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  • 1995-1999  (634)
  • 1998  (634)
  • Theoretical, Physical and Computational Chemistry  (583)
  • Chemical Engineering
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  • 1995-1999  (634)
Year
  • 101
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 639-648 
    ISSN: 0020-7608
    Keywords: electron correlation ; three-electron integrals ; closed shell ; SCF LCAO MO methods ; correlated wave function ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The correlated electronic wave-function theory developed by S. Obara and K. Hirao [Bull. Chem. Soc. Jpn. 66, 3300 (1993)], as applied to two-electron molecular systems, is generalized to many-center many-electron problems. The exact formulas for effective Hamiltonian operators are given. The rules for the calculation of matrix elements with three-electron operators over Slater determinants are formulated. From the energy-minimum principle, the system of master equations is derived for variational coefficients of a trial wave function for the molecules with closed electronic shells.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 639-648, 1998
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  • 102
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 629-637 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We introduce a new molecular theory beyond the Born-Oppenheimer approximation, where both electrons and nuclei are treated quantum mechanically and equivalently. First, we develop the coupled mean-field theory (CMFT) for both the electronic and nuclear fields. Then, to take into account the dynamic correlation between these particles, we develop a new molecular theory using the generator coordinate method (GCM) based upon the CMFT, which enables us to calculate the molecular eigenstate and eigenvalue directly. Finally, we apply this method to a water molecule and analyze the isotope effect on the vibrational frequency and the particle density.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 629-637, 1998
    Additional Material: 2 Ill.
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  • 103
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 649-657 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: INDO/CI calculations were used to analyze the C1s and O1s shake-up spectra of nickel tetracarbonyl, Ni(CO)4. The satellite structure in both cases is dominated by excitations from metal-ligand bonding (2Πb) to metal-ligand antibonding (2Πa) orbitals and by excitations within the core-ionized CO molecule, ΠCO - Π*CO.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 649-657, 1998
    Additional Material: 8 Ill.
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  • 104
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 619-627 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Three popular approximations to density functional theory are used to calculate equilibrium bond lengths, atomization energies, and vibrational frequencies of 10 rare-gas diatomic molecules. We investigated the results for the local density approximation (LDA), the Perdew-Wang 91 generalized-gradient approximation (GGA-PW91), and the Perdew-Burke-Ernzerhof generalized-gradient approximation (GGA-PBE) functionals. Calculated results are well converged with respect to basis set and numerical precision. In addition, we studied the effects due to long-range 1/r6 attractions with the London formula and density functional determined atomic polarizabilities and ionization potentials. These calculations indicate that the interaction from the overlap of atomic densities and the long-range van der Waals attraction are both important for correctly predicting the total binding energy.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 619-627, 1998
    Additional Material: 11 Ill.
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  • 105
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 659-667 
    ISSN: 0020-7608
    Keywords: conjugated hydrocarbon ; internal rotation ; ab initio method ; geometry ; energy barrier ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential-energy curves of internal rotation were calculated for 1,3-butadiene at the MP2/6-311G** level, for isoprene and 1,3-pentadiene at the MP2/6-311G* level, and for 2,3-dimethyl-1,3-butadiene and styrene at the MP2/6-31G* level. The geometries of the energy minima (stable conformers) and maxima (transition states) on the curves are completely optimized. For butadiene and its methyl derivatives, two stable rotamers, s-trans and gauche conformers, are obtained. s-trans forms have the lowest energies and gauche conformers twisted by 39.9°-48.3° around the central bond of the butadiene skeleton are, on average, 9.8 kJ/mol above the trans forms. s-cis forms are rotational transition states. The computed gauche-cis barriers range from 4.30 to 11.70 kJ/mol. The regular effects of methyl substitutions at the end and central carbons are found. For styrene, the planar form is calculated to be a saddle point which is only about 1 kJ/mol higher in total energy than a twisted minimum, in which the torsional angle between the phenyl and vinyl planes is 27.4°.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 659-667, 1998
    Additional Material: 4 Ill.
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  • 106
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 689-689 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
    Type of Medium: Electronic Resource
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  • 107
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 691-691 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
    Type of Medium: Electronic Resource
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  • 108
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 669-678 
    ISSN: 0020-7608
    Keywords: ab initio calculations ; metal oxides ; oxygen anions ; methane ; surface reactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The stability of oxygen anions and the hydrogen abstraction from methane on a reduced SnO2 (110) crystal surface have been studied theoretically using a point-charge model. The geometric and electronic structures for the present molecules are calculated by means of a hybrid Hartree-Fock/density functional method at the B3LYP/6-311+G(3df, 3pd) level of theory. The calculations of the energies on the point-charge model are performed using these optimized geometries. It is found that a low concentration of the active oxygen species O- and O2- is expected on the reduced SnO2 surface. The activation energies for the abstraction of hydrogen atom from methane on the reduced SnO2 surface are obtained: 12 kcal/mol for O- species and more than 48 kcal/mol for O2- species, indicating that O- species on the surface is the main active center for the dissociation of a C(SINGLE BOND)H bond of methane, which is in agreement with the other oxide catalysts.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 669-678, 1998
    Additional Material: 6 Ill.
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  • 109
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 679-687 
    ISSN: 0020-7608
    Keywords: aromaticity ; hydrogen clusters ; complete basis set ; Gaussian-2 ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Energies for highly symmetric cyclic hydrogen clusters (Hn) with Dnh symmetry were evaluated with Gaussian-2 (G2) and quadratic complete basis set (CBSQ) ab initio approaches. The energies were compared with linear hydrogen clusters as well as with their energies of formation from hydrogen and charged hydrogens. To better estimate aromaticity and eliminate ring strain energy, energies of formation for hydrogen clusters of the same ring size but with different electron numbers were compared. In this way, it was confirmed that the planar hydrogen clusters in singlet electronic configurations follow the Hückel aromatic rule, while aromaticity of the planar hydrogen clusters in an excited state (triplet) follows the Möbius 4n aromatic rule. It was also determined that hexagonal H6 is actually the transition-state structure for hydrogen exchange. The activation barrier for this exchange was estimated to be around 75 kcal/mol.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 679-687, 1998
    Additional Material: 5 Tab.
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  • 110
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 705-711 
    ISSN: 0020-7608
    Keywords: infrared spectrum ; intensity ; frequency ; molecular mechanics ; quantum chemistry ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Infrared spectra simulations require ab initio techniques to get reliable intensities. On the other hand, recent force fields can provide accurate molecular geometries and frequencies. Therefore, it is suggested that these new force fields could be used to simulate infrared spectra, dipole-moment surfaces being described at high levels of theory in order to get satisfactory intensities. As pointed out, for a system with N atoms, the cost of such a simulation would be reduced N-fold with respect to standard quantum approaches. Preliminary calculations based on this scheme are reported here. Encouraging results are obtained since no significant lost of accuracy is noted on going from the ab initio to the molecular mechanics potential energy surface.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 705-711, 1998
    Additional Material: 2 Ill.
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  • 111
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 693-703 
    ISSN: 0020-7608
    Keywords: BCS ; GL ; Hubbard-Stratonovitch ; Nambu ; superconductivity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is intended to derive the Ginzburg-Landau (GL) equation directly from the Bardeen-Cooper-Schrieffer (BCS) Hamiltonian. By the use of the Hubbard-Stratonovitch transformation, the electron-electron interaction composed of four fermion operators is eliminated to yield an auxiliary boson field. This is an effective field in which electrons behave as if they were free. In applying the path integral method, the electron field is integrated out to remain the Lagrangian for this boson field. The symmetry breaking and the phase transition of the system described by this field are discussed, and it is shown that this boson field turns out to be the GL order parameter.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 693-703, 1998
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  • 112
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 713-719 
    ISSN: 0020-7608
    Keywords: correlation energy ; MBPT ; level shift ; dissociation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The effect of replacing the Hartree-Fock one-particle energies with ionization potentials obtained from inverse Dyson equation when calculating electron correlation energies perturbatively is investigated. Though the energy shifts vary from system to system, the slight decrease of the resulting excitation energies at around equilibrium geometries leads to a slight increase of the correlation energies in most cases. In the dissociation limit the inverse Dyson equation opens the gap, thus nondiverging potential curves emerge even at the restricted Hartree-Fock (RHF)+RS2 level.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 713-719, 1998
    Additional Material: 2 Ill.
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  • 113
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 70 (1998), S. 1-1 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 114
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 727-752 
    ISSN: 0020-7608
    Keywords: π electron systems ; quantum statistics ; electronic counting rules ; quantum Monte Carlo simulations ; model Hamiltonians ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic properties of π systems are studied under special consideration of the quantum statistical constraints experienced by a fermionic ensemble. In a many-electron basis of atomic occupation numbers these constraints decompose into a formal on-site constraint and a formal intersite constraint. The on-site constraint can be equated with the Pauli exclusion principle (PEP) while the intersite constraint can be equated with the Pauli antisymmetry principle (PAP). Under special molecular topologies the intersite constraints of fermion ensembles are suppressed. In this case the conventional fermionic statistics coincides with a mixed quantum statistics with fermionic on-site and bosonic intersite properties. Such a mixed statistics is realized in the π subspace of polyenes, (4n+2) Hückel annulenes (n=0, 1, 2,…) and the odd spin space of (2n+1) annulenes (n=1, 2, 3,…) if the π electron hoppings are restricted to nearest-neighbor centers. We discuss the topological conditions to conserve this statistical peculiarity at least approximately in two-dimensional (2D) π topologies. The quantities “aromaticity” and “antiaromaticity,” widely used in the chemical literature, are traced back to quantum statistical, topological, and molecular size considerations. The competition between the quantum constraints PEP and PAP, on the one hand, and the strength of the two-electron interaction in a given π Hamiltonian, on the other, is analyzed on the basis of Pariser-Parr-Pople (PPP), Hubbard (Hu), and simple Hückel molecular orbital (HMO) calculations. The influence of the PAP is reduced with increasing correlation strength while the influence of the PEP does not depend on this coupling parameter. The numerical results have been derived by Green's function quantum Monte Carlo (GF QMC) simulations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 727-752, 1998
    Additional Material: 11 Ill.
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  • 115
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 721-726 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It has been known since the work of March and White that the simplest nonrelativistic density functional theory, namely, the statistical method of Thomas, Fermi, and Dirac, sums subseries of the so-called 1/Z expansion to yield, for heavy neutral atoms, the ground-state energy E= - a0Z7/3+ a1Z2-a2Z5/3+⋅⋅⋅. The term of O(Z5/3) is the Dirac-Slater exchange energy Eexc, and it is of considerable interest to know at what order the correlation energy Ecorr enters this expansion. Dimensional scaling considerations by Kais et al. suggested Ecorr∝Z4/3 in the limit of large Z. Here, attention is focused on whether this can be distinguished empirically from a term of the form (aZ ln Z+bZ) for neutral atoms. If the latter term is correct, then a relationship between Ecorr and the Shannon information entropy can be forged analytically for large atomic number Z in nonrelativistic theory.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 721-726 (1998)
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  • 116
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 69 (1998), S. 753-759 
    ISSN: 0020-7608
    Keywords: HIV-1 protease ; irreversible inhibition ; ab initio ; DFT ; solvent reaction field ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Reaction coordinate for the irreversible inhibition of the HIV-1 protease by epoxy alkylating agent has been examined by ab initio HF/6-31G(d) calculations, semiempirical molecular orbital (MO) calculations, while the effect of polar macromolecular environment was included on the solvent reaction field level. The calculations, show that inhibition is specific: activation (free) energy is low when two carboxylic groups that are models for Asp-25 and Asp-125 in the HIV-1 protease active center are involved and is considerably higher when only one formate or CH3S- is present. The latter two mimick any single carboxylate side chain and cysteine side chain, respectively. Inclusion of solvent reaction field slightly changes the activation free energy. The calculations confirm experimental data concerning the necessity of two-aspartate motif of the protease active center to activate the alkylating agent [Yu et al., J. Am. Chem. Soc. 118, 5856 (1996)]. The results are discussed in the context of design of nonirreversible inhibitors.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 753-759, 1998
    Additional Material: 5 Ill.
