrophin ; Ultrastructure ; Duchenne muscular dystrophy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Spectrin, a major component of the erythrocyte membrane skeleton, has previously been shown to form a two-dimensional lattice in erythrocytes, and in avian or chicken skeletal muscle. Those results were mainly obtained with antibodies against α-spectrin. Using immunofluorescence of semithin cryosections and single muscle fiber preparations, we show here that β-spectrin forms a costameric network which covers the plasma membrane of human skeletal muscle. These spectrin costameres are correlated with the Z-bands. They are longitudinally connected by fine strands and interrupted by myonuclear lacunae. Under mechanical stretching, the costameres retained their correlation to the Z-bands in normal and dystrophin-deficient muscle, up to the point at which the sarcolemma was disrupted. In stretched muscle, in some regions of the stretched fibers in which the costameres seemed to form double strands, the usually 1:1 correlation of spectrin to the Z-bands changed to a 2:1 relation. In dystrophin-deficient muscle, the costameric scaffold of spectrin in the well-preserved fibers appeared normal, indicating that spectrin can be correctly localized in the absence of dystrophin and that the subcellular spectrin organization does not primarily depend on dystrophin expression. The regular organization and the correlation of spectrin costameres to the Z-bands was notable even in stretched Duchenne muscular dystrophy (DMD) muscle. On the other hand, single teased muscle fibers of DMD muscle showed various degrees of morphological alterations of the costameric network, ranging from a focal disarray to complete loss of costameric organization. Because these findings indicate that the costameric spectrin scaffold undergoes secondary changes during the course of the dystrophic process in dystrophin-deficient muscle, spectrin staining of isolated muscle fibers may also serve as a tool to monitor the effect of gene therapy experiments at the single fiber level.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 93 (1997), S. 285-293 
    ISSN: 1432-0533
    Keywords: Key words Pacinian corpuscles ; Reinnervation after ; axotomy ; Regenerated axon terminals ; Ultrastructure ; Cat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The reinnervation pattern of crural pacinian corpuscles was examined by light and electron microscopy in eight adult cats of both sexes 3–18 months after sciatic nerve crush. Normal pacinian corpuscles are each supplied with a single myelinated axon and a single cylindrical axon terminal which may branch in the distal part of the inner core. Reinnervation of these vibroreceptors was very satisfactory after sciatic nerve crush: in a sample of 68 corpuscles examined 3–18 months after the operation, 92.6% were found reinnervated, while only 7.4% remained denervated. At the nerve entry, 84.2% of the reinnervated corpuscles were supplied with a single myelinated axon, while 15.8% received two myelinated axons; some of the axons branched before or after entering the inner core. Near the mid-level of the inner core, 60.3% of 63 reinnervated corpuscles were innervated with a single axon terminal, 22.2% were biterminal, while 17.5% had three or more terminals. Regenerated axon terminals induced the formation of thin lamellar layers in the axial region of the original core and, exceptionally, also at the outer aspect of the original core. In monoterminal corpuscles, the shape and ultrastructure of regenerated endings resembled those of normal controls, whereas in multiterminal corpuscles their shape and profiles were variable. In contrast to previous reports, reinnervated corpuscles did not ultimately become monoterminal. On the contrary, the mean number of 1.3 terminals found in reinnervated crural corpuscles at 3–5 months increased to 1.9 terminals per corpuscle 6–18 months after axotomy.
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  • 6
    ISSN: 1432-0533
    Keywords: Key words Regeneration ; Diffuse axonal injury ; GAP43 ; Neurofilament ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Traumatic brain injury in animals and humans is well known to cause axonal damage diffusely scattered throughout the brain without evidence of other brain parenchymal change. This observation has prompted some to posit that such damaged axons are well positioned to mount a regenerative attempt. The present study uses an immunocytochemical marker specific for regenerating neurites to explore this issue. Further, in an attempt to expedite and enhance any potential regenerative effort, this study evaluates the efficacy of intrathecally applied nerve growth factor. Three sets of experiments were performed in adult cats. One group of animals was subjected to moderate fluid percussion brain injury and followed for 7 or 14 days post injury, with the continuous intraventricular infusion of nerve growth factor delivered by implanted osmotic pumps. These animals were compared to a second group of time-matched, sham-operated animals receiving artificial cerebrospinal fluid infusion. To assess axonal damage immunohistochemical staining for the low molecular weight neurofilament subunit (NF-L) was carried out using an NR4 monoclonal antibody. To localize axons exhibiting a regenerative response immunohistochemical staining for the growth associated protein GAP43 was employed. In sham controls, at the light microscopic level NF-L-immunoreactive axonal swellings were numerous at 7 days, but by 14 days post injury their frequency declined markedly. In contrast, GAP43-immunoreactive, disconnected reactive axonal swellings were rarely observed at 7 days but were numerous at 14 days. Ultrastructural analysis at 14 days post injury of carefully matched sections revealed reactive axons demonstrating sprouting consistent with a regenerative effort. Analysis of tissue from animals of 14 days of survival indicated that supplementation with nerve growth factor did not appear to enhance the capacity of damaged brain axons to mount a regenerative attempt. Rather, it appears that regenerative efforts seen reflect a spontaneous response. A third group of adult cats, subjected to the same injury but not subjected to osmotic pump implantation, was allowed to survive for 22–28 days. Animals in this group also demonstrated GAP43 immunoreactivity in reactive axonal swellings in the brain stem. This study demonstrates that diffusely injured axons can mount a sustained regenerative attempt that is associated with a reorganization of their cytoskeleton and accompanied by an up-regulation of growth-associated proteins.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Anatomy and embryology 196 (1997), S. 215-226 
    ISSN: 1432-0568
    Keywords: Key words Natural killer cells ; Ultrastructure ; Parallel tubular arrays ; Perforin ; Granzyme B ; Chondroitin sulfate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract  Human natural killer (NK) cells contain unique granules with parallel tubular arrays (PTA granules) of approximately 30 nm diameter that can be seen only by electron microscopy. In order to clarify the role of PTA granules in NK cell-mediated cytolysis we examined these structures with regard to frequency and expression of lytic proteins (perforin, granzymes). NK cells (CD3−, CD16+, CD56+) were obtained from heparinized blood of healthy donors and enriched by double-step negative selection using mAb coupled to magnetic beads. PTA granules were found in 31.3% of freshly separated NK cells. When NK cells were cultivated, even in the presence of various stimulating agents (rhIL-2, rhIL-4, rhIL-6, rhIL-12, GM-CSF, rhIFNα, anti-CD16 mAb, dexamethasone), PTA granules disappeared and transformed into conventional primary lysosomes. By immune electron microscopy using antibodies directed against perforin and granzyme B we observed distinct immuno-reactivity in the tubules and in the tubule-associated faintly electron-dense matrix of PTA granules. Immuno-labelling for perforin and granzyme B was also found in the fine granular matrix of primary lysosomes. Finally, we tested the distribution of chondroitin 4-sulfate which is suggested to inactivate lytic proteins. Immuno-reactivity for chondroitin 4-sulfate was detected only in the moderately electron-dense matrix but not in the tubules of PTA granules. These observations indicate that perforin and granzyme B are stored in an inactive form in PTA tubules due to highly ordered paracrystalline protein folding. As soon as the tubules decay the lytic proteins are kept in an environment of chondroitin 4-sulfate for inactivation.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1432-0533
    Keywords: Key words Meningioma ; Inclusion body ; Vimentin ; Immunocytochemistry ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Intracytoplasmic inclusion bodies are rarely found in meningiomas. A 74-year-old woman had an anaplastic meningioma with intracytoplasmic chromophobe inclusion bodies (CIB) histologically. These CIB were various shapes, e.g. round, teardrop-like, fusiform, horseshoe-like, crescentic and perinuclear. The size of CIB ranged from 7 to 14 μm and the nuclei of the tumor cells with CIB were often eccentric. Most CIB were immunopositive only for vimentin, staining more intensely than surrounding cytoplasm in a comparative study using adjacent sections stained with hematoxylin-eosin and vimentin. CIB showed loosely textured filamentous structures which were in parallel and entangled arrangements ultrastructurally. The diameter of the filaments was 13–14 nm and they were thicker than normal intermediate filaments. Moreover, these filaments appeared to be studded with granular and fuzzy substances. These findings suggest that CIB are mainly composed of abnormally synthesized and arranged vimentin filaments.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 93 (1997), S. 579-584 
    ISSN: 1432-0533
    Keywords: Key words Hypobaric hypoxia ; Cerebral ; microvasculature ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Prolonged hypoxia results in structural and functional adaptive responses to improve tissue oxygen delivery. Structural changes within the brain include vascular proliferation and elongation. The aim of the current study was to investigate whether ultrastructural changes in capillary walls also occur as part of the adaptive response. Adult rats were exposed to 2 or 3 weeks of moderate hypobaric hypoxia at 0.5 atmospheres and their cerebral microvasculature examined using quantitative ultrastructural methods. We found that hypoxic rats had an 18% increase in their brain capillary diameter but no change in endothelial wall thickness, basement membrane thickness, or coverage of the endothelial wall by pericytes. The increased diameter of cerebral capillaries may play an important role in decreasing the resistance to capillary perfusion which is brought about by the increased erythrocyte fraction in the blood of hypoxic rats. Ultrastructural features relevant to the blood-brain barrier were maintained in hypoxic rats. Pericytes, that are thought to form a second line of defense in the blood-brain barrier, maintained their numerical and size relationships to the endothelial cells. Endothelial junctions were unchanged and endothelial vesicles were somewhat lower in density than normal at 2 weeks of hypoxia, but had regained their normal density by 3 weeks. Mitochondria of the brain capillary endothelial cells maintained normal numerical and volume densities in hypoxia, but the mitochondria of the surrounding neuropil were decreased significantly by about 30%.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 94 (1997), S. 425-435 
    ISSN: 1432-0533
    Keywords: Key words Cell culture ; Central neurocytoma ; Histogenesis ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract To clarify the histogenesis and differentiation potential of central neurocytoma, a pathological investigation of seven tumors from three patients was conducted using immunohistochemistry and ultrastructural analysis in addition to systematic in vitro studies. Six tumors were studied immunohistochemically and five were examined ultrastructurally. All cases that were immunostained were positive for synaptophysin in nuclear-free neuropil islands. In five tumors, a few tumor cells, in addition to reactive astrocytes, were positive for glial fibrillary acidic protein (GFAP). Vimentin staining was also positive in a few tumor cells of five specimens. Neurofilament staining was always negative. All cases for which ultrastructure was examined showed various synaptic abnormalities. Cultured cells were subdivided into three distinct tumor cell types: neuronal cells which stained for neurofilament proteins with neurosecretory granules; small flat undifferentiated cells with a high nuclear-cytoplasmic ratio and scant cytoplasmic organelles; and small round or multipolar astrocytic cells with 10-nm intermediate filaments which stained for GFAP. Our tissue culture studies disclosed that cultured neurocytoma cells form a cellular mosaic similar to subependymal plate layers that are composed of mitotically active cells, neurons and glia.
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  • 11
    ISSN: 1432-0533
    Keywords: Key words Mucopolysaccharidosis IIID ; Skin ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Mucopolysaccharidosis IIID (MPS-IIID) is the rarest of the MPS-III syndromes. It is caused by deficient activity of lysosomal N-acetylglucosamine-6-sulfatase (G6S). To date, the clinical and biochemical features of seven patients with MPS-IIID have been reported, but no biopsy or autopsy findings have been described. The purpose of this report is to define the ultrastructure of affected cells seen in a skin biopsy from a 14-year-old boy. The child presented with progressive mental deterioration, hyperactivity and mild to moderate dysmorphism. The diagnosis of a mucopolysaccharidosis was suggested, but the initial urine analyses were negative for elevated mucopolysaccharides, and only the third analysis showed abnormal excretion of heparan sulfate. Because of the diagnostic difficulties posed by this case, a skin biopsy was performed for morphological and biochemical studies. Numerous vacuoles were noted in Schwann cells, fibroblasts, smooth muscle cells, eccrine gland and ductal epithelium in resin-embedded sections stained with toluidine blue. Ultrastructurally, many lysosomes were distended with abundant, fibrillar material. Occasionally, lamellated membranous structures were present within the same lysosomes. These findings are consistent with those seen in other forms of MPS, in which the lysosomal storage occurs predominantly, but not exclusively, in mesenchymal cells. Furthermore, deficient activity of G6S was confirmed in cultured skin fibroblasts. This study demonstrates that electron microscopy of skin biopsies is a useful method for identification of patients with clinical features of MPS-IIID whether or not heparan sulfaturia is present.
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  • 12
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 94 (1997), S. 499-503 
    ISSN: 1432-0533
    Keywords: Key words Meningioma ; Immunohistochemistry ; Glial fibrillary acidic protein ; Ultrastructure ; Intercellular lumina
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract We studied a recurrent meningioma located in the right frontal lobe. The tumor showed high cellularity and the cells had plump, hyalinous cytoplasm. Immunohistochemically, almost all the tumor cells were positive for epithelial membrane antigen and vimentin, and unexpectedly, glial fibrillary acidic protein (GFAP). Ultrastructural investigation revealed abundant 8- to 10-nm filaments in the cytoplasm. Conspicuous interdigitations with numerous desmosomes were present. Frequently, intracellular and intercellular lumina lined by microvilli were also found. We considered the present case to be an unusual variant of meningioma with GFAP expression. A few cases of meningioma with triple expression of GFAP, vimentin and cytokeratin have been reported previously. However, the present case showed obvious pathological differences from these, and had no immunoreactivity for cytokeratin.
