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  • 1975-1979  (745)
  • 1890-1899
  • 1840-1849
  • Computational Chemistry and Molecular Modeling  (745)
  • 101
    Electronic Resource
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 16 (1979), S. 221-241 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum chemical results will be presented on drugs, carcinogens, teratogens, and endogenous biomolecules using our new nonempirical ab initio MODPOT/VRDDO method, which incorporates as options to our ab initio LCAO-MO-SCF/CI programs ab initio effective core model potentials (MODPOT) permitting one to calculate only the valence electrons explicitly yet accurately and an integral prescreening technique (VRDDO, variable retention of diatomic differential overlap) especially effective for spatially extended molecules. For molecules of the size of those of interest the MODPOT/VRDDO calculations run an order-of-magnitude faster than with our own fast ab initio programs and still retain accuracy to the third decimal place for the valence electron properties. We have also just implemented a new efficient MERGE technique which allows us to reuse integrals from a common skeletal fragment and only to have to recalculate those for a new atom or group or a change in its position. Examples will be presented of the use of this technique on a carcinogenic polycyclic aromatic hydrocarbon and its metabolites. The pKa's, oil-water partition, and drug distribution coefficients as a sensitive function of pH have been measured for a number of drugs as well as for relevant endogenous biomolecules. The pH dependence of the lipophilicities of such molecules has profound implication on appropriate use of such data in QSAR studies.
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  • 102
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    International Journal of Quantum Chemistry 16 (1979), S. 557-571 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The spectrum of a two-component solid solution with a nondiagonal disorder is studied in the framework of the average T matrix method. For a one-dimensional system in the nearest-neighbor approximation the criteria for the system parameters are given such that at an in-band resonance, one or two “impurity bands” may be realized, and the corresponding model calculation is performed. In the single-site approximation an expression of the self-energy part of a nondiagonal disordered system Green's function is found taking into account multiple occupancy corrections. The possibility of using it to describe a disordered system excitation spectrum and the calculation of state density moments are discussed.
    Additional Material: 4 Ill.
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  • 103
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 16 (1979), S. 527-541 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The processes of radiationless conversion in aromatic and heteroaromatic molecules are investigated theoretically. The values of constant rates of internal conversion are calculated. The theoretical estimation of constant rates of S-T conversion aromatic hydrocarbon molecules and in their carbonyl-, thiocarbonyl-, and nitroderivatives and in azaheterocyclic molecules are given. The S-T conversion probability between the states of different orbital nature (nπ* and ππ*) is equal to ca. 1010-1011 sec-1 that is two to four orders higher than the conversion probability between the states of the same orbital nature. It is shown that the process of T-S conversion may be described in the second and in the highest orders of perturbation theory. The luminescent characteristics of molecules are connected with the relative position of electron states of different orbital nature and multiplicity and conversion characteristics.
    Additional Material: 5 Ill.
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  • 104
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    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 16 (1979), S. 573-604 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A review of recent theoretical studies of molecules of interest to photosynthesis is given, in which the results of ab initio self-consistent-field plus configuration-interaction studies are discussed. Ground-state and low-lying excited singlet and triplet state descriptions are presented for six molecules, including Mg-porphine, Mg-chlorin, ethyl chlorophyllide a, and their corresponding magnesium-free analogs. The data are then used to rationalize a variety of observed properties, including molecular orbital structure, ionization potentials, chemical reactivity, Franck-Condon transition energies, oscillator strengths, transition polarizations, and other properties. As a result, relatively comprehensive and complete descriptions of the electronic structural features of chlorophyll a and related molecules are obtained, which are in general in good agreement with available experimental data, but which also provide new concepts and reinterpretation of existing data in several instances.
    Additional Material: 21 Ill.
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  • 105
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    International Journal of Quantum Chemistry 16 (1979), S. 623-629 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Thermodynamics of the melting of a DNA-type macromolecule is studied theoretically. Elements of the macromolecule are able to annex a low-molecular impurity from the solvent (e.g., metal ions). Two models of the annexing of the impurity to the macromolecule are analyzed. It is shown that the concentration dependence of the helix-coil phase transition temperature is describable by a non-monotonic function in the case of certain relations between parameters.
    Additional Material: 4 Ill.
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  • 106
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    International Journal of Quantum Chemistry 16 (1979), S. 615-622 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The SCF FPT method in the INDO approximation of molecular orbital theory is employed for calculations of 1H NMR cisoidal coupling constants in model compounds. Obtained results are used for finding conformational states of α-xylo-, β-lyxo-, and α-2′-deoxyribonucleosides in solution.
    Additional Material: 6 Ill.