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  • 117
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    International Journal of Quantum Chemistry 70 (1998), S. 3-40 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 118
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 70 (1998), S. 41-63 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The two alternative treatments of the BSSE problem of intermolecular interactions - the a posteriori counterpoise (CP) correction scheme of Boys and Bernardi (BB) and the a priori exclusion of the basic-set superposition error (BSSE) by using the “chemical Hamiltonian approach” (CHA) - are discussed. Alternative interpretations of the BB scheme are compared and some problems and paradoxes are described which can consistently be resolved by introducing a hierarchical scheme of N-body CP corrections. In CHA, one identifies those terms of the Hamiltonian (or Fockian) which cause the BSSE - the same terms cause the energy lowering in the “ghost orbitals” calculations; by omitting these terms from the Hamiltonian (Fockian), one can calculate BSSE-free wave functions, by use of which the BSSE-free values of the energy and of other physical quantities can be obtained in a conventional manner. CHA was successfully applied at the SCF and DFT levels of theory, including systems containing three or more interacting subsystems or even infinite periodic chains. The pivot full CI calculations performed for small model systems showed the applicability of the approach for treating electron correlation as well. Most recently, a CHA version of the MP2 theory and a second-order BSSE-free intermolecular PT have also been tested; they are also applicable for complexes of larger size. It was observed, at any level of theory, that the results given by the a posteriori BB and a priori CHA schemes converge to each other much faster than BSSE disappears from the uncorrected results.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 41-63, 1998
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  • 119
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    International Journal of Quantum Chemistry 70 (1998), S. 65-75 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Unitary-group-based perturbation theory for both low and high spin open-shell systems is employed to obtain perturbative corrections for the contribution of the connected triexcited clusters as well as of pseudo-doubles (three-body doubles), within the framework of the unitary-group-based coupled-cluster method with interacting singles and doubles [UGA-CCSD(is)]. A set of triple excitation operators, generating orthonormal triply excited configurations, which can be employed in both noniterative and iterative coupled-cluster calculations involving connected triexcited clusters, is constructed and various schemes for perturbative triple corrections are introduced.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 65-75, 1998
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  • 120
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    International Journal of Quantum Chemistry 70 (1998), S. 89-93 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this work, a general method of calculating multicenter integrals over Slater-type functions is presented and numerical calculations on diatomic molecules, H2 and N2, are carried out. Our results are then compared with those obtained with Gaussian-type functions. The method, which is essentially an addition theorem for Slater-type functions, is outlined and some of its mathematical and numerical properties are presented. As regards our numerical results, although such very small diatomics are of limited interest in chemistry, they are to be considered as the necessary step that will allow us to tune up the computational machinery. Furthermore, the conclusions drawn throughout this work will be used for more general algorithms which will allow us to treat efficiently more complicated systems, namely, three, four, and many more atomic systems.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 89-93, 1998
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  • 121
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    International Journal of Quantum Chemistry 70 (1998), S. 77-87 
    ISSN: 0020-7608
    Keywords: linear molecular aggregate ; coupled Liouville equation ; hyperpolarizability ; optical retarded field ; optical bistability ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We develop a numerical calculation scheme of a dynamics of the quantum network for linear molecular aggregates under time-dependent electric fields. Each molecule is assumed to be an electric dipole arranged linearly with an arbitrary angle from the longitudinal axis. This approximation is considered to be appropriate for the aggregates with large intermolecular distances and allows us to treat intermediate- and large-size aggregates without enormous direct calculations of the Coulomb interactions. The molecular interactions are taken into account by adding the radiations from these dipoles to the external electric fields. The dynamics is performed by solving the coupled Liouville equation constructed from the Liouville equation for each dipole. The effects of the retarded electric fields are evaluated with numerically exact precision by using the sixth-order Runge-Kutta scheme. As a simple example, we examine the linear aggregates involving two dipoles composed of two-state molecules under the continuous laser fields. The effects of the intensity of external fields, the intermolecular distances, and the angles between the dipole and the longitudinal axis on the population differences are investigated. The linear polarizability spectra are calculated by using the definition of nonperturbative polarizability. An abrupt change like the phase-transition behavior in the variation in the population differences for the applied field intensities is observed for the dimer models. Based on these results, we anticipate the population differences for larger (intermediate)-size aggregates.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 77-87, 1998
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  • 122
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    International Journal of Quantum Chemistry 70 (1998), S. 95-103 
    ISSN: 0020-7608
    Keywords: transition-state optimization ; free energy surface ; intrinsic reaction coordinate ; solution chemical reaction ergodography ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To obtain a transition state (TS) in solution chemical reaction, a new TS optimization method has been proposed on a multidimensional free energy surface (FES). Analogous to the method for the Born-Oppenheimer potential energy surface using ab initio molecular orbital calculation, the present method utilizes force and Hessian on the FES, which can be calculated by molecular dynamics method and the free energy perturbation theory. Furthermore, on the basis of the method, we have proposed the definition of the intrinsic reaction coordinate (IRC) on the FES. According to not only the estimation of the computational demand but also the comparison of the numerical accuracy, we conclude that our method should be more efficient than such other methods that utilize only the free energy. Finally, it is discussed that the TS optimization and the IRC on the FES should become very important tools to develop a new research field called the solution chemical reaction ergodography.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 95-103, 1998
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  • 123
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    International Journal of Quantum Chemistry 70 (1998), S. 105-112 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the present work, a theoretical analysis was carried out on the effect of the proximity of a polar bond to a polarizable bond on the magnetic shielding constants of the nuclei belonging to the polarizable bond. In particular, the case of 13C magnetic shielding constants in a vinylic C=C bond is considered. The electric field of the polar bond is simulated by two opposite point charges proximate to the C=C bond in (I) C2H4 and (II) (OH)HC2H2. Changes in the 13C magnetic shieldings as well as the polarization of the π C=C bond are evaluated as a function of the magnitudes of such point charges. The shielding effect on the C nucleus proximate to the positive charge is of the same order of magnitude as that experimentally determined in aryl methyl ethers. The present analysis yields theoretical support to the assumption that changes in magnetic shielding constants can be adequate probes to detect the stabilization effect in a molecular system originating in an electrostatic interaction between a polar bond proximate to a polarizable bond.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 105-112, 1998
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  • 124
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    International Journal of Quantum Chemistry 70 (1998), S. 113-123 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Calculations of topological properties of the Laplacian of the electronic density function [-∇2ρ(r)] evaluated with a parametrical (CNDO) and full-electron ab initio HF methods were performed. Results for CH4, CH3Cl, CCl4, H2S, and PH3 molecules show that the use of the symmetrical transformation to the basis set is adequate to build the CNDO electronic density functions that reproduce, in a qualitative way, the topology of -∇2ρ(r) obtained from full-electron ab initio calculations. The topology of -∇2ρspin(r) was evaluated using CNDO calculations. An analysis of the critical points was carried out on modeled catalysts (Ni5 and Mo3S14H4 clusters) to study the adsorption of C on Ni5 and dissociation of H2 on Mo3S14H4. The location of critical points was associated with the most reactive sites on the cluster surface and used to predict the C adsorption path and the most convenient orientation of H2 for dissociation.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 113-123, 1998
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  • 125
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    International Journal of Quantum Chemistry 70 (1998), S. 125-131 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In highly extended (mesoscopic) molecular networks or solid-state systems, one-electron states with an extremely complex (multifractal) internal structure commonly appear at intermediate length scales. It is shown that multifractality is not compatible with the concept of electron density. Physical intuition suggests that electron densities should be smooth both at atomic distances and close to the macroscopic limit. Special care must be taken, however, in studying density-based energy functionals at intermediate length scales due to the nonexistence of the density itself. In this contribution, the extension and practical calculation of some energy functionals for multifractal structures are discussed and statistical (scaling) properties are studied as well.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 125-131, 1998
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  • 126
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    International Journal of Quantum Chemistry 70 (1998), S. 159-165 
    ISSN: 0020-7608
    Keywords: object-oriented programming ; Java ; World Wide Web ; quantum chemistry software ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Java programming language is an architecture-independent, object-oriented language, designed for secure local and network applications. Programs written in Java can either be embedded within hypertext documents on the World Wide Web (so-called applets), or be fully stand-alone, as software written in other programming languages. In this article, we present two sample quantum chemistry applications written in Java. The first is an educational applet, illustrating an LCAO-SCF calculation of the ground state of the helium atom using a double-zeta basis set. The second is a prototype one- and two-electron integral package for Gaussian-type atomic orbitals. The potential for Java applications to play an educational role and for the construction of object-oriented libraries of basic functionality for quantum chemical software is discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 159-165, 1998
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  • 127
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    International Journal of Quantum Chemistry 70 (1998), S. 147-157 
    ISSN: 0020-7608
    Keywords: dynamic correlation effects ; perturbation theory ; MBPT ; multireference perturbation theory ; scaling theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present an analytical estimate of the intrinsic errors of second-order perturbation theory in the complete basis set limit in the framework a scaling theory, which employs the maximal “sharpness” of the orbitals in a given basis set, quantified by the average momentum, as its fundamental variable. We find that the intrinsic errors of second-order perturbation theory fall with the third inverse power of the maximal momentum representable in the basis set, while the basis set truncation errors fall with the second inverse power of the momentum. These analytical arguments are verified in a numerical investigation employing distributed basis sets of up to 600 orbitals for the helium atom, water, and ethene. Extending our analysis to generic multireference perturbation theory (MRPT) we find that the leading contribution for the relaxation of the orthogonal complement of the zero-order wave function in the primary space scales with the same power as the leading overall perturbative correction, which yields an analytical argument for the perturbation inclusion of such feedback effects in the formulation of efficient versions of MRPT.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 147-157, 1998
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  • 128
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    Keywords: molecular dynamics ; formamidine ; proton transfer ; heat capacity ; energy transfer ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To explore the energy flow-mechanism of a solution-chemical reaction on the basis of an energy-fluctuation analysis and the time evolution of various kinds of energies [J. Phys. Chem. 48, 12506 (1994)], a chemical reaction molecular dynamics simulation was carried out in the microcanonical ensemble for the proton-transfer reaction of formamidine in an aqueous solution. The energy ΔE required to surmount the reaction barrier was found to be supplied mainly from the potential energy of the solvent water rather than from the solvent kinetic energy. The ratio of the reactive energy flow from the solvent potential vs. the kinetic energy, ΔV/ΔK, was 2.34 and was found to be in good agreement with the value of 1.96 predicted from the classical constant-volume heat capacity of water, CVB, via the Lebowitz-Percus-Verlet relation [Phys. Rev. 153, 250 (1967)]. This finding confirmed the results of Wilson et al. [J. Am. Chem. Soc. 113, 74 (1991)]; namely, that the ratio should be determined only by the heat capacity of the solvent with no relation to the kinds of solute molecules, and in aqueous solution, the coordinate fluctuation plays a more important role in the reaction occurrence than in the momentum fluctuation. Furthermore, on the assumption that the solute internal distribution is assumed to accomplish instantaneously thermal equilibrium with the surrounding solvent and to be characterized as an instantaneous canonical ensemble, the instantaneous partial molar constant-volume heat capacity of solutes, CVS(t), is defined at first by a simple extension of the relationship between the equilibrium heat capacity CVS and the ratio of the kinetic- and potential-energy fluctuations of the solutes. On the average, CVS(t) has a larger value than that evaluated within the harmonic approximation in the gas phase, i.e., 199.5 J K-1mol-1. The incompatibility was brought about by the intervention of the solute-solvent interaction. In addition, an exceptionally large value of CVS(t) was observed just 0.06 ps after (or before) the barrier crossing time and can be explained by the smaller fluctuation in the instantaneous kinetic energy. It was also observed that, during the relaxing (or surmounting) process of the reaction, CVS(t) becomes relatively larger than those in the transition and equilibrium periods, originating from the simple fact that the relatively larger potential fluctuation makes it easier to dissipate (or supply) the reactive energy from (or to) the reactants, as translated by a larger CVS(t).   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 133-145, 1998