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  • 13
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 94 (1997), S. 109-115 
    ISSN: 1432-0533
    Keywords: Key words Locus coeruleus ; Ultrastructure ; Dihydroetorphine ; Morphine ; Opioids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The locus coeruleus (LC) is a major noradrenergic nucleus in the brain. The activity of the LC neurons is chronically regulated by opioids. So far, very little is known about the morphological changes induced by chronic treatment with opioids. In the present study, the effects of chronic treatment with morphine and dihydroetorphine, a new narcotic analgesic with lower physical dependence potential than morphine, were investigated on the ultrastructure of the rat LC. Rats received saline or increasing doses of morphine or dihydroetorphine for 5 days by twice daily subcutaneous injections. Withdrawal was precipitated in half of the opioid-treated rats by a single intraperitoneal injection of naloxone 4 h after the last injections of opioids. The ultrastructure of the LC was examined by electron microscopy. Results showed that chronic morphine treatment induced a marked injury to the LC neurons. The primary changes in the cell body were the indentation of nuclei, the fragmentation and degranulation of rough endoplasmic reticulum, as well as the disaggregation of polyribosomes. Myelinoid bodies were seen in the processes. An accumulation of presynaptic vesicles was observed in some of the terminals which formed synaptic junctions with the LC neurons as compared to the normal controls. Naloxone-precipitated withdrawal from morphine did not stop the morphine-induced injury on the LC neurons except that less accumulation of presynaptic vesicles occurred. Chronic dihydroetorphine treatment only induced a slight change in the ultrastructure of the LC neurons. These results indicate that the LC neurons are more vulnerable to chronic treatment with morphine than to that with dihydroetorphine.
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  • 14
    Electronic Resource
    Electronic Resource
    Springer
    Acta neuropathologica 94 (1997), S. 338-344 
    ISSN: 1432-0533
    Keywords: Key words Amyotrophic lateral sclerosis ; Pericapillary rosette ; Immunocytochemistry ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract This report concerns a comparative immunocytochemical and ultrastructural investigation on pericapillary rosettes (PR) in the lumbar spinal cords of 21 patients with amyotrophic lateral sclerosis (ALS) and 18 age-matched neurologically normal individuals. The purpose of the study was to determine the alteration of PR in relation to the neuronal loss in ALS. The PR were almost always positively immunostained for phosphorylated neurofilament, and some PR immunoreacted with antibodies to synaptophysin and β-amyloid precursor protein. This finding suggests that axonal transport, whether fast or slow, is impaired in the terminal portion of the axon that reaches the capillaries. Some PR were also positively immunostained by the antibody against ubiquitin, anti-calbindin-D 28 K antibody, anti-parvalbumin antibody and the antibody to superoxide dismutase 1. Morphometrically, the number of PR in the anterior horns and lateral column was markedly diminished in ALS compared with controls. At the ultrastructural level, the PR consisted mostly of unmyelinated degenerated axons, and were frequently found outside the basal laminae of the endothelial cell and of the astrocytic foot processes on the opposite side of the capillary, and less often in the space between the two basal laminae. The data indicate that the fate of PR is intimately associated with the neuronal loss of the anterior horn cells and with degenerative change of nerve fibers extending from their mother neurons to the capillaries.
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  • 15
    ISSN: 1432-0568
    Keywords: Key words Mineralization ; Dentine ; Ultrastructure ; Elementanalysis ; Collagen fibrils
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract  The purpose of this study was to compare the biomineralization of circumpulpal dentine with that of mantle dentine by ultrastructural and element-analytical techniques. Forty upper second molar germs of 10-day-old albino rats were cryofixed in liquid nitrogen-cooled propane and embedded in resin after freeze drying. Semithin dry sections were cut for analyzing the calcium and phosphorus concentration in initial mantle dentine, at the mineralization front of circumpulpal dentine, in the middle region of circumpulpal dentine and in mantle dentine peripheral to circumpulpal dentine. For the morphological evaluation of mineral deposits we compared ultrathin and unstained sections of cryofixed molars with chemically fixed molars. For both dentine types it was found that they develop via identical steps of mineral formation at collagen fibrils and non-collagenous matrix molecules. In circumpulpal dentine no globular mineral protrusions along the mineralization front (i.e. calcospherites) and no indications of interglobular dentine at the transition from circumpulpal dentine to mantle dentine were present. The von Korff fibres were not only visible in mantle dentine but also in circumpulpal dentine. Matrix vesicles were present only during the formation of an initial coherent layer of mantle dentine and could not be observed during successive formation of mantle dentine and circumpulpal dentine. The element-analytical data did not demonstrate any difference in the mineral content between the two dentine types. Therefore, we conclude that mantle dentine and circumpulpal dentine in the rat molar possess a high degree of structural and chemical similarity and that only the extent of terminal branching of the odontoblast processes gives an approximate estimation of the thickness of mantle dentine.
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  • 16
    Electronic Resource
    Electronic Resource
    Springer
    Anatomy and embryology 196 (1997), S. 323-333 
    ISSN: 1432-0568
    Keywords: Key words Herbst mechanoreceptors ; Sensory axons ; White Leghorns ; Japanese quail ; Ultrastructure ; Quantitative study
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract  Herbst corpuscles were studied in the crural region of perinatal and adult chicken and quail in order to find out their number and dimensions and to learn more about their structure, especially in relation to size. Crural corpuscles are arrayed in an encapsulated string between tibia and fibula. They are closely packed together; a small number of corpuscles is found apart from the string, often attached to the periost. The strings of corpuscles are approximately 40 mm long in adult chicken and 20 mm long in the quail. The crural region of the chicken contains 382.8 ± 90.9 (mean ± SD) corpuscles, the numbers ranging from 301 to 582; in the quail, the mean number is 119.2 ± 27.9, with a range from 83 to 167 corpuscles. In the chicken, one axon supplies an average of 1.60 corpuscles; in the quail, the relation of axons to corpuscles is approximately 0.92. In both species, final numbers of crural corpuscles are already attained before hatching and no difference is found in the mean number and range of corpuscles between perinatal and adult birds. In both chicken and quail, individual strings contain corpuscles of various sizes, from large to very small. The chicken corpuscles are generally twice as large in diameter and often longer than those of the quail. The corpuscles are composed of an axon terminal that projects two rows of axonal spines into the clefts of the inner core and ends with an ultraterminal bulb; the terminal is surrounded with a bilaterally symmetrical inner core, amorphous inner space containing collagen fibrils of various thickness, and a capsule. Large chicken corpuscles contain inner cores composed of up to 100 lamellae, while quail inner cores have half that number at the most. The capsules are usually composed of 8 to 10 lamellar layers in both species, but they are thicker in the chicken than in the quail. The possible functional significance of individual structural components of Herbst corpuscles is discussed.
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  • 17
    ISSN: 1432-069X
    Keywords: Key words Diagnosis ; Mechanobullous disease ; Skin ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Electron microscopy combined with morphometry was used to establish values for 24 parameters in normal skin. These results were compared with those similarly obtained from samples of epidermolysis bullosa with a view to facilitating classification of the disease. Six of the eight subtypes of epidermolysis bullosa investigated could be differentiated. Four subtypes showed values for structural components in intact skin which were outside the normal range: (1) epidermolysis bullosa simplex generalisata gravis (hemidesmosomes); (2) epidermolysis bullosa dystrophica Pasini and (3) Cockayne-Touraine (anchoring fibrils); and (4) epidermolysis bullosa acquisita (anchoring fibrils, hemidesmosomes, and lamina lucida and lamina densa aspects of the dermoepidermal junction). Two subtypes revealed specific features which could be assessed qualitatively: distinctive, circumscribed, clumped tonofilament bodies were present in basal keratinocytes from epidermolysis bullosa herpetiformis Dowling-Meara and thick (30 nm diameter) cross-striated anchoring fibrils were absent in epidermolysis bullosa dystrophica generalisata gravis. Epidermolysis bullosa simplex Köbner and Weber-Cockayne forms could not be distinguished.
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  • 18
    Electronic Resource
    Electronic Resource
    Springer
    Zeitschrift für Lebensmittel-Untersuchung und -Forschung 204 (1997), S. 121-128 
    ISSN: 1431-4630
    Keywords: Key words Surimi ; Sardine ; Starch ; Texture ; Water holding capacity ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract  The effect of waxy corn starch (WCS) on the texture, water-holding capacity and microstructure of sardine (Sardina pilchardus) surimi gels in two different systems was studied. In the type A system, increasing amounts of WCS (2, 4, 6 or 8 g/100 g surimi) were added to surimi while maintaining the gel moisture constant at 78%; in the type B system, WCS was added without correcting the gel moisture. Gels were made using two different heat treatments [heat-induced setting (HS) and direct cooking (DC)]. When starch was replaced by surimi (type A) and a heat treatment was applied that favoured formation of a preliminary actomyosin (AM) network (i.e. HS), gel strength (GS) was lower than in the control and decreased as more starch was added, despite an increase in the amount of water held by the gel. Scanning electron microscopy (SEM) showed that the matrix network was fibrillar with a globular surface. Starch appeared to be totally gelatinized and surrounded by a continuous matrix. When the amount of dry matter in gels was increased (type B), in no case did starch have a reinforcing effect, despite an increasing water-holding capacity; SEM showed a denser continuous matrix surrounding the gelatinized starch. Both types of gel made using the heat treatment that allows simultaneous gelling of surimi and gelatinization of starch (i.e. DC) exhibited much poorer GS than did HS gels, while addition of starch made practically no difference to gel texture. The findings suggest that the effect of starch is related to the type of gel matrix that forms upon addition of ingredients. Although such gels contained more water or dry matter, their texture parameters were lower, possibly because of the type of network formed by sardine surimi. Nonetheless, gels of acceptable quality were successfully made with added starch by incorporating less surimi.
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  • 19
    ISSN: 1432-2145
    Keywords: Key words Asplenium trichomanes L. subsp. trichomanes ; Ferns ; Spermatozoids ; Flagella ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  Asplenium trichomanes L. subsp. trichomanes spermatozoids are spirals of about five turns. Keels link the elements of the microtubular ribbon with the plates of the lamellar layer (LL) which are uninterrupted, parallel and curved with an inner angle of about 150°. Electron-opaque filaments connect the microtubules of the multilayered structure (MLS) and the osmiophilic crest, the LL and the MLS-associated mitochondrion and the latter and the plasmalemma. The nucleus occupies the 2.5–3 posterior turns and has an inner honeycomb-shaped chromatin mass and an outer highly condensed chromatin mass with randomly scattered electron-transparent areas. The basal bodies of the ca. 50 flagella are bounded by a reticulum of granular material which forms a plug inside their proximal region; the proximal region of the flagellum has a 9 + 0 pattern. The axoneme has a 9 + 2 pattern.
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  • 20
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    Sexual plant reproduction 10 (1997), S. 368-373 
    ISSN: 1432-2145
    Keywords: Key words Egg-cell isolation (angiosperm) ; Micromanipulation ; Plumbagozeylanica ; Viable egg ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  A protocol for isolating viable eggs in Plumbago zeylanica by mechanical dissection is reported. The optimum solution for isolation was 0.8 M mannitol + 10 mM MOPS + 10 mM CaCl2, (pH 4.5–5.0) with an osmolality of 860–940 mmol/kg. Eggs retain their viability for at least 24 h. Isolated eggs were true protoplasts without cell walls and could tolerate osmolality of 437 mmol/kg to 965 mmol/kg. Observation of the isolated eggs using transmission electron microscopy indicated that they were well preserved and reflected the ultrastructure of physiologically active cells, displaying features similar to those of in vivo egg cells. Notable differences include the absence of a filiform apparatus and the accumulation of dense particles in the plastids, which was most conspicuous in egg cells that were damaged during isolation.
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  • 21
    ISSN: 1432-0738
    Keywords: Key words 2 ; 5-di(tert-butyl)-1 ; 4-Hydroquinone ; Ca2+ ATPase inhibitor ; Neurotoxicity ; Ultrastructure ; Motor endplate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Female Wistar rats were treated orally for 5 days with 80 mg/kg body weight of 2,5-di(tert-butyl)-1,4-hydroquinone (DTBHQ), a microsomal Ca2+ ATPase inhibitor. Motor endplates of the lumbrical muscles were examined by light and electron microscopy. There was a decrease in body weight in the treated rats from the first day after administration, and toxic signs appeared after the third day, such as adoption of a prone position, salivation, lacrymation, and an abnormal gait and/or muscle weakness. No remarkable macroscopic or light microscopic changes were noted in the lumbrical muscles as well as other peripheral nerves of hind legs of the treated rats killed 1 day after the last DTBHQ treatment. Ultrastructurally, neurotoxicity characterized by loss of synaptic vesicles and mitochondria in the motor endplates, and by destruction of the motor terminals was detected in the lumbrical muscles of the treated rats. These results strongly indicate that DTBHQ targets the motor endplates in the rat lumbrical muscles and suggest that the resultant damage is responsible for the appearance of neurological signs, such as an abnormal gait and loss of muscle control.