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  • 107
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    International Journal of Quantum Chemistry 16 (1979), S. 605-613 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The semiempirical MINDO/3 method with complete optimization of geometry is employed to calculate the electronic ground-state properties (dipole moments and ionization potentials) and the energies of various tautomeric forms of uracil, uracil monoanion, cytosine, and isocytosine. The results are shown to be consistent with most of the experimental data. Accuracy of various quantum-mechanical methods is discussed. Particular attention is paid to the influence of the geometry optimization on energy differences between various tautomers. Some qualitative conclusions of biological importance are drawn from these calculations.
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  • 108
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    International Journal of Quantum Chemistry 16 (1979), S. 631-639 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio SCF computations indicate that the formation of an adduct of glyoxal to the guanidinium ion occurs in two steps. The first addition should occur on an NH2 group, rather than on NHCH3, and the formation of an unsymmetrical adduct IV is competitive and may be even favored over that of the symmetrical adduct III suggested by Takahashi. The barrier for that reaction is higher than for a similar reaction with guanine. The formation of a Schiff base between glyoxal and the guanidinium ion is disfavored because of the large endothermicity calculated for the process, much larger than that predicted for Schiff base formation with simple neutral or protonated amines.
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  • 109
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper analyzes the low-temperature magnetic circular dichroism of NO-Fe(II)hemoproteins in detail. We include the Jahn-Teller effect in our consideration of the low-temperature MCD results.
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  • 110
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    International Journal of Quantum Chemistry 16 (1979), S. 891-895 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The unrestricted HF method in the INDO approximation with optimized geometry was used to describe the electronic structure of the hetero-ring of verdazyl and the derivatives of the latter. The results obtained are in good agreement with the experimental EPR spectra of triphenylverdazyl radical and its dipole moment. These data may be a basis for understanding and predicting the chemical properties and reactivity of verdazyl and its derivatives.
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  • 111
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    International Journal of Quantum Chemistry 16 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 112
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    International Journal of Quantum Chemistry 16 (1979), S. 917-930 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A free radical was produced enzymatically by incubating benzo(a)pyrene with liver microsomes. This radical, identified as the 6-oxybenzo(a) pyrene radical, was sufficiently reactive to bind covalently with nucleic acid bases. Similar reactive free radicals were produced enzymatically from anthanthrene and 10-aza-benzo(a)pyrene, which are carcinogenic in spite of lacking so-called “bay regions.” Hepatocarcinogens such as 3′-methyl-4-dimethylaminoazobenzene and related compounds, naphthylamines, and 2-acetylaminofluorene yield free radicals after being incubated with liver microsomes. Thus, various kinds of chemical carcinogens are found to be converted to free radicals, suggesting causal significance for the formation of free radicals in chemical carcinogenesis.
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  • 113
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    International Journal of Quantum Chemistry 16 (1979), S. 1009-1019 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Size and shape parameters for the core, bonding, and lone electron pairs of the ten-electron hydrides (CH4, NH3, H2O, HF) were determined from ab initio MO wave functions using various Gaussian basis sets. The fundamental features of approximate electron pair loge representation are somewhat more sensitive to the quality of the basis functions than the molecular total energy. The total size of the molecular electron distribution is less affected by basis set variations than its components: the core, bonding, and lone pair sizes. There is an apparent tendency to “preserve” the total size of molecular distribution.
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  • 114
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    International Journal of Quantum Chemistry 16 (1979), S. 1021-1031 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We consider the effects of a non-muffin-tin charge density in the multiple-scattering method. The study is carried out by means of a parametrized electronic density, which is used in a variational expression for the energy of the molecular system. We show that, at least in two situations, the parametrized density reproduces the true density very well. In a numerical study of the electronic configuration of the CH4 molecule, we show that the non-muffin-tin density may shift the one-electron energies by as much as 1 eV and the total energy by as much as 1 Ry.
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  • 115
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    International Journal of Quantum Chemistry 16 (1979), S. 1033-1049 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For each of HNO, FNO, LiNO, LiON and HF2-, ab initio valence-bond wave functions are reported for the four-electron three-center bonding unit which involves one of the following sets of atomic orbitals: (a) NX σ-bond (X = H, For Li) and oxygen 2pπ′; (b) LiO σ-bond and nitrogen 2pπ′; (c) hydrogen 1s and fluorine 2pσ. Six S = 0 valence-bond structures pertain for this type of bonding unit. For HF2- and FNO, the calculated bond-eigenfunction coefficients for some of these valence-bond structures differ appreciably according to whether the Slater determinants include only the electrons of the four-electron three-center bonding unit, or all of the valence-shell ± inner-shell electrons. For HNO, LiNO, and LiON, the all-electron and all valence-shell electron calculations generate similar sets of bond-eigenfunction coefficients. For each of the nitrosyl systems, the bond-eigenfunction coefficient with largest magnitude is calculated to be that for which zero atomic formal charges occur in the valence-bond structure. Qualitative valence-bond and “increased-valence” descriptions of the bonding are presented.