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  • 129
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    International Journal of Quantum Chemistry 70 (1998), S. 167-180 
    ISSN: 0020-7608
    Keywords: localized orbitals ; periodic structures ; perturbation theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Localized molecular Hartree-Fock orbitals have been determined by means of an iterative procedure consisting of orthogonalization and configuration interaction employing single excitations. For ring systems the rotational symmetry has been included explicitly to obtain Wannier-like orbitals suited for a posteriori correlation calculations using only the most important contributions within a limited region around one reference ring segment. Applications involving different estimates of the correlation energy include as model systems (H2)2n+1, the ionic LinHn, and a weakly bound beryllium ring as well as the strongly covalent molecule (CH2)36 forming a closed ring. In all cases, the localized and canonical MP2 results are close, and the localized Epstein-Nesbet second-order gives a good estimate of more expensive MP4 or CEPA-0 values.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 167-180, 1998
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  • 130
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    International Journal of Quantum Chemistry 70 (1998), S. 189-197 
    ISSN: 0020-7608
    Keywords: atomic Hartree-Fock ; augmented Fourier basis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a scheme for Hartree-Fock and related calculations on atoms using a Fourier basis augmented by an exponential function. All multiple sums in the variational energy expression are written as single sums over combinations of multiplications and convolutions. The computational cost of the method is thus practically linear in the number of basis functions. The results compare favorably with the most precise published results of numerical grid methods and variational calculations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 189-197, 1998
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  • 131
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    International Journal of Quantum Chemistry 70 (1998), S. 181-188 
    ISSN: 0020-7608
    Keywords: nuclear attraction integral ; nonlinear D transformations ; rapid evaluation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Density functional theory requires precise numerical values for three-center nuclear attraction integrals, best obtained over Slater-type orbitals (STOs). Efficient evaluation of three-center nuclear attraction integrals over STOs to predetermined accuracy is made possible by applying the nonlinear D and D transformations. These methods are implemented in Fortran subroutines. This work shows how the conditions of applicability for these transformations are readily proven to be satisfied using the Axiom symbolic computation system. Axiom also provides exact values of the integrals for comparison. Their evaluation by standard numerical quadrature methods (Gauss-Laguerre), proves inadequate: Certain parameters lead to inaccurate values for the integrals, whereas the transformed integrals are highly accurate and rapidly evaluated.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 181-188, 1998
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  • 132
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    International Journal of Quantum Chemistry 70 (1998), S. 199-203 
    ISSN: 0020-7608
    Keywords: alignment ; intense fields, dressed molecular states ; Floquet theory ; hydrogen molecule ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential energy surface resulting from the application of the high-frequency Floquet theory to the hydrogen molecule coupled to a linearly polarized field is determined. The method uses a standard quantum chemistry program. It is found that the anisotropy of the surface is more pronounced than in the case of the hydrogen molecular cation. This is indicative of a strong propensity for an alignment of the internuclear axis in the direction of the applied field.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 199-203, 1998
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  • 133
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    International Journal of Quantum Chemistry 70 (1998), S. 205-217 
    ISSN: 0020-7608
    Keywords: potential energy surface ; transition structure ; nonrigid molecule ; symmetry group ; reaction path ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The symmetry group of a nonrigid molecule is related to that of the transition structure that is related to the rearrangement process which contributes to the “nonrigidity” of the molecular system. The resulting permutation/rotation/reflection groups for nonrigid molecules can be much larger in order than the usual Longuet-Higgins permutation/inversion group. A few examples are presented to illustrate the definition of the symmetry group for nonrigid molecules.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 205-217, 1998
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  • 134
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    International Journal of Quantum Chemistry 70 (1998), S. 219-239 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We review some recent developments of high-order response theory and illustrate the utility of this theory for a selection of nonlinear properties.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 219-239, 1998
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  • 135
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    International Journal of Quantum Chemistry 70 (1998), S. 241-252 
    ISSN: 0020-7608
    Keywords: hydrogen bonding ; liquid structure ; amide compounds ; low-wave-number vibrational spectra ; intensities ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Relationship between intermolecular hydrogen bonding and features in the low-wave-number infrared (IR) and Raman spectra of liquid formamide (FA), N-methylformamide (NMF), and N-methylacetamide (NMA) is studied by performing ab initio molecular orbital calculations on clusters of these molecules. Strongly Raman-active modes are calculated at ∼200 and ∼100 cm-1 for the FA hexamer consisting of two antiparallel linear trimers, but only at ∼100 cm-1 for the NMF linear tetramer and the NMA linear trimer. These calculated results are consistent with spectral features observed in the liquid state. The IR spectra calculated for these cluster species are also in agreement with experimental results. By contrast, no strongly Raman-active mode is calculated for the FA linear hexamer in the 250-150 cm-1 region. The strong Raman band of liquid FA observed at ∼200 cm-1 is therefore characteristic of two-dimensional hydrogen bonding. The origin of the spectral features is examined by calculating the IR and Raman intensities arising from translations, rotations, and methyl torsion(s) of each molecule. It is clarified that the Raman intensities in the low-wave-number region mainly originate from rotational motions in the out-of-plane direction and is explained by anisotropy of the polarizability tensor of each molecule. The IR intensities in the low-wave-number region mainly arise from rotations of the permanent dipole moment of each molecule, but other factors also have some contributions.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 241-252, 1998
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  • 136
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    International Journal of Quantum Chemistry 70 (1998), S. 269-282 
    ISSN: 0020-7608
    Keywords: hyperpolarizability ; hydrogen chain ; bond alternation ; ab initio ; electron correlation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations of the second hyperpolarizabilities (γ) for one-dimensional hydrogen chains (Hn) with different bond-length alternations and charges are performed. We investigate their signs, magnitudes, and chain-length dependences at various electron correlation levels using an extended basis set. Remarkable differences in the γ are observed for different bond-length alternations and for different charged states. In order to elucidate the differences in γ, spatial contributions of electrons to the γ are analyzed for these short and long Hn chains by using the second hyperpolarizability density plots. The effects of the introduction of charged defects into the linear chains on the γ are also investigated by varying the intercharged defects distance.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 269-282, 1998
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  • 137
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    International Journal of Quantum Chemistry 70 (1998), S. 253-267 
    ISSN: 0020-7608
    Keywords: DFT ; carbonyloxyl radicals ; CASPT2 ; chemical reactions ; isomerizations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The structure of the lowest electronic states of HCOO· in C2v and Cs symmetries were optimized employing density functional theory (DFT) methods with extended basis sets including up to f- (on C and O) and d- (on H) polarization functions. Generalized gradient functionals (BLYP) and adiabatically connected functionals (B3LYP and B3PW91) were employed for studying HCOO·, as well as the isomer HOCO· (trans), the dissociation limit H·+CO2, and the transition state for the decomposition. At the best DFT levels employed, the ground state of HCOO· is 2A1 (in C2v) with equal C—O bond lengths, while the low-lying 2B2 state is only about 4 kJ/mol above (without inclusion of zero-point energies). The broken-symmetry 2A′ state (with unequal C—O bond lengths, i.e., Cs symmetry) is predicted to be about 13 kJ/mol above the 2A1 state and to be a transition state for the isomerization HCOO· (2A1)→HOCO· (2A′), with the trans-HOCO· isomer about 55 kJ/mol more stable. These facts agree closely with the most recent CASPT2/ANO calculations on this system. Therefore, it is concluded that some DFT models can be used safely for the study of larger radicals of the same type (despite several drawbacks discussed at length in this study). B3PW91, using several basis sets, is subsequently applied to the study of the possible reaction mechanisms of acetyloxyl radical, which exhibits a much more complicated path than formyloxyl, due to the presence of the methyl group. The optimum structures of isomers with coplanar or perpendicular CH and CO bonds were obtained for CH3COO· and two saddle points identified on the path of decomposition into CH3· and CO2. On the other side, saddle points for isomerization into CH3OCO· and CH2COOH· were also located, and the decomposition of the former to CH3O·+CO investigated. Finally, the structure of the benzoyloxyl radical (C6H5COO·) and its possible decomposition products were investigated along the same lines.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 253-267, 1998
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  • 138
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    International Journal of Quantum Chemistry 70 (1998), S. 283-290 
    ISSN: 0020-7608
    Keywords: LiB ; spectroscopic constants ; excited states ; VBSCF ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The common correspondence between molecular orbital theory and resonance theory in the description of the electronic structure of a molecule is used to select valence bond (VB) structures constructing wave functions of the low-lying states of LiB and LiB+. The spectroscopic parameters of the low-lying states of LiB and LiB are determined by using the valence bond self-consistent field (VBSCF) method. For comparison, multconfiguration SCF (MCSCF) calculations for LiB are also carried out. If the overlap-enhanced orbitals are employed, a compact VB wave function can correctly describe bond making and bond breaking in the entire dissociation process for the low-lying electronic states of LiB. All calculations locate the ground state as 3Π. The VB calculation with 14 VB structures at the level of the basis set DH(s, p) predicts an excellent dissociation energy of 1.16 eV and vibrational frequency of 527 cm-1 for the ground state, which is in good agreement with previous high-level calculations with a large basis set. The effect of the basis set on the numerical quality of the VBSCF calculation is investigated. It is important for improving accuracy of the VB calculation to enlarge the basis set, although the VB treatment including more VB structures with a relatively small basis set needed in the nonorthogonal VB calculation can reasonably describe dissociation behavior for systems with few electrons. The chemical bonds in the ground state 3Π and the excited state (1)3Σ- have ionicities of 63.4 and 65.1%, respectively, while chemical bond in the first excited state 1Σ+ is mainly covalent. Other several low-lying states are also investigated by the VB and MCSCF methods.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 283-290, 1998
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  • 139
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    International Journal of Quantum Chemistry 70 (1998), S. 291-302 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The addition of singlet carbene analogs XR2 (X=C, Si, Ge, and Sn; R=H and F) into ethylene have been investigated by ab initio molecular orbital methods. The reaction mechanisms are two-step processes. The first step is the complex formation, the C—X bond formation of one site, with the interaction between the empty pπ orbital of carbene analogs and the π orbital of ethylene, and the second is the other C—X bond formation with biradical coupling (addition). The transition states correspond to the intermediate process between the first and the second steps. The localized molecular orbital (LMO) configuration analysis along the intrinsic reaction coordinate (IRC) path showed important singlet excitation character for the transition state. An increase in the energy barrier heights for the above systems is associated with a general increase in the singlet excitation energies of carbene analogs XR2. On the basis of the proposed reaction mechanism, the heats of formation for the treated reaction systems were estimated.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 291-302, 1998
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  • 140
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    International Journal of Quantum Chemistry 70 (1998), S. 313-320 
    ISSN: 0020-7608
    Keywords: ab initio calculations ; equilibrium structure ; chemical shifts ; nuclear spin-spin coupling constants ; μ-hydrido-bridging ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Full conformational analysis on the cyclodecyl cation was performed at the HF/6-31G** level of theory. The most stable conformer is established as having a boat-chair structure with a 1,5-transannular interaction and a symmetrical and bent μ-hydrido bridge, which involves a two-electron three-center bond. Similar boat-chair conformations are preferred by the homologous cyclooctyl and cyclononyl cations. For the related diaza- and diboracyclodecyl ions, the 1,6-transannular interaction in a cis-decalin-type geometry is more favorable than is the competing 1,5-process. These structural models are fully consistent with the main features observed in the NMR spectra. In particular, the unusual patterns of the chemical shifts and nuclear spin-spin coupling constants in the bridging backbones Ht—X(DOTTED BOND)Hμ(DOTTED BOND)X—Ht are also satisfactorily reproduced by the ab initio results obtained with the continuous-set-of-gauge-transformations and equations-of-motion methods, respectively.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 313-320, 1998