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  • 22
    ISSN: 1432-2307
    Keywords: Key words HHV-7 ; Viral replication ; Virus morphology ; Ultrastructure ; Herpesviruses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract  Human herpesvirus 7 (HHV-7) was grown in a CD4+ lymphoblastic cell line (SupT1) and in cord blood mononuclear cells (CBMC). Virus infection was demonstrated by immunohistology with positive control sera, with monoclonal antibodies and by in situ hybridization for viral DNA. Cytopathic effects following HHV-7 infection generally resemble those after HHV-6 infection but are less pronounced. The ultrastructural appearance of HHV-7 and the replicative stages were similar to those described by Kramarsky and Sander for HHV-6. There were some minor discrepancies, including quite an extensive and space-filling tegument, a slightly different structure of the nucleoid, the frequent finding of nucleocapsids without any visible core and apparently scarce or delicate spikes on the envelope. These differences may suggest HHV-7 rather than HHV-6, but this finding needs confirmation. Mature HHV-7 particles measured 170 nm in diameter, with nucleocapsids of 90–95 nm and a tegument of about 30 nm.
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  • 23
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    Cell & tissue research 291 (1997), S. 91-95 
    ISSN: 1432-0878
    Keywords: Key words ECL cells ; Omeprazole ; Granules/vesicles ; Ultrastructure ; Stomach ; Rat (Sprague Dawley)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  The ECL cells are histamine- and peptide hormone-producing endocrine cells in the rat oxyntic mucosa. They are rich in secretory vesicles and also contain microvesicles and electron-dense granules. They operate under the control of circulating gastrin. In the present study, we examined the ECL-cell ultrastructure after long term treatment with omeprazole, which is known to induce hypergastrinemia, and after withdrawal of the drug. Rats received omeprazole (400 µmol/kg per day, orally) for 16 days and were killed 1, 5, 20, or 40 days after the last dose of the drug. Oxyntic mucosal specimens were processed for electron microscopy. Electron micrographs of ECL-cell profiles were analyzed planimetrically. The ECL-cell profile area increased promptly in response to omeprazole, the secretory vesicles and granules were reduced in number and volume density, the microvesicles were unchanged in number but reduced in volume density, and vacuoles appeared. Within a week after stopping the omeprazole treatment, the numbers and volume densities of secretory vesicles and microvesicles returned to pre-stimulation values. Also, the vacuoles disappeared promptly. The ECL-cell profile area decreased below the pre-stimulation level within five days after stopping treatment, while, in contrast, the granules increased in number and volume density. Somewhat surprisingly, the cell size and the granule compartment did not return to normal until 40 days after stopping treatment.
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  • 24
    ISSN: 1432-0878
    Keywords: Key words: Exocytosis ; Endocytosis ; Gastrin cells ; Carbamylcholine ; Ultrastructure ; Pyloric antrum ; Guinea pig (Hartley) ; Mouse (ICR) ; Rat (Sprague Dawley)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. In order to capture the exocytotic figures of gastrin cells in the pyloric antrum of the stomach, we examined antral cells of the mouse, rat, and guinea pig by electron microscopy following stimulation with the cholinergic secretagogue carbamylcholine. Increased numbers of omega profiles indicative of exocytosis were seen in the basal or lateral cell membrane after stimulation with carbamylcholine. The number of exocytotic figures in stimulated gastrin cells was higher in the guinea pig than in the mouse and rat. Coated and non-coated omega profiles and coated pits in the plasma membrane were smaller than the secretory granules. Omega profiles with or without electron-dense contents were seen. Coated and non-coated vesicles were often visible near the plasma membrane of stimulated gastrin cells in all three species, large cytoplasmic vacuoles also being found in the guinea pig. In the mouse pretreated with horseradish peroxidase, reaction deposits were observed in the omega profiles and in microvesicles near the plasma membrane. These results suggest that, after exocytosis, membrane retrieval and endocytosis occur in the gastrin cells.
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  • 25
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    Cell & tissue research 290 (1997), S. 39-42 
    ISSN: 1432-0878
    Keywords: Key words: Ciliogenesis ; Striated rootlets ; Oviduct ; Ciliated cells ; Ultrastructure ; Human
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. Striated rootlets in ciliated cells are conical banded structures composed of longitudinally aligned filaments. The formation of striated rootlets during ciliognesis in the human oviduct epithelium was studied by electron microscopy. Primitive rootlets appeared at the proximal side of basal bodies before or at the same time as ciliary budding. After the formation of several striations, the tip of the rootlets extended deeply toward the interior of the cell and became differentiated into two distinct parts, viz., the proximal conical part connected to the basal body and the distal fibrillar part. The periodicity of the striations in the fibrillar part was 68.5±2.95 nm, about 5 nm longer than that of the conical part (63.9±2.25 nm). The dark band in the striation was thicker in the fibrillar part than in the conical part. Since the fibrillar part was not observed in the mature cilium, this part was considered as being either degraded or changed into the conical part during ciliogenesis.
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  • 26
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    Cell & tissue research 290 (1997), S. 623-631 
    ISSN: 1432-0878
    Keywords: Key words: PECAM-1 (platelet/endothelial cell adhesion molecule-1) ; Endothelium ; HUVEC (human umbilical vein endothelial cells) ; Myocardium ; Ultrastructure ; Human ; Rabbit
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. The subcellular localization of PECAM-1 in endothelial cells was examined by using advanced morphological techniques, such as confocal scanning microscopy and immunolabeling procedures for electron microscopy. The localization of PECAM-1 was studied immunohistochemically with five specific monoclonal antibodies and one polyclonal antibody (all anti-human) in human and rabbit myocardium and in isolated endothelial cells. In vivo, PECAM-1 was localized uniformly on the plasma membrane of all vascular endothelial cells, predominantly on the luminal side of vessels. No specific increase in labeling was found at sites of cell-to-cell contact. In vitro, primary isolated cells (human umbilical vein endothelial cells) showed continuous labeling of the entire cell membrane. Cells of higher passages were labeled in a manner similar to freshly isolated cells. Our findings refute the commonly accepted hypothesis that PECAM-1 is localized only at cell-to-cell contacts. Further, we have not been able to confirm the hypothesis regarding the important mechanical role of PECAM-1 in stabilizing the endothelial monolayer. Since PECAM-1 is also expressed on platelets and is known to bind to itself, the way in which PECAM-1-positive endothelial cells are protected against binding of PECAM-1-positive platelets remains unclear. In view of these findings, the role of PECAM-1 in the leukocyte migration cascade needs to be re-evaluated.
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  • 27
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    Cell & tissue research 290 (1997), S. 655-664 
    ISSN: 1432-0878
    Keywords: Key words: Peroxisomes ; Ultrastructure ; Digestive gland ; Acanthochiton crinita ; Lepidochitona cinerea (Mollusca ; Polyplacophora)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract . This paper presents the first description of peroxisomes in polyplacophorans. As in other molluscs, the hepatopancreas of chitons is composed of basophilic and digestive cells. In the basophilic cells, the endoplasmic reticulum is abundant and several Golgi stacks can be observed. These cells also possess secretion granules and vacuoles with spherites. The digestive cells are mainly characterized by the presence of many food vacuoles. Several peroxisomes were observed in the basophilic cells of Acanthochiton crinita, most of them almost spherical. The matrix is filled with tubular structures and a crystalline nucleoid is also present in these organelles. In the digestive cells of A. crinita, peroxisomes are also almost spherical and possess two kinds of nucleoids. One of them presents a diamond shape and a bundle of tubular structures forms a second kind of nucleoid, which shows an elongated form. In Lepidochitona cinerea, the peroxisomes of basophilic cells are spherical or oval. Within the matrix, a cluster of dense rods and a prismatic nucleoid were observed. In the digestive cells of this species, almost spherical or oval peroxisomes are common, but they are smaller than the peroxisomes of the preceding cells. Nucleoids were not detected, but a few dense rods could be observed in the matrix. In both cell types of the two species, catalase activity was detected in the peroxisomal matrix. In addition, the elongated nucleoid of A. crinita digestive-cell peroxisomes and the nucleoid of L. cinerea basophilic-cell peroxisomes also present catalase activity.
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  • 28
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    Cell & tissue research 290 (1997), S. 71-78 
    ISSN: 1432-0878
    Keywords: Key words: Development ; Mucosal surface area ; Ultrastructure ; Villus ; Microvillus ; Morphometric analysis ; Chicken
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. The mucosal surface area of the chicken duodenum, jejunum, and ileum was determined during development (from 1-day to 12-week-old animals). The morphometric analysis was performed at three magnification levels. The nominal (serosal) surface area was determined at the macroscopic level, from intestinal length and perimeter. Villus and microvillus amplification factors were estimated at light-microscopic and transmission electron-microscopic levels, respectively. The results show, during the period considered: (1) a similar increase in nominal surface area for the three segments (6.5 to 7.2-fold), (2) a rise followed by a slight decrease in the villus amplification factor in the third week of age in the duodenum, a two-fold increase of this variable in the jejunum and no significant developmental variations in the ileum, (3) an increase in the microvillus amplification factor of 1.5-fold in the duodenum and jejunum and of 1.2-fold in the ileum, although a pronounced decrease in the first week of age was observed in the three segments. In conclusion, total mucosal surface area increased, from 1 day to 12 week, 12- to 13-fold in the duodenum and ileum and 20-fold in the jejunum.
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  • 29
    ISSN: 1432-0878
    Keywords: Key words: Kidney (proximal tubule) ; Apical tubule ; Endosome ; Ultrastructure ; Endocytosis ; Membrane recycling ; Rat (Wistar)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. The apical cytoplasm of several absorbing epithelia contains well-developed apical tubules (AT) which contribute to membrane recycling from endocytic vacuoles to the apical cell membrane. In this study, we examined three-dimensional structures of the AT in rat kidney proximal tubule cells by transmission and scanning electron microscopy. In thin sections, the AT appeared as straight tubules with a rather constant diameter (70–90 nm), but others were curved and, occasionally, branching. No AT were labeled with the marker for the external cell surface (ruthenium red) or exhibited histochemical enzyme activity for lysosomal hydrolase (acid phosphatase). After intravenous injection of horseradish peroxidase, it was absorbed in the kidney proximal tubule cells and the AT were labeled with HRP reaction products. Stereo-viewing of the labeled AT in thick sections revealed that they formed an interconnected tubular network. Scanning electron microscopy allowed a three-dimensional view of the AT, in which a network of branching and anastomosing tubules was revealed. These observations indicate that the AT are intracellular endosomal compartments which form an extensive tubular network in the apical cytoplasm. The possibility that this apical tubular network serves as a large membrane store for membrane recycling is discussed.
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  • 30
    ISSN: 1615-6102
    Keywords: Cell differentiation ; Immunolocalisation ; Nitrogenase ; Non-heterocystous cyanobacteria ; Trichodesmium ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Trichodesmium is the first described example of a filamentous cyanobacterium without heterocysts that contains cells specialised for nitrogen fixation. The ultrastructure of cells with and without nitrogenase were compared using primarilyTrichodesmium tenue Wille, but alsoT. thiebautii Gomont andT. erythraeum Ehrenberg et Gomont. Immunohistochemistry demonstrated that the cytoplasm of certain cells was densely labelled with antibodies against Fe-protein (dinitrogenase reductase). Comparative TEM-image analysis revealed that these cells were also distinguished by a denser thylakoid network, dividing the vacuole-like space into smaller units. The nitrogenase-containing cells also exhibited less extensive gas vacuoles as well as fewer and smaller cyanophycin granules compared to cells which lacked nitrogenase. Carboxysomes were present in both cell types in equal proportion. Longitudinal sections showed that cells with nitrogenase were arranged adjacent to each other, and that groups of cells with and without nitrogenase may coexist in the same trichome. The correlation between modifications in ultrastructure and the presence of nitrogenase suggests a new type of cyanobacterial cell specialisation related to nitrogen fixation. The results obtained also question the systematic affiliation of the genusTrichodesmium.
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  • 31
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    Protoplasma 200 (1997), S. 31-34 
    ISSN: 1615-6102
    Keywords: Blastocystis hominis ; Central vacuole ; Accumulation ; Basic proteins ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Basic proteins ofBlastocystis hominis were detected by the ammoniacal silver and ethanolic phosphotungstic acid techniques using electron microscopy. The central vacuole showed many silver grains when treated with ammoniacal silver and an increased electron density when treated with phosphotungstic acid. The intensity of positive reactions correlated with the electron density of the central vacuole, because cells having an electron-lucent central vacuole showed no silver grain deposits. Since it is known that the concentration of electron-dense materials in the central vacuole increases during log phase of growth, and then decreases in stationary phase, this organelle must accumulate basic proteins during cell growth.
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  • 32
    ISSN: 1573-5052
    Keywords: Algae ; Chloroplast ; Micrasterias ; Photosynthesis ; Ultrastructure ; UV-B
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Exposure of postmitotic growing and non-growing cells of the unicellular green alga Micrasterias denticulata to different UV-B cut-off wavelengths together with simulated sunlight in a sun simulator has revealed a marked resistence of the algae against strong irradiation. While down to a cut-off wavelength of 284 nm irradiated during the most sensitive stage of cell development chloroplast ultrastructure remains unaffected, severe changes in arrangement and structure of stroma and grana thylakoids occur only at the lowest cut-off wavelengths of 280 and 275 nm. The structural alterations end up in a more or less complete desintegration of grana and stroma thylakoids with the remaining membraneous structures appearing in negative staining thus indicating drastic changes in membrane composition. Photosynthetic activity determined by chlorophyll fluorescence (ratio of variable to maximal fluorescence) and oxygen evolution responded more sensitively to UV-B irradiation. With decreasing UV cut-off wavelengths and prolonged incubation a decrease of photochemistry of PS II occured reaching its lowest values after 60 min at 275 and 280 nm. Oxygen production was even maintained under strong UV irradiation with a cut-off wavelenght of 275 nm up to 15 min. With prolonged UV-B treatment any activity was lost. HPLC separations of pigments exhibited the appearance of break-down products (mainly derivatives of chl b and chl a) with decreasing cut-off wavelength and increasing exposure time. The xanthophyll cycle pigments seemed to be unaffected at least for an irradiation period of 60 to 90 min at low UV cut-offs. Possible mechanisms of UV stress avoidance or protection are discussed with regard to the varying altitudes of the natural habitats of the algae.