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  • 141
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    International Journal of Quantum Chemistry 70 (1998), S. 303-312 
    ISSN: 0020-7608
    Keywords: bithiophene ; internal rotation ; DFT calculations ; MP2 calculations ; Fourier-fitted torsional potentials ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The internal rotation of 2,2′-bithiophene was investigated within the density functional theory (DFT) approach. Fully optimized DFT torsional potentials are compared with Møller-Plesset (MP2) results which predict a fourfold potential with s-cis- and s-trans-gauche minima. DFT calculations fail in describing the energetics of the internal rotation because they favor planar vs. perpendicular conformers. Gradient-corrected functionals provide torsional potentials where the gauche minima have almost vanished and the s-cis↔s-trans interconversion barriers are twice as high as the barriers obtained at the MP2 level. The use of local functionals augments the shortcomings of the DFT approach. The gauche minima completely disappear and the rotational barriers are now about three times higher than the MP2 barriers. As an efficient computational approach, we suggest having geometries optimized at the DFT level and conformational energies evaluated via single-point MP2 calculations. The fitting of MP2//DFT energies to truncated Fourier expansions allows one to predict the torsional angles and the relative energies of the critical points of the rotational potential with an accuracy similar to that afforded by MP2 calculations including full geometry optimization.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 303-312, 1998
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  • 142
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    International Journal of Quantum Chemistry 70 (1998), S. 321-329 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The geometries of the reactant, products, and transition state of the title reaction were optimized at the UHF and UMP2 levels with the double and triple zeta basis sets as well as polarization functions by using the energy-gradient method. The potential-energy barrier for this reaction is 3.73 kcal/mol at the UMP-SAC4 level of theory. The intrinsic reaction coordinate (IRC) was performed at the UMP2/6-311G** level. The changes of the geometry and the bound vibrational modes along the IRC were analyzed. To obtain a more reliable potential-energy curve for the study of the reaction dynamics, the UMP2 energy profile was refined along the IRC with the UQCISD(T) and UMP-SAC4 levels of theory. The theoretical rate constants calculated by the conventional and the variational transition-state theories at the UMP-SAC4 level agree approximately with the experimental values in the high-temperature range from 2000 to 3000 K and are not affected by the variation and quantum effects.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 321-329, 1997
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  • 143
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    International Journal of Quantum Chemistry 70 (1998), S. 331-339 
    ISSN: 0020-7608
    Keywords: intensity theory ; vibrational spectroscopy ; ab initio calculations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The development of effective theoretical approaches for analytic evaluation of first, second, and third derivatives of molecular properties, in particular energy, dipole moment, and polarizability, has contributed to increased accuracy of ab initio methods in predicting vibrational spectral parameters. It has become possible to devise and test theoretical approaches for analysis of vibrational intensities using consistent and reliable results from high-level ab initio calculations. There is a second important side of the application of ab initio molecular orbital (MO) calculations to the study of vibrational intensities. As for many other physical and chemical phenomena, the quantum mechanical studies provide essential information about the fine mechanisms and factors determining the observed physical quantities, in our case the intensities in infrared and Raman spectra of molecules. On this basis, new theoretical formulations for infrared and Raman intensities were recently developed. Infrared intensities are transformed into quantities termed effective bond charges that are derived from dipole moment derivatives with respect to atomic Cartesian coordinates. Raman intensities are reduced to effective induced bond charges following an analogous approach. In the present work we review the relation between advances in analytic derivative ab initio quantum mechanical calculations and the development of methods for analysis and interpretation of experimental or ab initio dipole and polarizability derivatives. Brief presentation of the effective bond charge and effective induced bond charge formulations is given.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 331-339, 1998
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  • 144
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    International Journal of Quantum Chemistry 70 (1998), S. 341-350 
    ISSN: 0020-7608
    Keywords: alumina ; periodic SCF ; surface potential ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of the (001) and (110) α-alumina surfaces was determined by periodic Hartree-Fock method in statically relaxed geometries. Both (001) and (110) surfaces generate specific surface states into the energy gap. Significant influence of charge-transfer effect on the surface-adsorbate potential is possible in both cases studied. The inclusion of the exponential part to the standard potential forms was suggested for the description of the interaction potential in such cases.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 341-350, 1998
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  • 145
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    International Journal of Quantum Chemistry 70 (1998), S. 351-357 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The activation of the (110) TiO2 rutile surface by deposition of alkali metal atoms has been the subject of some recent experimental studies. These results indicate a reduction of the surface when sodium atoms are deposited on it. In the present work, this process has been studied by means of ab initio embedded cluster calculations combined with molecular dynamics simulations. Several surface sites have been considered and our calculations show that reduction occurs selectively on fivefold coordinated titanium atoms. Geometry optimization of a representative Na-surface clusters leads to a structure in which the Na atom is symmetrically coordinated to three oxygen atoms (two protruded and one basal) in excellent agreement with models proposed from experimental data. A mechanism for the adsorption process in which a long-distance electron transfer from atomic Na toward a fivefold coordinated surface titanium atom followed by physisorption of the Na+ cation on the surface is proposed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 351-357, 1998
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  • 146
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    International Journal of Quantum Chemistry 70 (1998), S. 359-365 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A theoretical analysis of γ-Al2O3 (110) surface hydroxylation based on ab initio Hartree-Fock embedded cluster calculations was carried out. Both tetrahedral and octahedral Al sites were considered. These sites were modeled by a series of clusters of increasing size: Al8O3, Al12O5, and Al16O8, embedded in an array of point charges. The adsorption of water was found to be dissociative or nondissociative depending on the cluster size, although the mechanism clearly converges toward dissociation for the more reliable models in agreement with the experiment. This dependence can be explained in light of the basicity modification of surface oxide ions induced by the environment as well as by surface relaxation. Comparison of chemisorption energies suggests that the preferred site for hydroxylation is a low coordination tetrahedral aluminum.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 359-365, 1998
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  • 147
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    International Journal of Quantum Chemistry 70 (1998), S. 375-378 
    ISSN: 0020-7608
    Keywords: electronic structure ; catalytic properties ; Wangh-type anion ; heteropoly compounds ; DV-Xα method ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of Waugh anion (NiMo9O32)6- has been calculated by the DV-Xα method. The electronic structure and catalytic behavior of the Waugh anion are discussed. At the same time, the difference in electronic structure and relationship in catalytic behavior between Waugh and Keggin anions are compared.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 375-378, 1998
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  • 148
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    International Journal of Quantum Chemistry 70 (1998), S. 367-374 
    ISSN: 0020-7608
    Keywords: adsorption ; ZnO ; semiempirical ; AM1 ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ZnO surfaces have important catalytic activities. The H2/CO/CO2 mixture plays an important role in the synthesis of methanol. However, CO2 interaction is known to inhibit the CO interaction for methanol synthesis, protecting the surface against complete reduction or formate formation, but may also be used to promote the methanol synthesis on the Cu/ZnO catalyst. The NH3 adsorption is important to connect the surface acidic activity. The CO interaction is complex, and the NH3 interaction could help to understand the CO adsorption, since the Lewis basis NH3 is known to adsorb physically and chemically on the ZnO surfaces bonding nitrogen to the unsaturated zinc cation. The semi-empirical AM1 method, as well as the (ZnO)22 and (ZnO)60 large cluster models were used to study the interaction of CO2 and NH3 molecules with ZnO surfaces. The adsorbed molecules were fully optimized. We have found three different configurations for the CO2 interaction. The binding energy calculated for the CO2 adsorption is greater than the calculated value for the CO and NH3 interaction using the AM1 method. The C—O bond length increases upon adsorption. The NH3 molecule adsorbs dissociatively on ZnO surfaces, forming the amide and hydroxyl species. The charge-transfer process, density of states, and self-consistent field orbital energies are also investigated.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 367-374, 1998
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  • 149
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    International Journal of Quantum Chemistry 70 (1998), S. 379-385 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The diffusion process of a hydrogen atom on the amorphous water ice surface was investigated under very low temperature conditions (10 and 70 K) using both classical and quantum approaches. The model amorphous water ice slab was prepared by the classical molecular dynamics (MD) simulation under the two-dimensional periodic boundary condition with 1000 water molecules in a unit cell. For a H atom thrown onto the surface of the amorphous ice, the sticking and diffusion processes were studied. In the sticking case, the incident H atom initially diffused for 1-3 ps and then became trapped in one of the stable sites on the amorphous ice surface. To estimate the quantum mechanical diffusion constant, a new formalism was developed using the differential diffusion constant. A rate calculation for a H atom diffusing from one trapped site to another on the amorphous water ice was performed. The numerical value was compared with the hopping rate constant for the classical thermal diffusion, and a large quantum effect was found.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 379-385, 1998
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  • 150
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    International Journal of Quantum Chemistry 70 (1998), S. 387-394 
    ISSN: 0020-7608
    Keywords: iron-porphyrin ; density functional calculations ; oxyheme ; heme models ; Car-Parrinello molecular dynamics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Equilibrium structures of iron-porphyrin (FeP) and its O2 complex, computed with Car-Parrinello molecular dynamics, are in excellent agreement with experimental data on synthetic heme models. Geometry optimization can affect significantly the relative energies among spin states of these systems. The Fe—O bond, best described as FeIII—O2-, increases its strength from 9 to 15 kcal/mol upon binding an imidazole axial ligand (Im). Our results are consistent with an open-shell singlet as the ground state of FeP(Im)(O2), in competition with a low-lying closed-shell singlet state and, as the FeOO angle increases, with a triplet state. The conformation in which the imidazole plane and the O—O axis projection lie in the same N—Fe=N porphyrin quadrant is found to be stable, although easy rotation of the O2 molecule around the Fe—O axis at room temperature is predicted. Comparison of the performance between the local spin density approximation (LSD) and the gradient-corrected scheme (LSD+GC) is provided.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 387-394, 1998
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  • 151
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    International Journal of Quantum Chemistry 70 (1998), S. 407-413 
    ISSN: 0020-7608
    Keywords: molecular dynamics ; hydrogen bonding ; conformational studies ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Thiamin diphosphate (ThDP) is an essential cofactor for a number of enzymes, especially of pyruvate decarboxylase (PDC) which catalyzes the decarboxylation of α-keto acids. Recently, the crystal structure of PDC-bound ThDP has been determined. Based on these X-ray data molecular dynamics (MD) simulations of the isolated coenzyme as well as of ThDP in its enzymatic environment were performed, using the GROMOS87 software package. In the ThDP-apoenzyme model all significant amino acid residues with a cut-off radius less than 8.5 Å from the cofactor were considered. The conformational behavior and the formation of specific structures of both ThDP and enzyme-bound ThDP were investigated in order to get hints on the activity and the mechanism of the coenzyme. Therefore, trajectories of significant structural parameters were analyzed by our graphics tool. Moreover, Ramachandran-like plots with respect to significant torsion angles were used for the illustration. Finally, MD simulations on ThDP analogs with less or none catalytic activity and apoenzyme mutants were included, in order to study the cofactor-apoenzyme binding.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 407-413, 1998
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  • 152
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A detailed study of the type and extent of electronic reorganization created by macroscopic solvation of a prototypical carbonyl solute is carried out within the framework of the semiempirical multiconfiguration self-consistent reaction-field model. The solvation causes additional polarization of the electronic charge density within the carbonyl group. Orbitalwise breakup of the electron densities on the key atoms throws light on such features as the polarity dependence of inversion barriers and out-of-plane bending. Macroscopic solvation is shown to cause a reverse π-polarization within the carbonyl group, affecting barrier heights on the inversion path.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 415-428, 1998
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  • 153
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    International Journal of Quantum Chemistry 70 (1998), S. 395-405 
    ISSN: 0020-7608