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  • 33
    ISSN: 1573-5117
    Keywords: Riseriellus occultus ; Heteronemertea ; Proboscis ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We have examined with transmission electron microscopythe epithelial layer exposed to the rhynchocoel fluidof the proboscis in the heteronemertine Riseriellus occultus. This epithelium is organized asa monociliated, pseudostratified myoepitheliumconsisting of two cell types: apically situatedmonociliated supportive cells and subapical myocyteslacking cilia. The low supportive cells form acontinuous adluminal sheet and reach with numerouscytoplasmic processes into the extracellular matrix;these cells are characterized by numerous, irregularlyshaped, apical folds projecting into the rhynchocoelfluid, delimiting broad extracellular spaces. Theauthors suppose that both apical and basal folds couldaccommodate stretching of the endothelium when theproboscis is everted. The apical folds of thesupportive cells increase the interface of these withthe rhynchocoel fluid; this feature, together with thepresence of pinocytotic vesicles in such cells,suggest that they could be involved in the exchange ofsubstances between the rhynchocoel fluid and theproboscis. The myocytes are scattered singly withinthe monociliated pseudostratified myoepithelium. Theyare situated between the supportive cells and thesubjacent extracellular matrix. Basement membraneseparating both cells types is lacking. Myofibrillarparts protrude basally from the myocyte somata. Themyofibrillar parts lie in direct apposition to theextracellular matrix, and are oriented circular to thelongitudinal axis of the proboscis. We consider themyocytes to be intra-epithelial, myoepithelial cells.
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  • 34
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    European archives of oto-rhino-laryngology and head & neck 254 (1997), S. 196-199 
    ISSN: 1434-4726
    Keywords: Nasopharyngeal angiofibroma ; Ultrastructure ; Myofibroblast ; Immunohistochemistry ; Electron microscopy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Twenty-eight cases of nasopharyngeal angiofibroma were studied immunohistochemically for cytoskeletal phenotyping of stromal cells. Electron microscopy was also used to study the ultrastructure of five of the tumors. All typical stromal cells showed intensive immunostaining for vimentin, but were negative for smooth muscle actin and desmin. Ultrastructurally, most of these cells appeared to be exclusively fibroblasts. However, in some areas stromal cells were seen that morphologically resembled myofibroblasts by their shapes and arrangement, and were characterized by the coexpression of vimentin and smooth muscle actin. Electron microscopy confirmed their myofibroblastic nature. The present study showed that the typical stromal cells in nasopharyngeal angiofibromas were fibroblasts and not myofibroblasts. In these tumors myofibroblasts occurred only focally, in connection with fibrotic areas and exclusively as a vimentin+/actin+ cytoskeletal phenotype. This indicates that myofibroblasts are not primary stromal tumor cells in nasopharyngeal angiofibromas, but occur due to regressive changes.
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  • 35
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    European archives of oto-rhino-laryngology and head & neck 254 (1997), S. 73-77 
    ISSN: 1434-4726
    Keywords: Development ; Stria vascularis ; Spiral ligament ; Ultrastructure ; Rat cochlea
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The ultrastructural morphology of the interface region between the stria vascularis (SV) and spiral ligament (SL) was examined in the neonatal rat cochlea via transmission electron microscopy. At postnatal day (PND) 3, morphology of both basal cells and fibrocytes was simple and immature. Only a small number of fibrocytes was observed in the SL. Intercellular junctions between basal cells and fibrocytes, and between adjacent fibrocytes, were few. At PND 7, the number of fibrocytes increased, and more organelles appeared within their cytoplasm. From PND 11 to 14, nuclei of the basal cells appeared to be more spindle-shaped and contained more heterochromatin. The cytoplasm of the fibrocytes was pale, and a greater number of cytoplasmic vesicles and mitochondria emerged. More intercellular junctions were observed between basal cells and fibrocytes at the interface region and between fibrocytes in the SL. By PND 21, the morphology of basal cells and fibrocytes and their intercellular junctionsappeared to be adult-like. These morphological observations correlate with previous reports on the functional maturation of the developing rat cochlea.
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  • 36
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    Medical molecular morphology 30 (1997), S. 31-36 
    ISSN: 1860-1499
    Keywords: Parotid gland ; Oncocytoma ; Oncocytic carcinoma ; Mitochondria ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract One case of oncocytoma and another of oncocytic carcinoma of the parotid gland are reported with ultrastructural studies. The incidence of oncocytoma varies from 0.1% to 1.4% of all parotid gland tumors, while oncocytic carcinoma is extremely rate. The oncocytoma was composed of polyhedral cells with fine eosinophilic granular cytoplasm and a rounded nucleus. The tumor cell clusters were surrounded by basement membrane. The tumor cells of the oncocytic carcinoma were also characterized by eosinophilic cytoplasm, but cellular atypia and mitotic figures were found. Electron microscopically, the cytoplasm of the oncocytoma was packed with abundant mitochondria. They were oval or elongated in shape with stacked cristae. Although the tumor cells of the oncocytic carcinoma also contained many mitochondria, their number was less than that of the benign case, and stacked cristae were very few. Basement membrane was not seen. The ultrastructural characteristics of oncocytoma and oncocytic carcinoma of the parotid gland are discussed with reference to previous reports.
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  • 37
    ISSN: 1860-1499
    Keywords: Preconditioning ; Ultrastructure ; Ischemia and reperfusion ; Adenosine receptor ; Nicorandil
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The effect of preconditioning (PC) on acute ischemic myocardial injury was investigated in an openchest dog model. Preconditioned dogs received four 5-min occlusions of the left anterior descending coronary artery (LAD), each separated by 10 min of reperfusion. Four groups were used to assess the effect: non-PC group (G-1), PC group (G-2), 8-phenyltheophylline-(adenosine receptor blocker) infused PC group (G-3), and nicorandil- (ATP-sensitive K-channel opener) infused PC group (G-4). The LAD was occluded for 60 min, followed by 60 min of reperfusion in all dogs. The rate of ultrastructural myocardial severe injury was 26% in G-1, 0% in G-2, 5% in G-3, and 0% in G-4. Biochemical analayses also indicated higher values of myocardial contractile function in G-2 and G-4 than G-1 and G-3. These data suggest that the adenosine receptor and K channel may play a key role in PC.
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  • 38
    ISSN: 1860-1499
    Keywords: Ultrastructure ; Retina ; Rat ; Oxalate ; Potassium pyroantimonate ; X-ray analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Intracellular calcium plays an important role in the intracellular signal transduction as one of the second messengers. In this study, we examined the ultrastructural distribution of calcium in rat retina, using the oxalate pyroantimonate technique and X-ray microanalysis. Large amounts of precipitates were observed inside the disc of outer segments of photoreceptor cells (OS) and the synaptic vesicles of the inner (IPL) and outer plexiform layer (OPL). Precipitates also were observed in the ribosome-rich regions in the cytoplasm and the euchromatinic part in the cell nuclei of the ganglion, amacrine, and bipolar and horizontal cells. However, few precipitates were found in the inner segment of the photoreceptor cells and the retinal pigment epithelium (RPE). X-ray microanalysis with an energydispersive X-ray detector revealed that these precipitates had a peak of antimony and calcium. Therefore, it was suggested that these precipitates were Ca[Sb(OH)6]2, the reaction products of the oxalate-pyroantimonate technique. Our findings showed that calcium precipitates are abundant in retinal regions that are related to visual transmission.
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  • 39
    ISSN: 1860-1499
    Keywords: Systemic triglyceride storage disease ; Cardiomyopathy ; Endomyocardial biopsy ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Ultrastructural changes of a biopsied myocardium were observed by transmission electron microscopy in a patient with cardiomyopathy secondary to systemic triglyceride storage disease with Jordans' anomaly. There were many lipid droplets in the cardiocytes, and lipofuscin and mitochondria were increased. The volume fraction of myofibrils in the cardiocytes decreased because of an abundance of lipid droplets and mitochondriosis. Myocardial contractility may have been reduced by myofibrillar scarcity and low energy production resulting from an abnormality in the metabolism of fatty acids in the cardiocytes.
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  • 40
    ISSN: 1860-1499
    Keywords: Oral malignant melanoma ; Ultrastructure ; Radiosensitivity ; Nucleus ; Melanosome
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract The response to radiation of the SSM-1 cell line, derived from oral malignant melanoma, was investigated by survival curve and by light and electron microscopic abservation. Survival curve of the cells was investigated by the colony formation assay. X-irradiation with 2, 4, and 8 Gy was performed against the cell line. Morphological changes of the cells at 6, 24, 72, and 120h after irradiation were examined by both light and electron microscopy. The survival curve of the SSM-1 cells showed higher radiosensitivity than that of cutaneous melanoma cell lines. Giant cells and multinucleated cells were found only 120h after 8Gy irradiation. Ultrastructural observation revealed changes in nucleus and melanosomes; melanosomes increased in number at 120h after 8Gy irradiation. Further alterations after irradiation were noticed primarily in the nucleus. Radiosensitivity of the SSM-1 cell line derived from oral malignant melanoma was higher than that of cutaneous melanoma cell lines. The results of this study may support the concept that radiotherapy is effective for oral malignant melanoma.
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  • 41
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    Medical molecular morphology 30 (1997), S. 102-109 
    ISSN: 1860-1499
    Keywords: Ultrastructure ; Rats ; Muscle spindles ; Immobilization ; Recovery
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract This study is concerned with the morphological recovery process of muscle spindles following a long period of immobilization. The right hindlimbs of rats were fixed with a plaster cast for 4 weeks. Thereafter, four groups of rats were examined by electron microscopy. One group served as the control after the cast was removed. The other three groups were examined after free walking for 4, 8, and 12 weeks, respectively. The muscle spindles (tibialis anterior muscle) of the individual animals were then ultrastructurally analyzed. The morphological alterations (of the outer capsule, intrafusal muscle fibers, and intrafusal nerve components) gradually recovered during free walking and regained almost all normal features in 12 weeks after returning to walking.
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  • 42
    ISSN: 1860-1499
    Keywords: Parathyroid gland ; Ultrastructure ; Golden hamster ; Ethanol
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Several previous studies have indicated that ingestion of ethanol can induce hypocalcemia or osteoporosis. However, few data are available concerning the effects of ethanol on the parathyroid gland. To clarify the mechanism of ethanol-induced hypocalcemia, we studied the ultrastructure to the parathyroid gland in golden hamsters after shortterm treatment with ethanol. Ethanol was administered by gavage via an intragastric tube at 6g/kg of 50% ethanol in distilled water. The mean serum calcium concentration was significantly low at 3 and 5h after administration. The Golgi complexes of the parathyroid chief cells significantly decreased 1 and 3h after administration. The lipid droplets and the large vacuolar bodies significantly increased 5h after administration. These findings suggest that the cellular activity of the parathyroid gland is suppressed after shortterm treatment with ethanol.
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  • 43
    ISSN: 1860-1499
    Keywords: Nitric oxide synthase (NOS) ; Endotoxin ; Lung ; Ultrastructure ; In situ hybridization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract To evaluate the relationship between pulmonary damage and the induction of nitric oxide synthase (NOS) in endotoxin shock, we injected 10mg/kg ofE. coli endotoxin intraperitoneally to Wistar male rats and observed the changes of the lung during the following 8h by electron microscopy, immunoelectron microscopy, and in situ hybridization. Morphological observation revealed infiltration of macrophages, aggregation of neutrophil in stasis in vascular lumens, and intraalveolar hemorrhage accompanied by epithelial damage. Endothelial constitutive NOS (ecNOS) was immunohistochemically localized in the endoplasmic reticulum of the endothelium of pulmonary arteries and in the cytoplasm of bronchial epithelial cells of control rats. After endotoxin administration, inducible NOS (iNOS) was detected in vascular endothelial cells, vascular smooth muscle cells, bronchial epithelial cells, bronchial smooth muscle cells, alveolar epithelial cells, and macrophages. Reverse transcription polymerase cham reaction (RTPCR) confirmed the expression of ecNOS mRNA and iNOS mRNA in the lung in endotoxin-treated rats and controls. In situ hybridization showed that ecNOS mRNA was expressed in vascular endothelial cells of pulmonary arteries in control rats. After endotoxin administration, iNOS mRNA was expressed in vascular endothelial cells. vascular smooth muscle cells, bronchial epithelial cells, alveolar epithelial cells, and macrophages that had infiltrated the alveolar and perivascular regions. After endotoxin administration, morphological changes and NO overproduction were observed, and it is concluded that NO may play an important role in maintaining the homeostasis of the bloodair barrier in pulmonary structures.