    Keywords: intramolecular H bonds ; gas-phase stability ; continuum solvent ; solvation free energy ; point charge model ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational properties of bilirubin present a considerable interest from the medical and biological points of view, because of the toxic pigment peculiar solubility features. Therefore, ab initio geometry optimizations at the 3-21G/SCF level were carried out on a few model-built structures of bilirubin, after substituting the methyl groups on the heteroaromatic rings with H atoms. The structures obtained show a varied network of H bonds, ranging from 0 to 6 H bonds for the lowest-energy conformer in vacuo. This conformer assumes a “ridge-tile” shape previously found in both MM/MD simulations [D. A. Lightner et al., J. Am. Chem. Soc. 114, 10123 (1992)] and semiempirical calculations [W. H. Shelver et al., Int. J. Quantum Chem. 44, 141 (1992)], but at the ab initio level, its computed H-bond geometrical parameters are fairly consistent with the X-ray observed ones. The relative stability of all the structures is compared in vacuo and in aqueous solution using the polarizable continuum model (PCM) of the solvent, whose stabilizing effect, however, is not sufficient to fill the large energy gap between the less lipophilic conformers and the most stable one in vacuo, in agreement with previous CD measurements. The energetic cost imposed to the solvent effect by each intramolecular H bond is almost constant if the other structural features do not change appreciably. The trend of the purely electrostatic results obtained employing a partial charge model of bilirubin is analogous to that produced by its polarized ab initio charge distribution.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 395-405, 1998
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  • 154
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    International Journal of Quantum Chemistry 70 (1998), S. 429-440 
    ISSN: 0020-7608
    Keywords: symmetric group ; class-sums ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An algorithm for the evaluation of products of arbitrary conjugacy class-sums in the symmetric group is conjectured. This algorithm generalizes a procedure presented sometime ago, which deals with products in which at least one of the class-sums involved consists of a single cycle (and an appropriate number of fixed points). Let the support size of a conjugacy class be the number of indices that are not fixed points. The algorithm proposed implies that the coefficient of the class-sum C in the product of the class-sums A and B is given in terms of a well-defined enumeration problem within the symmetric group Sp, where p is the smallest of the support sizes of A, B, and C.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 429-440, 1998
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  • 155
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    International Journal of Quantum Chemistry 70 (1998), S. 475-489 
    ISSN: 0020-7608
    Keywords: NO2 ; DVR representation ; conical intersection ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using available potential energy surfaces, a theoretical calculation of the $\tilde{A}^2B_2\leftarrow \tilde{X}^2A_1$ absorption spectrum of NO2 is presented. Energy levels and nuclear wave functions are calculated, using a discrete variable representation (DVR) basis expansion to solve the nuclear Schrödinger equation. Various energy regions of the absorption spectrum are considered. In the low-energy region, below the onset of the $\tilde{A}^2B_2$ excited state, accurate results are recovered in a one-electronic-state calculation. It is also shown that using a decoupled potential energy surface derived from Schryber potential, accurate results are also obtained in the two-coupled-state case. Calculations are also performed in the higher energy part of the spectrum up to 16,000 cm-1. Analysis of the calculated wave functions makes the assignment of vibrational quantum numbers possible for both electronic components to the various excited levels. Comparison with experimental results are presented. Reasonable agreement is obtained for the transition frequencies. An overall reliable reproduction of experimental data, including the intensities through Franck-Condon calculation, requires, however, the transition moment function as additional information. General conclusions concerning the limitation of the model are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 475-489, 1998
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  • 156
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    International Journal of Quantum Chemistry 70 (1998), S. 441-474 
    ISSN: 0020-7608
    Keywords: quantum fluid dynamics ; atom-laser interaction ; femtosecond dynamics ; density functional theory ; high harmonic generation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A comprehensive, nonperturbative, time-dependent quantum mechanical (TDQM) approach is proposed for studying the dynamics of a helium atom under an intense, ultrashort (femtoseconds) laser pulse. The method combines quantum fluid dynamics (QFD) and density functional theory. It solves a single generalized nonlinear Schrödinger equation of motion (EOM), involving time and three space variables, which is obtained from two QFD equations, namely, a continuity equation and an Euler-type equation. A highly accurate finite difference scheme along with a stability analysis is presented for numerically solving the EOM. Starting from the ground-state Hartree-Fock density for He at t=0, the EOM yields the time-dependent (TD) electron density, effective potential surface, difference density, difference effective potential, ground-state probability, 〈r〉, magnetic susceptibility, polarizability, flux, etc. By a Fourier transformation of the TD dipole moment along the linearly polarized-field direction, the power and rate spectra for photoemission are calculated. Eleven mechanistic routes for photoemission are identified, which include high harmonic generation as well as many other spectral transitions involving ionized, singly excited, doubly excited (autoionizing), and continuum He states, based on the evolution of the system up to a particular time. Intimate connections between photoionization and photoemission are clearly observed through computer visualizations. Apart from being consistent with current experimental and theoretical results, the present results offer certain predictions on spectral transitions which are open to experimental verification.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 441-474, 1998
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  • 157
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    International Journal of Quantum Chemistry 70 (1998), S. 491-501 
    ISSN: 0020-7608
    Keywords: positron-molecule complex ; positron affinity ; full variational molecular orbital method ; nuclear wave function ; orbital relaxation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Optimal Gaussian-type orbital (GTO) basis sets of positron and electron in positron-molecule complexes are proposed by using the full variational treatment of molecular orbital (FVMO) method. The analytical expression for the energy gradient with respect to parameters of positronic and electronic GTO such as the orbital exponents, the orbital centers, and the linear combination of atomic orbital (LCAO) coefficients, is derived. Wave functions obtained by the FVMO method include the effect of electronic or positronic orbital relaxation explicitly and satisfy the virial and Hellmann-Feynman theorems completely. We have demonstrated the optimization of each orbital exponent in various positron-atomic and anion systems, and estimated the positron affinity (PA) as the difference between their energies. Our PA obtained with small basis set is in good agreement with the numerical Hartree-Fock result. We have calculated the OH- and [OH-; e+] species as the positron-molecular system by the FVMO method. This result shows that the positronic basis set not only becomes more diffuse but also moves toward the oxygen atom. Moreover, we have applied this method to determine both the nuclear and electronic wave functions of LiH and LiD molecules simultaneously, and obtained the isotopic effect directly.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 491-501, 1998
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  • 158
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    International Journal of Quantum Chemistry 70 (1998), S. 527-527 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 159
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    International Journal of Quantum Chemistry 70 (1998), S. 503-513 
    ISSN: 0020-7608
    Keywords: ring currents ; conjugated molecules ; Pariser-Parr-Pople model ; valence bond method ; correction vector technique ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have studied magnetism and aromaticity of polycyclic ring systems by analyzing ring currents for different circulations in these molecules. The technique employed for calculating ring currents uses correction vectors which implicitly includes all the eigenstates of the Hamiltonian in the space of the chosen configurations. We have employed the Pariser-Parr-Pople Hamiltonian and have carried out full configuration interaction (CI) calculations for small systems and approximate CI calculations for large systems. The systems studied include polyacenes, nonaromatic ring systems including the C60 fragments pyracylene, fluoranthene, and corannulene, and heteroatomic systems with upto two six-membered rings. We find that in polyacenes, the aromaticity of the extreme phenyl rings reduces with increasing number of phenyl rings in the system, and it saturates at ≈⅔ the benzene value. In systems containing nonaromatic rings, we find paramagnetic or diamagnetic behavior for different circulations depending upon the number of atoms in the chosen ring cycle, in agreement with the 4n+2 rule. In corannulene, the largest fragment of C60 we have studied, the five-membered ring is weakly diamagnetic while the six-membered ring is more diamagnetic, although much less than in isolated benzene. The ring structures with heteroatoms studied are pyridine, pyrimidine, and its isomers, s-triazine, quinoline and its isomer, and quinazoline and its isomers. All these have similar ring currents as in their purely carbon counterparts, although ions of these molecules show interesting behavior.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 503-513, 1998
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  • 160
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    International Journal of Quantum Chemistry 70 (1998), S. 1099-1099 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 161
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    International Journal of Quantum Chemistry 70 (1998), S. 515-525 
    ISSN: 0020-7608
    Keywords: acetylcholinesterase ; acylation process ; transition state ; quantum chemistry ; catalytic mechanism ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The acylation process in the acetylcholinesterase (AChE)-catalyzed hydrolysis of the neurotransmitter, acetylcholine (ACh), has been determined with the semiempirical quantum chemical calculation method AM1 using the model molecules extracted from the X-ray crystal structure of Torpedo Californica AChE. For the sake of identifying the microfeatures of the mechanism of this reaction, two types of possible mechanisms, stepwise mechanism and cooperative mechanisms, were proposed and studied with AM1 methods. All the model molecules for the possible reactants, intermediates, transition states, and products in the reaction pathways of the two mechanisms were obtained. Energy profiles, the structural properties of the transition states, indicate that the acylation of AChE-catalyzed hydrolysis of ACh adopts the cooperative mechanism, i.e., the proton transfer from Ser220 of AChE to His440 occurs simultaneously with the nucleophilic attack of Ser200 to the carbonyl carbon atom of ACh. This result is in agreement with the kinetic data and the secondary isotope effects of AChE-catalyzed reactions.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 515-525, 1998
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  • 162
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    International Journal of Quantum Chemistry 70 (1998), S. 1137-1143 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The computed molecular surface electrostatic potentials of a group of anticonvulsants of various chemical types were investigated with the objective of identifying common features that may be related to their activities. The calculations were carried out with the density functional B3P86/6-31G* procedure, using HF/STO-3G*-optimized geometries. Analysis of several statistically based properties of the surface potentials indicates that the negative regions are of primary importance and that an optimum intermediate level of local polarity, or internal charge separation, is required.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1137-1143, 1998
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  • 163
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    International Journal of Quantum Chemistry 70 (1998), S. 1127-1136 
    ISSN: 0020-7608
    Keywords: pharmacophoric pattern ; antiepileptic activity ; conformational analysis ; N-valproyl glycine ; N-valproyl glycinamide ; valpromide ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two closely related N-substituted valpromide derivatives: N-valproyl glycinamide and N-valproyl glycine are comparatively analyzed, the first of which is antiepileptic active whereas the second is not. The study is based on a conformational analysis using an AM1 Hamiltonian that not only search for the lower energy structures of each derivative but also for the energy involved in their mutual interconversion. Open structures have been compared with cyclic ones, the latter including those stabilized by either inter or intra molecular hydrogen bonds (dimers and monomers, respectively). H-bond formation has been also evaluated by means of ab initio G94(6-31+G(d,p)) calculations for a smaller system (N-formylglycine/glycinamide) modeling both vacuum and solvent conditions. The conformational and electronic characteristics of the open and cyclic monomers, as well as of the dimer N-valproyl glycinamide and N-valproyl glycine structures are discussed. On the basis of the results of their comparative analysis, we have redefined the pharmacophore previously proposed for N-substituted valpromides [Tasso, Bruno-Blanch, Estiu, Int. J. Quant. Chem. 65(6), 1107 (1997)], relaxing some of the associated requirements. The corrected model requires one carbon atom or any bioisosteric substituent in an anticlinal conformation relative to the aminic nitrogen of the amide moiety, in addition to one hydrogen atom that should be antiperiplanar to the carbonyl oxygen. This model offers an explanation to the different response of N-valproyl glycinamide and N-valproyl glycine against convulsion, which is based on conformational restrictions.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1127-1136, 1998
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  • 164
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    International Journal of Quantum Chemistry 70 (1998), S. 1145-1157 
    ISSN: 0020-7608
    Keywords: phytochrome ; absorption spectra ; semiempirical ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Higher plants use the protein phytochrome as a photosensor. In physiological temperatures phytochrome exists in two forms: Pr and Pfr. The chromophore of phytochrome is an open-chain tetrapyrrole. On the pathway from Pr to Pfr four intermediates (Lumi-R, Meta-Ra, Meta-Rb, and Meta-Rc) can be distinguished, while only two (Lumi-F and Meta-F) can be seen on the way back from Pfr to Pr. We have used the x-ray structure of the C-Phycocyanin protein Fremyella diplosiphon bacteria as a template to build a model (∼200 atoms) that includes only the chromophore and five amino acids of the phytochrome (Arg316-Cys321-His322-Leu323-Gln324) around it. Using the existing experimental evidences, we have proposed a three-dimensional (3D) structure for Pr, Pfr, and intermediates and a mechanism for the photoisomerization as well. Structures were fully optimized using AM1 (Unichem package on a Cray J90-NACAD). Using the INDO/S method of Zerner and co-workers, we calculated the absorption spectra of the model compounds and compared them with the experimental data. The oscillator strength ratio is an indicator of the chomophore conformation in biliproteins. The calculated spectra reproduces well the spectra of the phytochrome (Pr, Pfr, and intermediates) except for the lower energy band. This result is attributed to the small number of amino acids in the models. The calculated ratios (fVIS/fUV-fosc of visible band over fosc of UV band and f2/f1-fosc of second absorption band over fosc of first absorption band) for the models match very well the experimental ratios obtained for the phytochrome (Pr, Pfr, and intermediates). This supports the proposed mechanism for the photoisomerization process.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1145-1157, 1998
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  • 165
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    International Journal of Quantum Chemistry 70 (1998), S. 1159-1168 
    ISSN: 0020-7608
    Keywords: nitrogenase ; nitrogen fixation ; INDO ; DFT ; PM3tm ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We follow the initial activation of the nitrogen molecule at the FeMo cofactor of nitrogenase and subsequently model the hydrogenation of N2 up to the fourth protonation step using the intermediate neglect of differential overlap quantum-chemical model. The results obtained favor a reaction mechanism going through hydrazido intermediates on the 4-Fe surfaces, externally to the FeMo cofactor. Calculations using density functional theory on smaller model systems also support the suggested mechanism over other possible schemes that involve early release of the first molecule of ammonia as a product of the enzymatic reaction. We also demonstrate that dielectric stabilization due to the protein around the cofactor could lower markedly the barrier for the product release as an ammonium ion.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1159-1168, 1998
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  • 166
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    International Journal of Quantum Chemistry 70 (1998), S. 1169-1175 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: RHF/6-31G* investigations of 4-, 5-, and 6-ethyl(Et)-indole-3-acetic acid (IAA) yielded 11 symmetry-unique local minima with syn-periplanar orientation of the —COOH group for each of these compounds. The global minima are of C1 symmetry in all cases. Comparison with earlier results shows that ethylation or chlorination in position 5 or 6 introduces only minor changes on the orientation of the acetic acid side group, with no effect on the reaction paths related to this group. For 4-Et-IAA, the deviations from unsubstituted IAA are larger but preserve the pattern of reaction paths that is present in unsubstituted IAA, which is in contrast to 4-Cl-IAA, where local minima and reaction paths are completely different.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1169-1175, 1998
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  • 167
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    International Journal of Quantum Chemistry 70 (1998), S. 1177-1184 
    ISSN: 0020-7608
    Keywords: pKa shift ; acid dissociation constant ; triple helix ; dielectric constant ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energetics of formation of a triple-helical structure in homopurine-homopyrimidine mixtures has been modeled using Poisson-Boltzmann calculations. Oligomers with the sequence d(TC)n and d(AG)n form hydrogen-bonded triple-helical structures of the form d(TC)n⋅d(AG)n⋅d(TC+)n. The third base, a pyrimidine in this case, forms Hoogsteen-type hydrogen bonds with the purine, requiring that the cytosine residues of the third strand protonate at N3. The pKa of cytosine, 4.3 in the isolated solvated molecule, is raised by the strong electrostatic field in the triple helix. We have done calculations of the effective pKa of this cytosine and compared the results with experimental studies of triple-helix formation as a function of pH. This provides a test of various models of the dielectric constant for triplex DNA and its local environment.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1177-1184, 1998
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  • 168
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    International Journal of Quantum Chemistry 70 (1998), S. 1195-1208 
    ISSN: 0020-7608
    Keywords: GABAB analogs ; pharmacophoric pattern ; molecular similarity ; quantum chemical calculations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In order to determine the structural requirements that are important for GABAB binding affinity, a quantum-chemical-based conformational study has been performed, followed by a similarity analysis which includes 12 GABAB analogs. Due to the flexibility of the structures, a semigrid GABAB analog [2RS-(5,5-dimethyl) morpholinyl-acetic acid] has been used as a template for the amonium moiety in order to help to identify the active conformation. Both in vacuo, and solvent-simulated calculations, for the physiological media modeled as water molecules, have been compared, for this analog, at ab initio (G94, 6-31+G(d,p)) and semiempirical (PM3) levels, respectively. On the basis of this comparison, the results of in vacuo PM3 calculations have been chosen for the similarity analysis. We have included, in the calculations, a group of molecules heterogeneous enough to become representative of the different families that can bind to the GABAB receptor site. Following their comparison we report the leading characteristics that can be related to their binding capability and define a pharmacophoric pattern for GABAB analogs. The latter is compared with the one previously found for the binding affinity at the GABAA receptor site.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1195-1208, 1998
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  • 169
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    International Journal of Quantum Chemistry 70 (1998), S. 1185-1194 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The integrated molecular transform (FTm) is a unitary numerical index of structure that is capable of uniquely representing different molecular structure conformations with the exception of enantiomers. Other molecular indices have been derived from FTm as well as from the normalized molecular moment (Mn), for example, the analogous electronic and charge transforms (FTe and FTc) and moments (Me and Mc). In this study, each of these indices was calculated for up to 10 sampled conformations of each of the C1-C10 normal alkanes as they were subjected to a standard annealing process. Statistical analyses of the resulting data in the individual series and subsequent box plots, permitting facile examination of those results, indicated that the respective transform indices (FTm, FTe, FTc) are unique, that is, with no statistically significantly overlap across the series. For the Mn and Me indices, the numerical values for methane overlapped those of ethane in the first instance and both ethane and propane in the second. The Mc index values overlapped in several instances in the series. Inasmuch as the noted molecular indices are based only on parameters of structural origin, these results have profound implications for the correlation and estimation of properties derived not only from a general structure representation, but also for those properties which may be dependent on specific molecular conformations. This includes the potential for indices of molecular flexibility and conformationally dependent atomic electron densities.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1185-1194, 1998
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  • 170
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    International Journal of Quantum Chemistry 70 (1998), S. 529-529 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No abstract.
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  • 171
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    International Journal of Quantum Chemistry 70 (1998), S. 1209-1215 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report on optimal molecular connectivity descriptors for nitrogen atoms in amines for use in structure-property correlations. The descriptors represent generalized molecular connectivity indices with adjusted diagonal entries in the adjacency matrices of the corresponding molecular graphs, such that the standard error in a regression for boiling points in a set of amines is minimized. Advantages of the so-optimized descriptors for multivariate regression analysis in structure-property-activity studies are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 1209-1215, 1998
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  • 172
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    International Journal of Quantum Chemistry 70 (1998), S. 583-589 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Recently, we used Helmholtz's theorem to construct an unambiguous exchange-correlation energy density for use in density functional theory. This energy density requires only knowledge of the density dependence of the exchange-correlation energy functional, EXC, for its calculation. We calculate this energy density for Hooke's atom in three different regimes: the high-density (or weakly correlated) limit; a moderate density, comparable to that of the He atom; and a low density, in which the system is strongly correlated. We compare the exact unambiguous energy density with approximate energy densities found from approximate energy functionals. The exchange-correlation energy can be deduced directly from the density in the highly correlated limit and a new formula for the high-density limit of the correlation energy is given.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 583-589, 1998
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  • 173
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    International Journal of Quantum Chemistry 70 (1998), S. 571-581 
    ISSN: 0020-7608
    Keywords: partitioning ; level shift ; quasi-degenerate PT ; Dyson equation ; geminals ; excited states ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For the treatment of electron correlation, one most often uses the Møller-Plesset (MP) partition which defines the zero-order Hamiltonian through the spectral resolution of the Fockian. We investigate how the MP partitioning can be improved while still using the Hartree-Fock (HF) reference state; and how the HF wave function can be substituted by a correlated one preserving the formal simplicity of the HF-based approach. To improve the MPn result, we introduce a fine tuning of energy denominators replacing the HF orbital energies with the ionization potentials obtained from the second-order Dyson equation. As this equation usually tends to close the gaps, a slight decrease of the denominators is expected, inducing an improvement of low-order correlation energies. We keep the simplicity of the MP partitioning and handle Dyson corrections as simple level shifts. Substituting doubly filled HF orbitals by strongly orthogonal geminals, one introduces a correlated reference state which is variational, size-consistent, and properly describes single-bond dissociation. This wave function, the antisymmetrized product of strongly orthogonal geminals (APSG), offers a good starting point for further corrections. We show that the use of an APSG reference state in the equation-of-motion technique leads to Tamm-Dankoff approach (TDA) equations which account for correlation effects in electronic excitation energies.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 571-581, 1998
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  • 174
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    International Journal of Quantum Chemistry 70 (1998), S. 591-600 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new model for the exchange potential in the framework of DFT is proposed. The potential is defined as 2αx∊xappr, where ∊xappr is the exchange-energy density and αx is not a constant but a functional αx[ρ] to be determined iteratively. The exact Fock expression and the LDA, GEA, and Becke88 approximations were used as ∊xappr. We provide results for atoms showing that this model potential yields total and exchange energies and other atomic properties that are in good agreement with Hartree-Fock values. In addition, total energies obtained by adding to the αx[ρ] approach correlation energy corrections computed via the WL and LYP functionals are in close accord with experimental values.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 591-600, 1998
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  • 175
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    International Journal of Quantum Chemistry 70 (1998), S. 557-570 
    ISSN: 0020-7608
    Keywords: electron correlation ; reduced density matrices ; N-representability ; cumulants ; particle-hole duality ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Through the 3,5-contracted Schrödinger equation (3,5-CSchE) quantum energies and 3-particle reduced density matrices (3-RDMs) are determined directly without wave functions. Since the 3,5-CSchE involves the 5-RDM, its solution is indeterminate without N-representability conditions. However, the indeterminacy of the 3,5-CSchE may be removed through a reconstruction strategy for building the 4- and 5-RDMs from the 3-RDM. We present a systematic procedure for obtaining corrections for Valdemoro's reconstruction functionals from two complementary approaches, the particle-hole duality and the theory of cumulants. With the cumulants we are able to demonstrate that we have obtained all terms in the reconstruction functionals which may be written as antisymmetric products of the lower rdms. The cumulants allow us to understand the reconstruction functionals in terms of a renormalized many-body perturbation theory. The reconstruction functionals also lead to a natural generalization of Wick's theorem for evaluating expectation values of fermionic annihilation and creation operators with respect to correlated reference states. Previous work [Phys. Rev. A 57, 4219 (1998)] has explored the determination of correlation energy and 2-RDMs through the 2,4-CSchE, also known as the density equation. Because the reconstruction functionals employed with the 3,5-CSchE depend only on the antisymmetric products of lower RDMs in constrast to those used with the 2,4-CSchE, the 3,5-CSchE method presented here does not require the solution of systems of linear equations during reconstruction or the storage of the reconstructed RDMs. Application of the 3,5-CSchE technique to a quasi-spin model generates ground-state energies and 2-RDMs similar in accuracy to single-double configuration interaction (SDCI). We employ a simple iterative procedure for the solution of the 3,5-CSchE without traditional diagonalization. The CSchE techniques offer an approximate solution of the N-representability problem and a new approach to electron correlation.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 557-570, 1998
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  • 176
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    International Journal of Quantum Chemistry 70 (1998), S. 601-611 
    ISSN: 0020-7608
    Keywords: coupled-cluster theory ; triple-excitation corrections ; equation-of-motion coupled-cluster theory ; perturbation theory ; analytic energy gradient theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A correction for the effects of connected triple excitations to the coupled-cluster singles and doubles energy is studied. The approach relies on the fact that the ground-state coupled-cluster energy may be viewed as an eigenvalue of an effective (similarity transformed) Hamiltonian with associated left and right eigenvectors. Taking these as zeroth-order wave functions and using a conventional partitioning of the bare electronic Hamiltonian, the lowest order triple-excitation correction to the correlation energy is found to have an asymmetric form that involves cluster amplitudes as well as components of the left eigenvector. The popular (T) correction may be viewed as an approximation to the present approach, though the latter is approximately a factor of 2 more expensive to compute. The method is applied to a number of difficult cases, including the harmonic vibrational frequencies of ozone and the equilibrium bond length of N2. In addition, the theory of analytic gradients for the method is outlined and some aspects regarding its implementation are discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 601-611, 1998