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  • 44
    ISSN: 1860-1499
    Keywords: Uterine cervix ; Small cell carcinoma ; Xenograft ; Immunohistochemistry ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Small cell carcinoma of the uterine cervix is a rare type of gynecological tumor that frequently expresses neuroendocrine differentiation. Its histological origin is unclear. We examined the histopathological characteristics of small cell cervical carcinoma in a patient with elevated serum adrenocorticotropin hormone. We then studied the morphological alteration in xenotransplanted tumors (passages 1–9) using immunohistochemistry and electron microscopy. The primary cervical tumor was characterized by a sheetlike arrangement of uniform small cells with hyperchromatic nuclei and a high nucleocytoplasmic ratio. A ribbon-like or trabecular pattern was also observed in a small area of the tumor. Neuron-specific enolase, chromogranin A, and S-100 were positive for the tumor cells, but cytokeratin was negative. Dense-core granules were detected by electron microscopy. In the xenografted tumor, a serial change from squamous cells to round-to-oval cells was observed. Cytokeratin was immunohistochemically stained in the squamous tumor cells but not in the other tumor cells. In contrast, chromogranin A was stained in some of the round-to-oval cells. Basal lamina underlaid the squamous tumor cells, and desmosome-like junctions were apparent. The cytoplasm was filled with well-differentiated organelles including electron-dense tonofilaments. Elliptical tumor cells resembled the primary carcinoma ultrastructurally. These findings suggest that small cell cervical carcinoma with neuroendocrine properties shares the characteristics of squamous cell carcinoma.
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  • 45
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    Journal of Physical Organic Chemistry 10 (1997), S. 305-310 
    ISSN: 0894-3230
    Keywords: non-covalent interactions ; host-guest complexes ; fluorinated phenyl compounds ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Complexation constants with the macrocyclic azoniacyclophane CP44 and phenyl guest compounds with at least four fluorine atoms or alternatively protons at the ring were obtained by NMR shift titrations in water. The fluorinated compounds show free energies of complexation which are smaller by ΔΔG=3·4-7·7 kJ mol-1 in comparison with the protonated compounds. The NMR shifts induced upon 100% complexation (CIS values) were obtained simultaneously from non-linear least-squares fitting and indicate intra-cavity inclusion in all cases. The CIS values agree roughly with screening constants calculated from aromatic ring current and linear electric field effects, the latter resulting from the permanent charges at the host compound. Molecular mechanics calculations (CHARMm) indicate that intracavity inclusion is possible with all compounds with negligible strain induced (〈1 kJ mol-1) in the macrocycle upon complexation. In contrast, α-cyclodextrin can accommodate fluorinated phenyl compounds only at the rim of the cavity without larger strain. Preliminary data with α-cyclodextrin, obtained by competitive UV-visible titration with methyl orange, indicate again a smaller association free energy (ΔΔG=1·-7 kJ mol-1) for pentafluorphenol compared with normal phenol as guest. © 1997 John Wiley & Sons, Ltd.
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  • 46
    ISSN: 0894-3230
    Keywords: hydrophobic cavity characterization ; cyclophanes ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The guest-binding behavior of two different cyclophane hosts, each being capable of providing a three-dimensionally extended hydrophobic cavity toward aromatic guests, was examined in aqueous media: a steroid cyclophane bearing four rigid cholate moieties and an octopus cyclophane having four flexible double-chain segments. Even though the binding constant for 2,7-dihydroxynaphthalene with the steroid cyclophane was comparable to that with the octopus cyclophane, the guest binding modes were very different from each other, as confirmed by 1H NMR spectroscopy. That is, the steroid cyclophane incorporates the guest into its rigid macrocyclic cavity with axial geometry whereas the octopus cyclophane provides a three-dimensional space created by the macrocyclic skeleton and the flexible hydrocarbon chains so that the long axis of the guest becomes more or less perpendicular to the molecular axis of the host upon complexation. Temperature-dependent molecular recognition by these hosts toward 8-anilinonaphthalene-1-sulfonate was examined by means of fluorescence spectroscopy. Characteristic differences in the guest-binding mode between these hosts were sensitively reflected in the thermodynamic entropy change on host-guest complexation and the temperature-dependent microscopic viscosity experienced by the guest at the binding site. © 1997 John Wiley & Sons, Ltd.
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  • 47
    Electronic Resource
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    Journal of Physical Organic Chemistry 10 (1997), S. 254-272 
    ISSN: 0894-3230
    Keywords: π-π interactions ; self-assembly ; catenanes ; cyclophanes ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The recent surge of interest in the control of molecular organization in both the solution state (i.e. self-assembly) and the solid state (i.e. crystal engineering) has led researchers to recognize increasingly the importance of weak non-covalent interactions. The design and synthesis of an efficient molecular construction set are dependent upon a very close interplay between x-ray crystallography and synthetic chemistry. π-π Stacking interactions between π-donors, such as hydroquinone, resorcinol or dioxynaphthalene residues, and π-accepting ring systems, such as bipyridinium or π-extended viologen units, can govern the self-assembly of a variety of complexes and interlocked molecular compounds in both the solid and solution states. Non-covalent bonding interactions (i.e. π-π interactions) can be considered as information vectors: they define and rule the self-assembly processes that lead to the formation of the desired molecular and supramolecular architectures, and thereafter they still govern the dynamic processes occurring within the self-assembled structures and superstructures. The manner in which such molecules and supermolecules can contribute to an understanding of non-covalent interactions at both structural and superstructural levels is described, with reference to numerous examples of self-assembly processes in synthesis, of dynamic processes in the solution state, and of the packing of molecules and molecular complexes in the solid state. © 1997 John Wiley & Sons, Ltd.
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  • 48
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    Journal of Physical Organic Chemistry 10 (1997), S. 323-334 
    ISSN: 0894-3230
    Keywords: redox-switched amphiphiles ; ferrocene derivatives ; vesicles ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Thirty ferrocene derivatives were prepared and their ability to form vesicles in aqueous solution when oxidized was assessed. The compounds included alkyl ferrocenylmethyl ether derivatives of the form C10H9FeCH2OR in which R=octyl, dodecyl, tetradecyl, hexadecyl, octadecyl and eicosanyl. One single-tailed amine derivative, C10H9FeCH2NR2, R=octadecyl, was studied. Alkylferrocene derivatives had the form C10H9FeR in which R=butyl, decyl, tetradecyl, hexadecyl, octadecyl, eicosanyl and docosanyl. Sixteen symmetrical 1,1′-disubstituted ferrocenes were also studied. Three ethers were of the form C10H8Fe-1,1′-(CH2OR),2, R=tetradecyl, hexadecyl and octadecyl. Four corresponding dialkyl derivatives of the form C10H8Fe-1,1′-R2, R=decyl, tetradecyl, hexadecyl and octadecyl, were assessed. Finally, a range of 1,1′-disubstituted ferrocene derivatives were analyzed. These all had the form C10H8Fe-1,1′-(COR)2, for which R has the following identities: octyl, tridecyl, pentadecyl and heptadecyl (ketones); heptadecyloxy, 3-cholesteryl and 3-cholestanyl (esters); and two amides, R=NHC18H37 and N(C18H37)2. The alkyl and ether derivatives could be readily oxidized and formed vesicular aggregates upon sonication. The ketones, esters and amides could be oxidized but the ferricenium derivatives did not form stable aggregates. An interesting observation is that the aggregates formed were vesicular whether the ferrocene derivative had one or two alkyl tails. © 1997 John Wiley & Sons, Ltd.
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  • 49
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    Journal of Physical Organic Chemistry 10 (1997), S. 273-285 
    ISSN: 0894-3230
    Keywords: cation-π interactions ; calix[n]arenes ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Non-covalent intermolecular forces have been recognized as a very important part of molecular interactions in complex biological systems. The fundamental functions of living matter such as transcription of genetic information in DNA, spatial arrangement of protein molecules, enzymatic functions or immunity system response are enabled owing to the presence of weak non-covalent forces based on hydrogen bonding interactions, van der Waals interactions, electrostatic interactions, hydrophobic effects, etc. Recently, among them so-called "cation-π" interactions have been proved to contribute to the overall binding process in various artificial or biological systems. Calix[n]arenes have emerged as an important family of molecules with promising applications in many branches of chemistry. Because of their suitable molecular preorganization with aromatic units being "concentrated' in a relatively small space, calix[n]arenes represent interesting compounds exhibiting an enhanced ability for cation-π interactions. The importance of such forces in calix[n]arene chemistry is demonstrated here on several recent examples. © 1997 John Wiley & Sons, Ltd.
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  • 50
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    Journal of Physical Organic Chemistry 10 (1997), S. 335-342 
    ISSN: 0894-3230
    Keywords: hydrophobic interactions ; aqueous solutions ; living systems ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Evidence is provided for the enormous role of hydrophobic interactions in aqueous solutions. It is concluded that complementary functions of hydrophilic and of hydrophobic species are in continuous operation and that these are a conditio sine qua non for the existence of the liquid. With regard to the supermolecular aggregations, hydrophobic interactions are operative on the highest hierarchic levels of the system organization, i.e. at the interface and at the holes around dissolved hydrophobic species. It is further emphasized that water is essential both for the unity and for the differentiation of each living organism. With regard to its role for the differentiation of the body, the hydrophobic interactions are of paramount importance, notably those provided by amphipathic solutes. The cell membrane is considered to be the result of interactions between the highest hierarchic levels of intracellular and extracellular water. The hydrophobic double layer provides the barriers for the separation of intracellular and extracellular water and at the same time the connections for recognition and for exchange of information between them. The DNA structures obtain conservative boundary conditions for their surrounding water systems which do not freeze at -60 °C. These water systems are dynamically superior to all other parts of the water system of the organism. It is suggested that more knowledge about the abilities of liquid water can be obtained by giving appropriate attention to its properties within the living body. © 1997 John Wiley & Sons, Ltd.
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  • 51
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    Journal of Physical Organic Chemistry 10 (1997), S. 343-346 
    ISSN: 0894-3230
    Keywords: charge-transfer complexes ; intrinsic (gas-phase) basicities ; stability ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The standard Gibbs energy changes for the formation of 1:1 charge-transfer complexes between molecular iodine and several bases in solution at 25·0 °C [ΔG0l2(soln)] were determined experimentally. The bases were 2,2,2-trifluoro- ethylamine, cyclopropylamine and 1,1,3,3-tetramethylguanidine. These [ΔG0l2(soln)] values, determined in n-heptane, and also that for the formation of the 1:1 complex between 2,2,2-trifluoroethanethiol and molecular iodine in dichloromethane, were found to follow with excellent precision the correlation equations linking ΔG0l2(soln) and the intrinsic (gas-phase) basicities of N(sp3), N(sp2) and S(sp3) bases. These findings strongly support previous conclusions regarding the relationship between gas-phase and solution reactivity data. © 1997 John Wiley & Sons, Ltd.
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  • 52
    ISSN: 0894-3230
    Keywords: molecular recognition ; non-aqueous titration ; hydrogen bonding ; proton transfer ; pKa shifts ; acid-base catalysis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Whenever hydrogen bonding is involved in molecular recognition, the possibility of a proton transfer from the donor to the acceptor arises. In most cases the pKa of the donor is far enough above the pKa of the conjugate acid of the acceptor for it to be clear that no proton transfer will occur. However, as the difference between the donor and acceptor pKas decreases, it can become difficult to predict whether a proton transfer will occur. Since most hydrogen bond-driven molecular recognition is studied in low dielectric solvents, non-aqueous titrations can be used to measure the pKas and therefore predict proton transfers. In this paper three studies which involved non-aqueous titrations are summarized. The first deals with distinguishing simple proton transfer from host-guest complex formation. The second involves measuring pKa shifts upon host-guest complex formation. The last is a study of the catalysis of a phosphoryl transfer. In all three scenarios the non-aqueous titration method gave results which would have been difficult to obtain by other means, and which proved crucial for a complete understanding of the molecular recognition process. © 1997 John Wiley & Sons, Ltd.
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  • 53
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    Journal of Physical Organic Chemistry 10 (1997), S. 347-350 
    ISSN: 0894-3230
    Keywords: benzene · · · hexafluorobenzene ; supramolecular synthon ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The benzene · · · hexafluorobenzene stacking interaction was evaluated at several levels of theory. At the MP2/6-31G** level, it is estimated that the interaction is stabilizing by approximately 3.7 kcal mol-1. Lower levels of theory perform poorly on this system. This is a fairly strong non-covalent interaction, suggesting this motif may be a valuable supramolecular synthon. © 1997 John Wiley & Sons, Ltd.
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  • 54
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    Journal of Physical Organic Chemistry 10 (1997), S. 358-368 
    ISSN: 0894-3230
    Keywords: hydrogen bonding ; RP-HPLC C18 stationary phases ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The linear free energy equationlogk′ = c + rR2 + sπ2H + a∑α2H + b∑β2 + vVxwas applied to the capacity factors for various sets of solutes on C18 stationary phases with aqueous methanol and acetonitrile eluents. Here, k′ are the capacity factors for a series of solutes with a given C18 phase and a given eluent, and R2, π2H, ∑α2H, ∑β2, Vx are parameters or descriptors of the solutes as follows: R2 is an excess molar refraction, π2H is the solute polarizability/dipolarity, ∑α2H and ∑β2 are the solute hydrogen-bond acidity and basicity and Vx is the solute volume. It is shown that although the regression coefficients r, s, a, b and v vary widely within the C18 column and mobile phase used, the ratios r/v, s/v, a/v and b/v are remarkably constant. Thus, for the retention of 25 series of solutes on six different C18 columns with 30-90% aqueous methanol as the eluent, all the 25 LFER equations can be combined into one general equation:logk′ = c + v(0.13 R2 - 0.32 π2H - 0.22 ∑α2H - 0.90 ∑β2O + 1.00 Vx)where only c and v vary from system to system. For 11 other phases for which data are available, the ratios v/A and (v + c)/A are constant, where A is the quantity of stationary phase per unit surface area. Similar results were found with C18 phases and aqueous acetonitrile as eluents. Although a first examination of equations based on the first equation above suggests that various C18 phases behave differently, for example the v coefficient, that is related to the observed hydrophobicity of a stationary phase relative to the mobile phase, varies considerably from phase to phase with the same eluent, a detailed analysis led to the conclusion that all the C18 phases examined have roughly the same hydrophobicity, when the v coefficients are corrected for the quantity of stationary phase per unit surface area. It is suggested that these corrected v coefficients, v/A and (v + c)/A, can be regarded as the ‘intrinsic’ phase hydrophobicity. © 1997 John Wiley & Sons, Ltd.