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  • 177
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    International Journal of Quantum Chemistry 70 (1998), S. 623-626 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The leaky aquifer function W(x, y) is an incomplete Bessel function which has had application in hydrology and more recently in electronic-structure calculations. This article presents an expansion which improves the efficiency of the calculation of W in the only part of its range not treated adequately by previously published methods, namely, the regime where x and y are both larger than unity but one is much larger than the other.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 623-626, 1998
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  • 178
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    International Journal of Quantum Chemistry 70 (1998), S. 613-622 
    ISSN: 0020-7608
    Keywords: excitation energies ; dynamic correlation effects ; perturbation theory ; MBPT ; multireference perturbation theory ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present the formalism for the treatment of several states of the same symmetry in basis-set reduction (BSR), a form of second-order Brillouin-Wigner multireference perturbation theory, which incorporates the first-order correction of the primary-space wave function with respect to its orthogonal complement. We benchmark this method for some valence and some Rydberg excitations of four small molecules (O2, CO, ethene, and ozone). In direct comparison with the underlying MR-SDCI benchmark results, we find an average accuracy of 0.2 eV or better for the excitation energies of the molecules considered and demonstrate the stability of the method with increasing size of the basis set and primary space. We argue that the configuration-based approach in BSR allows an accurate description of dynamical correlation effects with minimal primary space wave functions, containing far fewer configurations than are required for a CASSCF-based perturbative treatment of the molecules.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 613-622, 1998
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  • 179
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    International Journal of Quantum Chemistry 70 (1998), S. 627-635 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An implicit split-operator FFT algorithm for the numerical solution of the time-dependent Schrödinger equation is implemented for the electronic structure of H2+ and and H2. The covalent versus separated-atoms behavior is described by two distinct steady states to which the imaginary-time Schrödinger solution evolves for small or large internuclear distances, respectively.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 627-635, 1998
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  • 180
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    International Journal of Quantum Chemistry 70 (1998), S. 637-650 
    ISSN: 0020-7608
    Keywords: excited states ; modern valence bond theory ; CASVB ; spin-coupled wave function ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The valence bond description of excited states is considered in the context of the CASVB approach, with emphasis on the simultaneous optimization of orbitals and structure coefficients for highly general types of wave function, as well as the close connection to the complete active space self-consistent field (CASSCF) method. In addition to fully variational optimization of modern valence bond (VB) wave functions, one may also generate compact representations of CASSCF wave functions, essentially irrespective of their nature. Consequences of generalizing the CASVB methodology to other than the lowest-lying state of a given symmetry are explored for both the overlap- and energy-based optimization criteria. The methodology is illustrated by means of applications to the 21Ag state of trans-1,3-butadiene, the c˜1A1 state of methylene, and the first excited singlet state of benzene.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 637-650, 1998
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  • 181
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    International Journal of Quantum Chemistry 70 (1998), S. 659-669 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A procedure for the calculation of molecular properties in the full quantum mechanical treatment is presented. We formulate the non-Born-Oppenheimer density functional theory and propose its numerical scheme. We numerically calculate the energy, particle densities, interparticle distance, and (hyper)polarizability of the hydrogen molecule and its isotopes using this method and discuss isotope effects on the physical properties.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 659-669, 1998
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  • 182
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    International Journal of Quantum Chemistry 70 (1998), S. 651-658 
    ISSN: 0020-7608
    Keywords: electron propagator ; propagator theory ; Brueckner orbitals ; anions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Vertical electron detachment energies of F- and OH- have presented difficulties for perturbative electron propagator methods. A recently derived, nondiagonal, renormalized approximation and two additional improvements are studied here. These improvements are replacement of the Hartree-Fock reference determinant by a determinant of approximate Brueckner orbitals generated by a coupled-cluster doubles calculation and retention of correlation terms in the 2hp-2hp block of the superoperator Hamiltonian matrix. Agreement with experiment is significantly better with these methods. When Hartree-Fock orbitals are used, electron detachment energies are underestimated, but approximate Brueckner orbitals lead to overestimates.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 651-658, 1998
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  • 183
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    International Journal of Quantum Chemistry 70 (1998), S. 681-691 
    ISSN: 0020-7608
    Keywords: excited states ; Kato's theorem ; adiabatic connection ; optimized potential method ; KLI approximation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Density functional theory for a single excited state is presented using Kato's theorem and the concept of adiabatic connection. The degenerate case is also detailed. The optimized potential method is generalized. The generalized Krieger, Li, and Iafrate (KLI) approximation is derived.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 681-691, 1998
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  • 184
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    International Journal of Quantum Chemistry 70 (1998), S. 671-680 
    ISSN: 0020-7608
    Keywords: density-functional theory ; exchange-correlation potential ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this article, we derive the analytical asymptotic structure in the classically forbidden region of atoms of the Kohn-Sham (KS) theory exchange-correlation potential defined as the functional derivative νxc(r)=δExcKS[ρ]/δρ(r), where ExcKS[ρ] is the KS exchange-correlation energy functional of the density ρ(r). The derivation is via the exact description of KS theory in terms of the Schrödinger wave function. As such, we derive the explicit contribution to the asymptotic structure of the separate correlations due to the Pauli exclusion principle and Coulomb repulsion, and of correlation-kinetic effects which are the source of the difference between the kinetic energy of the Schrödinger and KS systems. We first determine the asymptotic expansion of the wave function, single-particle density matrix, density, and pair-correlation density up to terms of order involving the quadrupole moment. For atoms in which the N- and (N-1)-electron systems are orbitally nondegenerate, the structure of the potential is derived to be $\nu_{xc}({\bf r})\mathrel{\mathop{\sim}\limits_{r\to\infty}}-1/r-\alpha/2r^4+8\kappa_0\chi/5r^5$, where α is the polarizability; χ, an expectation value of the (N-1)-electron ion; and κ02/2, the ionization potential. The derivation shows the leading and second terms to arise directly from the KS Fermi and Coulomb hole charges, respectively, and the last to be a correlation-kinetic contribution. For atoms in which the N-electron system is orbitally degenerate, there are additional contributions of O(1/r3) and O(1/r5) due to Pauli correlations. We show further that there is no O(1/r5) contribution due to Coulomb correlations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 671-680, 1998
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    International Journal of Quantum Chemistry 70 (1998), S. 693-701 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Small nickel clusters up to the tetramer are investigated within the framework of the local spin density functional theory. Several competitive states are studied for the dimer. Both the geometry and the spin state are optimized for several starting symmetries in the case of the trimer and the tetramer. Moreover, all those calculations are followed by a vibrational analysis in order to discriminate between real minima and saddle points on the potential energy surface. It is found that Jahn-Teller deformations play an important role in determining transition-metal cluster geometries. Equilibrium geometries, electronic configurations, binding energies, magnetic moments, and harmonic frequencies are reported in this work.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 693-701, 1998
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  • 186
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    International Journal of Quantum Chemistry 70 (1998), S. 703-710 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The form Ψ(x, t)=[F0(x)+F1(x, t)e-iωt+F-1(x, t)eiωt]e-iEt/ℏ is used for the wave function in the transient solutions. This expression is similar to the three dominant terms in the steady-state solution from the Floquet theory, except that now F1 and F-1 depend on t as well as x. The function F0 is the static solution, and separate partial differential equations are given for F1 and F-1. Polynomial extrapolation is used to satisfy boundary conditions at the ends of the grid. The numerical solutions are shown to converge and to be numerically stable even for simulated times exceeding 2000 cycles of the radiation field. The examples show delays corresponding to the semiclassical tunneling transit time, the classical time for traversing the inverted barrier. A resonance is seen when electrons promoted above the barrier by absorbing quanta from the radiation field have the closed line integral of momentum between the turning points equal to an integral multiple of Planck's constant. A second resonance occurs when the period of oscillation for the radiation equals the semiclassical tunneling transit time for electrons that absorb one photon from the radiation but are still below the barrier. This resonance decays at a rate corresponding to the tunneling dwell time, and, thus, it is not present in the steady state. These observations suggest a semiclassical picture of the tunneling process.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 703-710, 1998
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  • 187
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    International Journal of Quantum Chemistry 70 (1998), S. 711-727 
    ISSN: 0020-7608
    Keywords: density matrix response functions ; N-scaling ; time-dependent Hartree-Fock ; nonlinear response ; bosonization ; carotenoids ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The response of the single-electron density matrix of a many-electron system to an external field is calculated using the time-dependent Hartree-Fock (TDHF) technique. A procedure for inverting the resulting nonlinear response functions to obtain an effective quantum multilevel system that has the same response is developed. The number of effective states is gradually increased as higher-order nonlinearities are computed. The complete set of intrastate and interstate density matrices and excited-state energies can be calculated. A favorable N-scaling of computational effort with size can be obtained making use of the localization of the optical transitions in real space.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 711-727, 1998
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  • 188
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Static second hyperpolarizabilities were calculated for molecules including tetrahydrofuran homologs by ab initio molecular orbital methods at the Hartree-Fock and various correlation levels. Substitution of the heteroatom with a heavier atom is found to be effective for increase of the second hyperpolarizability of these homologs. Comparison between the present results and previous results for furan homologs shows that π-conjugation is not effective for the increase of second hyperpolarizability of the molecules when the heteroatom is heavier.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 737-743, 1998
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    International Journal of Quantum Chemistry 70 (1998), S. 729-736 
    ISSN: 0020-7608
    Keywords: ionization potentials ; electron propagator ; MCSTEP ; NH2 ; Green's function ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: With electron propagator methods, vertical ionization potentials (IPs) and electron affinities can be calculated directly. Our implementation, known as the multiconfigurational spin tensor electron propagator method (MCSTEP), is specifically designed for open-shell and highly correlated initial states. The initial state that is usually used in MCSTEP is a complete active space (CAS) MCSCF state. We have previously demonstrated that a small balanced CAS is the optimal choice for the MCSTEP initial state. In this article, we examine two ways of determining this balanced CAS for the MCSTEP initial state. With these choices, we calculate the low-lying vertical MCSTEP IPs of NH2 and compare them with experiment for the three lowest IPs. With (aug-)cc-pVTZ, (aug-)cc-pVQZ, and extrapolated complete basis set limits, the MCSTEP IPs for both CAS choices are in very good agreement with experiment. We also calculate the next two vertical IPs where no accurate experimental estimates are as yet available. The “SCF-balanced” CAS choice is advantageous to use with MCSTEP because of simplicity, while the “SDCI-balanced” CAS is appropriate for use with MCSTEP when the initial MCSCF has undesired properties.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 729-736, 1998
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    International Journal of Quantum Chemistry 70 (1998), S. 745-750 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: (CH3)2NC6H4NC6H4O is a merocyanine dye that exists in resonance between the two extreme conformations of a keto and an eno form. The keto form is more stable in the gas phase and the eno form is believed to be more stable in solution. We show that the keto form can prevail in nonpolar solvents, but in polar solvents like chloroform, the eno form should be dominant. Analysis is made of the solvent effects in the low-lying absorption transition and its consequence in the first dipole hyperpolarizability. We show by explicit calculations that the hyperpolarizability of the eno form is one order of magnitude greater than in the keto form. We then contend that this structure dependence may also lead to very large changes of the hyperpolarizability of similar molecules and polymers in solvents.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 745-750, 1998
    Additional Material: 4 Ill.
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  • 191
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    International Journal of Quantum Chemistry 70 (1998), S. 763-770 
    ISSN: 0020-7608
    Keywords: electromagnetism ; nonlinear optics ; stratified system ; Maxwell's equations ; transfer matrix ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We propose a computational technique to evaluate the reflectivity and the transmission of the harmonics generated by a planar-stratified material containing nonlinear layers. Maxwell's equations are solved and the scattering boundary conditions are implemented using a transfer matrix technique. As our goal beyond this study is to model sum-frequency generation spectra, our approach is limited to second-order processes. The great advantage of this algorithm is that owing to a self-consistent procedure the nonlinear scattering problem is reduced to the repeated solving of linear equations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 763-770, 1998
    Additional Material: 2 Ill.
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  • 192
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    International Journal of Quantum Chemistry 70 (1998), S. 751-761 
    ISSN: 0020-7608
    Keywords: electronic second hyperpolarizability ; polysilane ; frequency dispersion ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The frequency-dependent electronic second hyperpolarizability of increasingly large polysilane chains is computed for the most common nonlinear optical (NLO) processes at the time-dependent Hartree-Fock level with the 6-31G atomic basis set. Due to σ-conjugation, the longitudinal component (γLe) turns out to be dominant. Its nonresonant dispersion relations are described by the coefficients of the power expansion formula, γLe(-ωσ; ω1, ω2, ω3)=γLe(0; 0, 0, 0)[1+AωL2+BωL4+CωL6+···], where ωL2=ωσ2+ω12+ω22+ω32 and γLe(0; 0, 0, 0) is the static limit value. In the infinite chain length limit, the CHF/6-31G static longitudinal electronic second hyperpolarizability per Si2H4 unit cell is estimated to attain 463±10×103 a.u. whereas the A coefficient reaches 27.8±0.9 a.u. The accuracy that could be reached from using this power expansion expression for estimating the second hyperpolarizability for other optical frequencies is discussed.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 751-761, 1998
    Additional Material: 3 Ill.
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  • 193
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    International Journal of Quantum Chemistry 70 (1998), S. 771-778 
    ISSN: 0020-7608
    Keywords: electric field effects ; hyperfine interactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A recently published theory of electric field effects on electron spin resonance hyperfine couplings [Phys. Ref. Lett. 79, 379, (1997)] is extended to nuclear quadrupole coupling. With the use of the ab initio coupled Hartree-Fock approach and augmented Sadlej basis set, results are obtained for the first-order corrections to the isotropic and anisotropic parts of hyperfine coupling tensor and the electronic part of the electric field gradient tensor for 17O and 2H nuclei in OH radical. The first-order coefficients exhibit a number of interesting features. The calculated results, in general, appear to be insensitive to the bond-centered polarization functions used in the calculation.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 771-778, 1998
    Additional Material: 7 Tab.
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  • 194
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    International Journal of Quantum Chemistry 70 (1998), S. 779-788 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ground-state density amplitude {ρ(r)}1/2 for atoms and molecules satisfies a Schrödinger equation in which the customary one-body potential energy V(r) of density functional theory is supplemented by the addition of the Pauli potential Vp(r). Since neither the exchange-correlation potential Vxc or Vp are presently known as functionals of the electron density ρ(r), approximations are currently unavoidable. Here, widespread use is made of semiclassical approximations, within a self-consistent field framework both with and without magnetic fields. The importance of low-order gradient quantities ∇2ρ/ρ and (∇ρ/ρ)2 is one focal point, while a generalized low-density approximation is another. New relativistic differential equations are given. Then, the arguments are generalized to embrace the so-called Slater sum P(r, β) : β=(kβT)-1, of statistical mechanics, generated by the one-body potential V(r). This is a generalized partition function, and differential equations are set up for this quantity P(r, β) with and without external fields. Finally, some potentially fruitful directions for treating cylindrically symmetric inhomogeneous electron liquids are outlined, following the very recent work of Amovilli and March. These include modeling the Slater sum along the electric field direction for the Stark effect in a hydrogenlike atom.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 779-788, 1998
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  • 195
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    International Journal of Quantum Chemistry 70 (1998), S. 789-795 
    ISSN: 0020-7608
    Keywords: strong magnetic fields ; ground states ; binding properties ; symmetry transitions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ground states of small atoms and molecules, namely those of the hydrogen, helium, and lithium atoms and the hydrogen molecular ion and hydrogen molecule, are studied in the presence of an external magnetic field. For the one-electron systems the ground state is of the same symmetry for arbitrary field strengths, and the corresponding binding energy shows a monotonic increase with increasing field strength. More interesting, the two- and three-electron systems show ground-state transitions which involve both transitions in the spin multiplicity and spatial quantum numbers. An outlook on the expected cascade of transitions in many electron atoms and molecules is provided.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 789-795, 1998
    Additional Material: 3 Ill.
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  • 196
    ISSN: 0020-7608
    Keywords: pulsed magnetic field ; Zeeman effect ; quadruple metal bonds ; octachlorodirhenate ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A procedure is given for the analysis of optical absorption data acquired in the hostile environment of a pulsed 1000-Tesla magnet.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 797-804, 1998
    Additional Material: 9 Ill.
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  • 197
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    International Journal of Quantum Chemistry 70 (1998), S. 805-812 
    ISSN: 0020-7608
    Keywords: negative-energy orbitals ; Dirac equation ; relativistic configuration interaction ; Breit-Dirac-Hartree-Fock ; minimax theorem ; best orbitals ; natural orbitals ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: When the one-body part of the relativistic Hamiltonian H is a sum of one-electron Dirac Hamiltonians, relativistic configuration interaction (CI) calculations are carried out with an ad hoc basis of positive-energy orbitals, {uj+, j=1, 2,…,m} and, more recently, with the full bases of positive-energy and negative-energy orbitals, {uj+, uj-, j=1, 2,…,m}. The respective eigenproblems H+Ck+=Ek+Ck+, k=1, 2,…,N(m), and HCk=EkCk; k=1, 2,…,N(2m) are related through Ek+≤Ek+N(2m-N(m) [R. Jáuregui et al., Phys. Rev. A 55, 1781 (1997)]. This inequality becomes an equality for the independent-particle Hartree-Fock model and some other simple multiconfiguration models, leading to an exact decoupling of positive-energy and negative-energy orbitals. Beyond Hartree-Fock, however, it is generally impossible to achieve an equality. By definition, optimal decoupling is obtained when the difference Ek+N(2m)-N(m)-Ek+ is a minimum, which amounts to maximize the energy Ek+ with respect to any set of m functions in the 2m-dimensional space {uj+, uj-, j=1, 2,…,m}. Straight maximization is a slowly convergent process. Fortunately, numerical calculations on high-Z atomic states show that optimally decoupled, or best positive-energy orbitals are given, to within 6 decimals in atomic units by the positive-energy natural orbitals of the full eigenfunction Ck+N(2m)-N(m). Best orbitals can accurately be obtained through CI-by-parts treatments for later use in large-scale relativistic CI, as illustrated with Ne ground-state calculations.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 805-812, 1998
    Additional Material: 5 Tab.
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  • 198
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    International Journal of Quantum Chemistry 70 (1998), S. 813-823 
    ISSN: 0020-7608
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Second-order multiconfigurational Dirac-Fock self-consistant-field calculations are reported for the ground and low-lying excited states of boronlike ions, Ne+5, P+10, Ca+15, Mn+20, Zn+25, and Mo+37. Relativity alters an important class of strong configuration interaction, asymptotic CI, along the isoelectronic sequence, and multiconfigurational Dirac-Fock self-consistent-field calculations including n=2 and n=3 complexes are sufficient to accurately predict fine-structure splittings for larger Z, while for small Z, it is necessary to accurately account for the remaining dynamical correlation.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 813-823, 1998
    Additional Material: 7 Tab.
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  • 199
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    International Journal of Quantum Chemistry 70 (1998), S. 825-830 
    ISSN: 0020-7608
    Keywords: molybdenum ; phase stability ; relativity ; Douglas-Kroll ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The body-centered cubic-face-centered cubic (bcc-fcc) structural phase stability of molybdenum (Mo) is studied as a function of volume with both nonrelativistic and scalar-relativistic linear combinations of Gaussian-type orbitals-fitting functions (LCGTO-FF) calculations. It is demonstrated that relativity has a significant, albeit small effect, on the bcc-fcc structural energy difference, which increases with pressure. The scalar-relativistic structural energy difference curve is shown to be in excellent agreement with an earlier scalar-relativistic calculation using the full-potential linear muffin-tin orbital (FP-LMTO) method, clearly demonstrating the ability of the scalar-relativistic LCGTO-FF method to resolve an extremely subtle relativistic effect. It is argued that relativity will tend to delay pressure-induced structural phase transitions that are triggered by electron band reordering.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 825-830, 1998
    Additional Material: 2 Ill.
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  • 200
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    International Journal of Quantum Chemistry 70 (1998), S. 831-853 
    ISSN: 0020-7608
    Keywords: Liquid water ; H-bond pattern ; orientational defect ; water cluster ; “dangling” bond ; ab initio HF/6-311(d, p) calculation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Fifteen different structures of the water hexamer found ab initio within the 6-311G(d, p) basis set in the interval of 1.75 kcal/mol above the global minimum represent an unprecedented wide range of conformational plasticity of liquid water. The present work also provides the first ab initio demonstration of the existence of pentacoordinated water clusters of an orientational defect type and elaborates their properties.   © 1998 John Wiley & Sons, Inc. Int J Quant Chem 70: 831-853, 1998
    Additional Material: 6 Ill.
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