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  • 55
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    Journal of Physical Organic Chemistry 10 (1997), S. 286-291 
    ISSN: 0894-3230
    Keywords: chiral recognition ; cyclodextrins ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The mechanisms for chiral recognition by cyclodextrins (CDxs) are discussed. Examples of host-guest systems where the "lock-and-key mechanism" and the "three-point rule" are applicable are cited and discussed. Most results reported so far suggest that the ability of native CDxs and chemically modified CDxs to discriminate between enantiomers of guests having a central chirality is low in aqueous solutions. Small ΔΔG values for enantioselective complexation of CDxs with amino acids seem to be due to unpredictably small changes in the structures of the complexes of the guest enantiomers. Therefore, it is very difficult to prove the participation of hydrogen bonding in chiral recognition through the "three-point rule" in these systems. The use of the Coulomb interaction and the coordinate bonds as point interactions is discussed. CDxs might be good hosts to recognize axial chirality or helicity of guests. Hydrogen bonding in water is assumed in the recognition of the helicity of bilirubin. Very large ΔΔG values have been reported for the chiral recognition of the binaphthyl derivatives. Such a system seems to be a suitable model system to study the mechanism of chiral recognition by CDxs. © 1997 John Wiley & Sons, Ltd.
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  • 56
    ISSN: 0894-3230
    Keywords: aryliminodimagnesium ; condensation with NO2 and CO groups ; addition to CN group ; single electron transfer efficiency ; σ-complexation ability ; inter- and intramolecular competition ; bifunctional substrates ; positional effect of functional groups ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The reactions of aryliminodimagnesium [ArN(MgBr)2, IDMg] with p′-substituted p-cyanobenzophenones, 1-cyano-9-fluorenone, o-, m- and p-dicyanobenzenes and o-, m- and p-nitrobenzonitriles were examined, and the relative yields of products were referred to the previous results of electron spin resonance studies. The products of condensation with carbonyl and nitro groups and of addition to cyano groups were formed. From the variations of the yields caused by the molar ratio of the magnesium reagent versus substrates and by the substituents of both reactants, the preferred groups were determined. The groups of p- and m-substrates are consistent with the position of highest density of free electrons in the anion radicals, whereas those of the o-substrates are inconsistent. The consistency indicates competition of functional groups reflecting the relative ability of single electron acceptance from the reagent, whereas the inconsistency is ascribed to cooperation of neighbouring groups for σ-complexation with the Mg atom of the reagent. The categories of competition and cooperation are discussed in relation to fundamental features and general governing factors proposed for the IDMg reactions of monofunctional substrates. © 1997 John Wiley & Sons, Ltd.
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  • 57
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    Journal of Physical Organic Chemistry 10 (1997), S. 383-395 
    ISSN: 0894-3230
    Keywords: hydrogen bond strength ; organic groups ; isotopic substitution ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Although the electronic contribution to the strength of a H-bond is unaffected by isotopic substitution, the heavier mass of deuterium compared with protium lowers some of the vibrational frequencies in the complex. The binding energy of the complex, which includes zero-point and thermal vibrational energies, can thus be altered by several tenths of a kcal mol-1 by H/D substitution. Ab initio calculations are used to analyze this phenomenon in a number of common organic functional groups that are prone to form H-bonds: hydroxyl, carboxyl and amide, both self-complexing as homodimers and with water molecules as partners. It is found that any site of D-substitution increases the complexation energy; however, the bridging sites show a stronger preference for D over H than do the non-bridging, or terminal, sites. Hence D-bonding can be considered to be stronger than H-bonding in these functional groups. Of the groups considered, the energetic preference for D over H is greater in the hydroxyl group, so deuterium would be expected to gravitate toward solvent water molecules in isotopic scrambling experiments. The increments in H-bonding energy resulting from each site of substitution are addititve in cases of multiple substitution. © 1997 John Wiley & Sons, Ltd.
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  • 58
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    Journal of Physical Organic Chemistry 10 (1997), S. 253-253 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
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  • 59
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    Journal of Physical Organic Chemistry 10 (1997), S. 405-413 
    ISSN: 0894-3230
    Keywords: non-covalent interactions ; thermodynamic hydrogen bond parameter ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---This paper describes how empirical free energy and/or enthalpy values for hydrogen binding strength are derived from thousands of corresponding measurements between H-bond donors and acceptors, mostly in carbon tetrachloride, and how they can be used to construct common scales or factor values (increments) also for other reactions involving electron donor and acceptor ability of functions. The corresponding databases and programs (HYBOT) allow one to predict thermodynamic values for experimentally unknown equilibria, including also ionophore complexes with crown ethers or cryptands. Applications in QSAR involve the prediction of lipophilicity from any structure on the basis of only two variables, e.g. 234 systems are described this way with a correlation coefficient r=0·96. Similarly, permeabilities and some biological properties such as narcotic activities of chemicals and anti-HIV-1 activity of some porphyrins are evaluated. © 1997 John Wiley & Sons, Ltd.
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  • 60
    ISSN: 0894-3230
    Keywords: inclusion complexation ; cyclobis (paraquat-p-phenylene) ; cyclophanes ; substituted aromatics ; cooperative non-covalent cavity ; external interactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The cooperative nature of non-covalent interactions which give rise to inclusion complexes involving cyclobis(paraquat-p-phenylene), 14+, and related cyclophane derivatives, 24+-44+, with substituted 1,4-phenyl and 4,4′-biphenyl guests has been studied by spectroscopic techniques and ab initio and semiempirical molecular orbital methods. Inclusion complex formation and stability are primarily determined by the combination of two main interaction modes involving aromatic stacking of the guest within the cyclophane cavity and external interactions between guest side arms and the exterior of the cyclophane. A balance between cavity and external forces results in supramolecular association and is shown to change depending upon the functionality and substitution of the guest. Cavity binding was probed using 1,4-phenyl and 4,4′-biphenyl guests, where for the 1,4-phenyl guests the primary basis for energy stabilization with 14+ is found to be short-range stabilizing electrostatic forces complemented by small amounts of polarizability and charge-transfer. In contrast, the cavity binding between substituted 4,4′-biphenyl guests and 14+ is determined by almost equal contributions of polarizability and electrostatics. The effect of solvent is shown to have only a small effect on the computed geometry of 14+ complexes, but its impact upon binding energies is substantial. The first solvation shell of the cyclophanes is computationally approximated by 12 acetonitriles and satisfies the requirements of the 16 relatively acidic protons on the bipyridinium groups. Good correlations between the computed (with solv ation) and experimental 14+ binding energies are found. The degree of linear correlation improves substantially when the comparison between computed and experimentally observed binding energies is restricted to structurally similar (number of aromatic rings, number of substituents and position of substitution) molecular guests. Furthermore, computed molecular properties, such as polarizability, maximum hardness, softness and electronegativity of the isolated guests, correlate well with 14+ binding energies based upon the same requirement of guest similarity. The non-covalent forces associated with the external cyclophane interactions were studied with guest molecules built from symmetrical 1,4-extensions of hydroquinone composed of aliphatic or ethyleneoxy side arms. In particular, side arm length and functionality, and the position and type of heteroatoms along the chain, were systematically varied to define the external interactions between the guest side arms and different host cyclophanes. Specifically, the ethyleneoxy linkages are shown to provide a large chelate and cooperative effect which direct the binding with 14+. In order to probe further the special geometric and electronic character of 14+, we have synthesized and tested a new supramolecular host, 24+, similar to 14+ but where a pentacycloundecane unit replaces one of the xylyl groups. Both experimental and computed data on the new host emphasize the ideal geometry and electronic nature of the 14+ molecular receptor for aromatic guests. The inclusion complexes discussed in this paper are important not only because they, or similar entities, are the main components of many rotaxanes, catenanes and other switchable molecules, but because the intermolecular interactions involved, such as electrostatics, polarizability and charge-transfer, are ubiquitous in supramolecular chemistry. The information reported on the specific interactions involving the 14+-44+ molecular receptors with substituted aromatic guests can also be extended by analogy to many systems of broad interest. © 1997 John Wiley & Sons, Ltd.
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  • 61
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    Journal of Physical Organic Chemistry 10 (1997), S. 233-241 
    ISSN: 0894-3230
    Keywords: surface effects ; radical anions ; benzoyl radical ; coupling of radicals ; surface catalysis ; electron transfer ; reactions in the double laye ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Benzaldehyde in THF reacts with lithium metal to give the expected reduction product, benzyl alcohol, plus benzoin and benzyl as minor products. The kinetics of the overall reaction as well as the partial rate coefficients of the several steps have been determined under various reaction conditions. It was found that adsorption on the surface and electron transfer from the lithium to benzaldehyde are the slow steps. The experimental results show interesting surface effects, and evidence for significant radical intermediates, which were characterized by their epr spectra and trapping experiments, results useful to gain insight into the mechanisms of these and other related reactions. © 1997 John Wiley & Sons, Ltd.
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  • 62
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    Journal of Physical Organic Chemistry 10 (1997), S. 292-304 
    ISSN: 0894-3230
    Keywords: calixarenes ; bipyridine ; lanthanides ; luminescence ; preorganization ; solvent effect ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Based on MD simulations, the structures of Eu3+ and EuCl3 complexes of bipyridine-substituted calixarenes in different environments (in vacuo and in acetonitrile and water solutions) were modelled. The data account for the differences in their luminescence properties. The role of the calixarene platform, preorganization of the ligands, and an explicit account of counterions in different environments are analysed. © 1997 John Wiley & Sons, Ltd.
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  • 63
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    Journal of Physical Organic Chemistry 10 (1997), S. 311-322 
    ISSN: 0894-3230
    Keywords: enantioselective binding ; gas chromatography ; chiral selection ; permethyl-β-cyclodextrin ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Stochastic molecular dynamics simulations were used to determine the enantiomer retention orders of moderately polar analytes binding to permethylated β-cyclodextrin, a popular chiral stationary phase used in gas chromatography. It is found that averaging over multiple trajectories, each of which are lengthy, is required to faithfully reproduce experiment. From the simulations we find the major binding domain to be the interior of the macrocycle rather than the exterior with most analytes having a preference for associating to the primary rim rather than to the secondary rim. It is also found that the intermolecular forces responsible for holding the complexes together are the short range dispersion forces, and that the enantiodifferentiating forces of the competing diastereomeric complexes are dominated by the van der Waals contributions to the intermolecular energy. © 1997 John Wiley & Sons, Ltd.
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  • 64
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    International Journal of Quantum Chemistry 61 (1997), S. 11-20 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An algorithm for the evaluation of matrix representations of products of permutation operators and of one- and two-electron spin-dependent operators in a spin-adapted basis of the N-electron spin space is presented. In particular, the case of the basis functions in which p' electrons are described by products of singlet-coupled pairs is considered in detail. The N-electron spin integrals are, in this case, reduced explicitly to the (N - p') electron ones. © 1997 John Wiley & Sons, Inc.
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  • 65
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    International Journal of Quantum Chemistry 61 (1997), S. 77-83 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The one-particle density in momentum space γ(p) is studied for diatomic molecules by using the maximum-entropy technique. The knowledge of one or more momentum expectation values 〈pn〉 provides approximations on the density γ(p) for any value of the momentum, which are convergent when increasing the number of known moments. Other unknown expectation values are estimated in terms of the constructed maximum-entropy densities. A numerical study of the quality of the approximations is carried out by means of experimental and theoretical data for the momentum expectation values involved. Experimental errors are also taken into account to have an idea of the sensibility of the results to the information from which they are obtained. © 1997 John Wiley & Sons, Inc.
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  • 66
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    International Journal of Quantum Chemistry 61 (1997), S. 107-116 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: With large Hylleraas-configuration interaction (CI) basis sets highly accurate upper bounds for the lowest 2Po states of the Li isoelectronic series up to Ne are given. The corresponding Hamiltonian H and the operator Σi 〈 j, ▿i ▿j are transformed into nonorthogonal coordinates expressed in interparticle and angular terms. The evaluation of the occurring integrals is reduced to the calculation of well-known auxiliary integrals. Furthermore some expectation values and isotope energies are calculated. The isotope energies are obtained using perturbation theory in first-order approximation. © 1997 John Wiley & Sons, Inc.
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  • 67
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    International Journal of Quantum Chemistry 61 (1997), S. 21-34 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Matrix element formulas for spin-dependent operators in a basis of spin-adapted antisymmetrized products of orthonormal orbitals (configuration-state functions) are presented. The coefficients of one- and two-electron integrals depend only on the form of the spin-dependence of the operator and on the mutual arrangement of the orbitals which are singly occupied in the pertinent pair of the configuration-state functions. The formulas are useful in implementations of relativistic two-component CI approaches, such as the Pauli CI and projected no-pair CI method. They may be readily used within existing nonrelativistic SGA - CI codes. As examples of applications of the new formulae, spin-own-orbit and scalar spin - spin matrix elements were derived. © 1997 John Wiley & Sons, Inc.
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  • 68
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    International Journal of Quantum Chemistry 61 (1997), S. 67-76 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A variation of the frozen-core potential (FCP) method is developed and implemented within the modified version of the method of partial retention of diatomic differential overlap (PRDDO/M). The explicit treatment of core electrons is replaced with a potential based on the actual core-valence integrals rather than upon an arbitrary model potential. The core-valence orthogonality requirement is replaced by an energy shift operator. PRDDO/M/FCP calculations exhibit good agreement with ab initio calculations with the same basis set, while reducing the computational cost significantly. © 1997 John Wiley & Sons, Inc.
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  • 69
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    International Journal of Quantum Chemistry 61 (1997), S. 101-105 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correlation-function potential-harmonic and generalized Laguerre function method (CFPHGLF) proposed recently by us is used to directly solve the Schrödinger equations of low-lying triplet states n3S (n = 2-5) for a set of heliumlike systems, including He, Li+, and Be2+. The eigenenergies converge fast and steadily with potential harmonics (PH) and generalized Laguerre functions (GLF). With 10 PH, the percentage errors in the convergent ionization energies for 23S, 33S, 43S, and 53S states of the helium atom are 0.548, 0.291, 0.247, and 0.265% relative to the Hylleraas CI variational values. Somewhat better precision is achieved for Li+ and Be2+ systems. © 1997 John Wiley & Sons, Inc.
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  • 70
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    International Journal of Quantum Chemistry 61 (1997), S. 153-153 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 71
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    International Journal of Quantum Chemistry 61 (1997), S. 181-196 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The charge response quantities of the Lewis acid (A)-basis (B) reactants, reflecting their actual interaction in A-B, are recommended as tools for diagnosing trends in chemical reactivity. These truly two-reactant quantities preserve the memory of the reaction stimulus generated by the presence of the other reactant and are mainly localized in the reaction region. The Fukui function indices (FFI) of separated and interacting reactants are resolved into the pure charge transfer (CT) and CT-induced polarization (P) components, respectively, and a role of the reactant charge relaxations, accompanying the primary charge displacements on the reaction partner is investigated in more detail. The associated reactant off-diagonal responses are included in the resultant in situ FFI, in addition to the usual reactant diagonal contributions. The new collective populational reference frames reflecting the mutual interaction between reactants are introduced and used to describe the FFI of open and closed (isoelectronic) A-B systems. They include the relaxed normal modes of the reactants, externally decoupled modes from the maximum overlap criterion, and the interreactant coupling modes. Their use in describing the open-and closed-system responses in systems consisting of large reactants is tested by illustrative applications to model chemisorption systems: toluene-[V2O5] and water-[(110)-rutile]. The interaction-shaped responses are shown to reflect the chemistry of these surface complexes much better than the corresponding separated reactant quantities; the interaction-dependent coordinate systems are shown to give rise to the most compact description of the relevant CT processes. © 1997 John Wiley & Sons, Inc.
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  • 72
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    International Journal of Quantum Chemistry 61 (1997), S. 541-546 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The hydrated gadolinium(III) ion cluster Gd3+ (H2O)x, with x = 8,9, was studied using density functional theory. The different conformations of the first hydration shell were calculated. For x = 8, the results for the cubic conformation correspond to previously published Hartree-Fock and MP2 results, whereas much lower energies were found for the square antiprismatic and dodecahedral conformations. For x = 9, the energy of the tricapped trigonal prism is nearly identical to the one of the antiprism plus an extra free water molecule. © 1997 John Wiley & Sons, Inc.
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  • 73
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The geometrical and spectroscopic parameters of SiF2, SiCl2, GeF2, GeCl2, SnF2, and SnCl2 were determined using the linear combination of Gaussian-type orbitals-local spin density (LCGTO-LSD) method and employing both the local (LSD) and nonlocal functionals (NLSD) for the exchange-correlation energy. A general good agreement with available experimental information and with previous high-level correlated computations was found. Data on cations and anions are reported for the first time and can be used, together with those on neutral systems, to stimulate future and desirable experimental work on this significant class of molecules. © 1997 John Wiley & Sons, Inc.
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  • 74
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    International Journal of Quantum Chemistry 61 (1997), S. 579-588 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Optical excitation energies of MnO-4, CrO2-4, and RuO4 are calculated using the density functional methodology. A short outline of some important developments in this theory for the determination of excited-state properties is given. A practical working procedure for the calculation of transition energies including multiplet splitting is described. This method is based on a transition-state approach which is connected, as will be shown, to Slater's transition-state concept. Results obtained by this working procedure are compared to the energy differences between separately converged configurations of ground and excited states and the corresponding multiplet structure, denoted as the ΔSCF calculation in the following. © 1997 John Wiley & Sons, Inc.
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  • 75
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    International Journal of Quantum Chemistry 61 (1997), S. 635-639 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of the cubo-octahedral Au13 cluster was investigated within a self-consistent molecular-orbital Slater-type-orbital framework. The scalar relativistic calculated density of states (DOS) for the gold cluster under consideration show relatively similar features to those obtained experimentally or theoretically earlier calculated by fully relativistic methods. © 1997 John Wiley & Sons, Inc.
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  • 76
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    International Journal of Quantum Chemistry 61 (1997), S. 647-656 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Calculations of the directional Compton profiles and the anisotropies of Compton scattering are reported, based on the density functional theory in the local density approximation, performed in the plane-wave basis, and using full, unscreened Coulomb potentials for both Li and H atoms. It is shown that converged results can be obtained without employing pseudopotentials, and the Compton profiles obtained are in excellent agreement with experiment. The influence of correlation on Compton profiles in LiH is found to be very weak. Possibilities (and limits) of extending the plane-wave calculations with the full Coulomb potentials to other atoms and substances are discussed. © 1997 John Wiley & Sons, Inc.
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  • 77
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    International Journal of Quantum Chemistry 61 (1997), S. 705-709 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structures of U2Fe2Sn and UFe2Ge2 are self-consistently calculated within the local density functional theory using the augmented spherical wave (ASW) method. Calculations are scalar relativistic. The experimentally observed Pauli paramagnetic behavior of the two systems is accounted for and the influence of hybridization between the different l-states on the chemical bonding is discussed from the site-projected densities of sates (DOS) as well as from the modulation of the DOS by the sign and magnitude of the overlap integral, i.e., with the so-called COOP. From this, we propose a mechanism for the evolution of bonding within the series to which the two compounds belong. © 1997 John Wiley & Sons, Inc.
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  • 78
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    International Journal of Quantum Chemistry 61 (1997), S. 711-717 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: LDA-LCAO molecular orbital calculations were carried out on various clusters modeling a tungsten tip and an Al(100) surface interaction. The surface is depicted by Alx aggregates (x varying from 5 to 66) while the tip is modeled by Wy clusters (y = 1,5,10,14). Electronic structures were obtained for isolated aluminum and tungsten clusters and for interacting Alx(SINGLE BOND)Wy ones. For the latter, the W-A1 equilibrium distance was determined from the total energy results. Total and local densities of states were analyzed vs. cluster sizes. The occupied bandwidth, the Fermi level, and LDOS structures become stable from x equal to 25. Electronic structures obtained through the cluster description are in rather good agreement with a slab calculation for the surface using the same theoretical approach and with other theoretical calculations. The general trends of Al(SINGLE BOND)W interactions are discussed. © 1997 John Wiley & Sons, Inc.
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  • 79
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    International Journal of Quantum Chemistry 61 (1997), S. 741-746 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The model based on the assumption of the existence of an interatomic distance-dependent, local, effective crystal field applied to the alkaline metals (Int. J. Quantum Chem. 52, 321-328 (1994)) is modified and applied to the diamondlike structure crystals (C, Si, Ge, Sn). In the referred to model, a part of the electron density was missed - not included in the calculation (the density in the spaces between the shells). Such an approach could be used for the alkaline metals, but for the covalent crystals, this is a bad approximation. To avoid that problem, we assumed that the atom shells can overlap in such a way that the entire electron density is taken into the calculation. In this case, the electron density is “moved” from the outside of the shells mostly into the interatomic bond region. We applied the modified model to the calculation of the binding energy and the bulk modulus for the diamondlike crystals. The results show that well-chosen parameters allows one to reproduce the proper values of the binding energy at the equilibrium position. The bulk moduli calculated for these crystals are in quite good agreement with ones calculated as (regular crystal structure) B = 1/3(C11 + 2 C12), where C11 and C12 are elastic constants. © 1997 John Wiley & Sons, Inc.
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  • 80
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Previous ab initio computations revealed that the conformational building unit of the right-handed helix (φ ≈ -54°, ψ ≈ -45°) is not an energy minimum on two-dimensional-type Ramachandran potential energy surfaces (E = E{φ, ψ}). Theoretical investigations were performed on several single-amino-acid diamides such as For-Gly-NH2, For-L-Ala-NH2, Ac-L-Ala-NHMe, and For-L-Val-NH2 containing amino acid residues (e.g., Ala) which can often be found in helices as shown by X-ray data analysis of globular proteins. The current ab initio [self-consistent field (SCF)] results (based on four different basis sets [3-21G, 4-21G, 4-21G*, and 6-31G*]) presented point toward an intrinsic (i.e., non-environmental-assisted) stability of the right-handed helical subconformation of a simple amino acid diamide if the residue contains a polar side chain. Such is the case for a serine derivative when its (SINGLE BOND)CH2OH side chain is favorably oriented. For the For-L-Ser-NH2 model compound two slightly different right-handed helical backbone conformations were determined. Depending on the relative orientation of the side chain, the conformational monomer of the 310 helix (a sharper helical structure with an [i, i + 3]-type H-bond network) as well as the building block of the “standard” α-helix (the regular helical structure with an [i, i + 4]-type H-bond network) were determined computationally by geometry optimization. © 1997 John Wiley & Sons, Inc.
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  • 81
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    International Journal of Quantum Chemistry 61 (1997), S. 847-857 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electron exchange between allyl molecules is studied using quantum chemical ab initio methods in order to model interchain electron transfer (ET) in polyacetylene. The reaction path, reorganization energy for ET (λ), and the electronic factor (Δ) are calculated using the UMP2, CASSCF, CASPT2, and CASSI methods. Changes in bond lengths are very small and their contribution to the internal reorganization energy almost negligible. Only changes in the bond angle leave significant contributions to the reorganization energy. The calculated potential energy surfaces can be represented as interacting parabolic-well potentials only in the case of CASSI. The UMP2, CASSCF, and CASPT2 methods give the localization of the electron even in the symmetric case and incorrect energy surfaces, with a cusp at the symmetry point. The electronic factor Δ is calculated using the two different methods, Koopmans' theorem and CASSI, with the same basis set. They are quantitatively very close for all intermolecular distances under study. However, Δ is sensitive to the basis set and cannot be calculated accurately in the present case. © 1997 John Wiley & Sons, Inc.
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  • 82
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    International Journal of Quantum Chemistry 61 (1997), S. 899-918 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This article deals with the calculation of the shielding tensor of nuclear magnetic resonance (NMR) spectroscopy based on a scalar relativistic two-component Pauli-type Hamiltonian. A complete formulation of the method within the framework of the gauge including atomic orbitals (GIAO) is given. Further, an implementation, based on density functional theory (DFT) is presented. The new method is applied to the 17O shielding in transition-metal oxo complexes [MO4]n- (M = Cr, Mo, W; Mn, Tc, Rh; Ru, Os) and to the metal chemical shift in transition-metal carbonyls M(CO)6 (M = Cr, Mo, W). This represents the first calculation of heavy-element shifts that is based on a relativistic first-principle quantum mechanical method. The inclusion of relativity is crucial for a proper description of ligand and metal shieldings in 5d complexes, but it is also important in 4d complexes. Limitations of the method, among them the neglect of the spin-orbit coupling, are discussed in detail. © 1997 John Wiley & Sons, Inc.
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  • 83
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    International Journal of Quantum Chemistry 61 (1997), S. 935-941 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Correlation of a quantum many-body state makes the one-particle density matrix nonidempotent. Therefore, the Shannon entropy of the natural occupation numbers measures the correlation strength on the one-particle level. Here, it is shown how this general idea of a correlation entropy must be adapted for two-electron systems in view of conservation laws which mix Slater determinants even in the noninteracting limit. Results are presented for the correlation entropy s of H2 as a function of the nucleus-nucleus separation R. In the ground state, the entropy of the spatial factor of the wave function maximizes 1.7 bohr beyond the Coulson-Fischer separation. The role of the correlation entropy in density functional theory is also discussed. © 1997 John Wiley & Sons, Inc.
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    International Journal of Quantum Chemistry 61 (1997), S. 981-990 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Geometry optimization of small (H2O)n+ clusters (n ≤ 4) at the UHF/4-31 + + G** level indicates that the cations consist of two fragments: the OH radical and the H2n-1 O+n-1 ion. The latter can be considered as a thermodynamically stable combination of a distorted H3O+ ion and (n-2) H2O molecules. The H bond between the fragments becomes weaker with increasing cluster size. Extrapolation of the adiabatic ionization potentials calculated for the (H2O)n oligomers (n ≤ 4) at the MP2 level to an infinite cluster size provides the value of approximately 8.7 eV, which can be presumably necessary for the ionization of liquid water in a vacuum. © 1997 John Wiley & Sons, Inc.
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 62 (1997), S. 125-135 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We apply an algebraic technique to describe the evolution of a parametric harmonic oscillator forced by a constant quartic potential. As the first step, we make use of iterative Bogolubov transformations (IBT) to incorporate information from the anharmonic part of the interaction in a nonperturbative form, yielding a unitary time-evolution operator. Later on, we make use of first-order perturbation theory to deal with that part of the interaction which was not incorporated previously. We show numerically that the resulting time-evolution operator is closer to unitarity than is the one obtained if no IBT is applied. The quantum fluctuations of position and momentum are evaluated for “the ground” state. Squeezing and correlation effects are observed. © 1997 John Wiley & Sons, Inc.
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  • 86
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    International Journal of Quantum Chemistry 62 (1997), S. 153-165 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In any optimization using the augmented Hessian technique, the step is not restricted to any length. Since the restriction of the step at each iteration is very important in order to achieve good convergence, we present a coupled method such that the augmented Hessian automatically gives both the adequate length of the step and the correct Hessian structure. The method is showed for the minima and saddle points of any order. © 1997 John Wiley & Sons, Inc.
    Additional Material: 6 Ill.
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  • 87
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    International Journal of Quantum Chemistry 61 (1997), S. 665-671 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The self-consistent reaction field scheme for taking into account solvent effects was implemented in the density functional deMon program. Both the electrostatic and the dispersion contributions of solute-solvent interactions were included in the developed procedure. Test calculations were performed with systems in which the dipole moments assume zero values (trans rotamers). Results for the geometrical structure and conformational equilibrium of 1,2-dichloroethane and glyoxal systems in different media are in agreement with available experimental data and previous theoretical studies. © 1997 John Wiley & Sons, Inc.
    Additional Material: 4 Tab.
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  • 88
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    International Journal of Quantum Chemistry 61 (1997), S. 689-697 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A comparison of DFT-LSD-CGA (DZVP/A1 and DZVP2/A2) and restricted Hartree-Fock (RHF) (6-31G and 6-311G**) results on geometries, dipole moments, and electric polarizabilities of a series of molecules incorporating quinoid or phenyl groups in the skeleton is reported. DFT results, obtained with substantially less computational effort, compare favorably with RHF results. © 1997 John Wiley & Sons, Inc.
    Additional Material: 3 Ill.
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  • 89
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    International Journal of Quantum Chemistry 61 (1997), S. 859-863 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations are used to compute the change in the vibrational frequency of CN with an applied electric field aligned parallel to the bond axis. The effect of the field on the CN- vibrational frequency is of the same magnitude as for CN, but in the opposite direction. These results are compared to previous results for CO. © 1997 John Wiley & Sons, Inc.
    Additional Material: 4 Tab.
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  • 90
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    International Journal of Quantum Chemistry 61 (1997), S. 865-879 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A theoretical investigation on the rates of electron-transfer processes Q-I + QII → Q-I + Q-II and Q-I + Q-II → QI + Q2-II was carried out by using the Marcus theory of long-range electron transfer in solution. The molecular reorganizational parameter λ, the free-energy change ΔG0 for the overall reaction, and the electronic matrix element HDA for these two processes were calculated from the INDO-optimized geometries of molecules QI, QII, and histidine. QI and QII are plastoquinones (PQ) which are hydrogen-bonded to a histidine each, and the two histidines may or may not be coordinated to a Fe2+ ion. The plastoquinone representing QI is additionally flanked by two peptide fragments. Each of the species (Pep)2QI · His and His · QII has been considered to be immersed in a dielectric continuum that represents the surrounding molecules and protein folds. INDO calculations confirm the standard reduction potential for the first process (calculated 0.127 V; observed 0.13 V) and predict a midpoint potential of 0.174 V for the second process at 300 K at pH 7 (experimental value remains uncertain but is known to be close to 0.13 V). The plastoquinone fragment carries almost all the net charge (about 95.7%) in [PQ · His]- and the net charge in [PQH · His]-. The electron is transferred effectively from the plastoquinone part of [(Pep)2QI · His]- to the plastoquinone moiety of QII · His in the first step and to the plastoquinone fragment of HisH+ · Q-II in the second step. Therefore, we made use of the formula for the rate of through-space electron transfer from QI to QII (and to Q-II). The plastoquinones are, of course, electronically coupled to histidines, and the transfer is, in reality, through the molecular bridge consisting of histidines and also Fe2+. The through-bridge effect is inherent in our calculation of ΔG0, HDA, and the reorganization parameter λ. We investigated the correlation between half-times for the transfer and (D-1op- D-1s), where Dop and Ds are, respectively, optical and static dielectric constants of the condensed phase in the vicinity of the plastoquinones. We found that with reasonable values of Dop (2.6) and Ds (8.5) the experimental rates are adequately explained in terms of transfers from the plastoquinone moiety of QI to that of QII. The t1/2 values calculated for the two processes are 247 and 472 μs in the absence of Fe2+ and 134 and 181 μs in the presence of Fe2+. These are in good agreement with the observed values which are ≈ 100 and ≈ 200 μs when Fe2+ is present in the matrix and which are known to be almost twice as large when the Fe2+ is evicted from the matrix. The present work also shows that the Marcus-Hush theory of long-range electron transfers can be successfully applied to the investigation of processes occurring in a semirigid condensed phase like the thylakoid membrane region. © 1997 John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
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  • 91
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    International Journal of Quantum Chemistry 61 (1997), S. 943-952 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Correlation-consistent valence basis sets were developed for the third-row main block elements (K, Ca, Ga - Kr) for use with relativistic effective core potentials. These basis sets are somewhat larger than double-zeta in size, with polarization functions, and are balanced for use in both Hartree-Fock and correlation calculations. Spin-orbit splittings for atoms and molecules are calculated and compared to experiment. These calculations use the approximate spin-orbit operator from the relativistic effective core potentials. The use of these results in the calculation of accurate thermochemical data is discussed. © 1997 John Wiley & Sons, Inc. This article is a US Government work and, as such, is in the public domain in the United States of America.
    Additional Material: 5 Tab.
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  • 92
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    International Journal of Quantum Chemistry 62 (1997), S. 185-197 
    ISSN: 0020-7608
    Keywords: alloy clusters ; isomers ; homotops ; isomerization ; meltinglike transition ; surface melting ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Structural and dynamical properties of model 13-atom NinAlm alloy clusters derived from a many-body potential are presented and discussed. Characterization of the structures corresponding to a given stoichiometric composition (i.e., chosen number of Ni and Al atoms) is carried out in terms of isomeric (geometric) forms and different distributions of the two types of atoms between the sites of a chosen isomer. We use the term homotops (“the same topography or geometry”) to label the structural forms that differ only by these distributions. The number and the energy spectra of the homotops are sensitive functions of the stoichiometric composition and isomeric form. Similarly to homogeneous clusters, alloy clusters undergo a solid-to-liquidlike transition as their energy is increased. Individual stages in the transition, such as isomerizations involving only surface atoms, isomerizations involving all atoms, surface melting (in a system as small as 13 atoms), and complete melting are identified and characterized. The actual occurrence of some or all of these stages in the meltinglike transition of a given cluster depends on the character of the energy spectra of its homotops, i.e., ultimately, on its stoichiometric composition. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 62: 185-197, 1997
    Additional Material: 9 Ill.
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  • 93
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    International Journal of Quantum Chemistry 62 (1997), S. 223-235 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: New formulas in the basis of explicitly correlated Gaussian basis functions, derived in a previous article using powerful matrix calculus, are implemented and applied to find variational upper bounds for nonrelativistic ground states of 4He, ∞He, Ps2, 9Be, and ∞Be. Analytic gradients of the energy are included to speed optimization of the exponential variational parameters. Five different nonlinear optimization subroutines (algorithms) are compared: TN, truncated Newton; DUMING, quasi-Newton; DUMIDH, modified Newton; DUMCGG, conjugate gradient; and POWELL, direction set (nongradient). The new analytic gradient formulas are found to significantly accelerate optimizations that require gradients. We found that the truncated Newton algorithm out-performs the other optimizers for the selected test cases. Computer timings and energy bounds are reported. © 1997 John Wiley & Sons, Inc.
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  • 94
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    International Journal of Quantum Chemistry 62 (1997), S. 363-372 
    ISSN: 0020-7608
    Keywords: bioenergetics ; organized collective behavior ; nonlinear kinetic equations ; nonequilibrium thermodynamics ; informational statistical thermodynamics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We consider the emergence of the so-called Fröhlich's effect in a biosystem, a phenomenon consisting of the condensation of excitations in the polar vibrational modes lying at the bottom of these modes' frequency spectrum. This complex behavior of the system, which seems to have relevance in bioenergetics, may arise in open biomaterial, which is governed by nonlinear kinetic equations, and when under the action of a pumping source of metabolic energy. We analyze here in detail the dynamics of (i) the transient stage before the establishment of a steady state and (ii) the relaxation to the original thermodynamic equilibrium state after the pumping source is turned off. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 62: 363-372, 1997
    Additional Material: 6 Ill.
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  • 95
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The radial functions Pi in the nonrelativistic description of the electronic structure of atoms are solutions of eigenvalue equations. These equations are treated as two-point boundary value problems for bound one-electron states and can be solved to high accuracy with finite difference methods. For these numerical techniques the transformation to a suitable new radial variable is essential. The effects and consequences following from an arbitrary suitable variable transformation are studied in the most general way. Important results following from this general analysis are the extension of the range of application of the standard Numerov scheme and the outline for an algorithm of increased overall efficiency and reliability. Especially, the explicit use of transformed solution functions is shown to be unnecessary. Radial functions can be determined for arbitrary effective potentials resulting from the underlying theoretical description. It is demonstrated that all numerical results can be calculated to within a consistent numerical truncation error of order h4 in the grid point spacing. The approach can be extended to handle unbound one-electron states and is applicable in other fields, where differential equations of similar character occur, e.g., in the description of the vibration of a diatomic molecule. A similar analysis for relativistic electronic structure calculations for atoms will be given in Part II. © 1997 John Wiley & Sons, Inc.
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  • 96
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    International Journal of Quantum Chemistry 63 (1997), S. 111-119 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This article investigates a new approach to local approximations to exchange. When a finite basis set is introduced, any operator may be regarded as equivalent to a local operator if its matrix can be reproduced as the matrix of a multiplicative function operator. The expectation values of such operators can be determined from the electron density. Any matrix can be divided into local and nonlocal components, in a way dependent on linear dependencies among basis-set products. A measure of locality is provided by the ratio of the norm of the local component to that of the whole matrix. The local contribution to an expectation value can also be compared with the total. The self-consistent field exchange matrices and their expectation values for atoms Li through Ne and for LiH and HF with several Cartesian Gaussian basis sets were investigated in this way, and for the atoms, the exchange supermatrix was also examined. It has been found in all cases that the matrices and expectation values are more than 92% local; most are more than 99% local. © 1997 John Wiley & Sons, Inc.
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  • 97
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    International Journal of Quantum Chemistry 62 (1997), S. 571-591 
    ISSN: 0020-7608
    Keywords: atomic correlation ; density functional ; scaling ; Hartree-Fock ; excited states ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the introductory section, we compare the total, kinetic, nuclear-electron, Coulomb, exchange, and correlation energies of ground-state atoms. From the analyses of the data, one can conclude that the Hartree-Fock (HF) model is notably good and might require only a small perturbation to become essentially an “accurate” model. For this reason and considering past literature, we present a semiempirical extension of the HF model. We start with a calibration of three independent models, each one with an effective Hamiltonian, which introduces a small perturbation on the kinetic, the nuclear-electron, or the Coulomb HF operators. The perturbations are expressed as very simple functions of products of orbital probability density. The three perturbations yield very equivalent results and the computed ground-state energies are reasonably near to the accurate nonrelativistic energies recently provided by E. Davidson and his collaborators for the 2-18 electron systems and the estimates by Clementi and his collaborators for the 19-54 electron systems. The first ionization potentials from He to Cs, the second ionization potentials from Li to Zn, and excitation energies for npn, 3dn, and 4s13dn configurations are used as additional verification and validation. The above three effective Hamiltonians are then combined in order to redistribute the correlation energy correction in a way which exactly satisfies the virial theorem and maintains the HF energy ratios between kinetic, nuclear-electron, and electron-electron interaction energies; the resulting effective Hamiltonian, named “virial constrained,” yields good quality data comparable to those obtained from the three independent effective operators. Concerning excitation energies, these effective Hamiltonians yield values only in modest agreement with experimental data, even if definitively superior to HF computations. To further improve the computed excitation energies, we applied an empirical scaling in the vector coupling coefficient; this correction yields very reasonable excitations for all the configurations that we have considered. We conclude that the use of effective potentials to introduce small perturbations density-dependent onto the HF model constitutes a broad class of practical and reliable semiempirical solutions to atomic many-electron problems, can provide an alternative to popular proposals from density functional theory, and should prepare the ground for “generalized HF models.” © 1997 John Wiley & Sons, Inc. Int J Quant Chem 62: 571-591, 1997
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  • 98
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    International Journal of Quantum Chemistry 62 (1997), S. 653-658 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The possibility to predict the stability constants of the complexes of magnesium, zinc, cadmium, and lead cations with anions of different carboxylic acids by PM3 calculations was investigated. Linear correlation between calculated complex-formation reaction enthalpies and experimentally measured stability constants were obtained for complexes of each metal, while the overall correlation was not satisfactory. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 62: 653-658, 1997
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  • 99
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    International Journal of Quantum Chemistry 63 (1997), S. 1-2 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 100
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    International Journal of Quantum Chemistry 63 (1997), S. 31-33 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A very simple constructive proof of Löwdin's pairing theorem is presented. © 1997 John Wiley & Sons, Inc.
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