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  • 116
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    International Journal of Quantum Chemistry 16 (1979), S. 1051-1068 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Various electronic indices calculated by the CNDO/s-CI method for uracil, 5-fluorouracil, thymine, and cytosine and the Woodward-Hoffmann rule applied to the photodimerization of these molecules lead us to the following conclusions: (i) decrease of the C5—C6 bond order consequent to excitation is generally correlated with the photodimerization reaction for all the biological pyrimidines; (ii) excited pyrimidine molecules may be nonplanar and the excitation would be delocalized over both the molecules which photodimerize; (iii) electrostatic interactions may play a significant role in the initial stages of the photodimerization reaction; (iv) singlet precursors to the stable triplet photodimers may exist; and (v) electron density does not, in general, increase in the C5—C6 bond in the excited state as compared to the ground state, contradicting the proposals of some earlier workers. Hybrid population densities and σ-bond orders have been calculated for the first time for the molecules. Fluorine in 5-fluorouracil perturbs the hybrid populations as compared to those of uracil mainly in its vicinity.
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  • 117
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    International Journal of Quantum Chemistry 15 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 118
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    International Journal of Quantum Chemistry 15 (1979), S. 1-5 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that multiple scattering Xα calculations on Ni(CO)4 predict a strong back-donation effect contrary to what is stated in previous papers on the subject.
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  • 119
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    International Journal of Quantum Chemistry 15 (1979), S. 15-35 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For a few organic semiconductors we present calculations performed on a simple model by means of the field-theoretical formulation of the “different-orbitals-for-different-spins” method. The numerical methods are extensively described and the results are discussed in comparison with other methods existing in the same domain.
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  • 120
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    International Journal of Quantum Chemistry 15 (1979), S. 37-47 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A semiempirical molecular orbital (MO) method is outlined that is designed for correlation and prediction of the spectra and other properties of complex molecules. Within the ZDO approximation, the reactive (π-bonding and nonbonding) electrons are treated explicitly considering the σ electrons as an unreactive static potential. The electronic repulsion integrals are evaluated using the multipole expansion formulas, which allow the characterization of each orbital by specification of its quadrupole moment, from which all two-center repulsion integrals involving it would be computed. A preliminary application of the all reactive electron self-consistent field (ARE-SCF-CI) MO method is made to organic carbonyls as well as some selected cyanine dyes. The predicted n → π* and π → π* transition energies and intensities are in good agreement with experimental data. The calculated ionization potentials are 0.2-0.7 eV lower than the observed values. The present method, although it requires further possible refinements, bridges the gap between the simplicity of the PPP method and the required overall interpretation of the electronic properties.
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  • 121
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    International Journal of Quantum Chemistry 15 (1979), S. 49-56 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The diatomics-in-molecules method is applied to calculate the ground state 1A′ potential energy surface for LiOH. Three different sets of polyatomic basis functions are investigated. An adequate description of the surface is obtained only with the set including both neutral and ionic atomic states.
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  • 122
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    International Journal of Quantum Chemistry 15 (1979), S. 7-14 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A model for the Fermi contact interaction is proposed in which the charge and magnetic moment of the nucleus are uniformly distributed within a sphere of radius r0. This leads to a Schrödinger equation, which is solvable without perturbation theory. In the mathematical limit r0 → 0, the usual Coulomb plus delta function potential is obtained. It is shown that the magnetic perturbation energy goes to zero for a repulsive delta function, to -∞ for an attractive delta function. A projected application is to computation of nuclear spin-spin coupling constants in molecules, particularly HD.
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  • 123
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    International Journal of Quantum Chemistry 15 (1979), S. 57-71 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The minimal number of independent nonzero atomic integrals that occur over arbitrarily oriented basis orbitals of the form R(r) · Ylm(Ω) is theoretically derived. The corresponding method can be easily applied to any point group, including the molecular continuous groups C∞v and D∞h. On the basis of this (theoretical) lower bound, the efficiency of the permutational approach in generating sets of independent integrals is discussed. It is proved that lobe orbitals are always more efficient than the familiar Cartesian Gaussians, in the sense that GLOs provide the shortest integral lists. Moreover, it appears that the new axial GLOs often lead to a number of integrals, which is the theoretical lower bound previously defined. With AGLOs, the numbers of two-electron integrals to be computed, stored, and processed are divided by factors 2.9 (NH3), 4.2 (C5H5), and 3.6 (C6H6) with reference to the corresponding CGTOs calculations. Remembering that in the permutational approach, atomic integrals are directly computed without any four-indice transformation, it appears that its utilization in connection with AGLOs provides one of the most powerful tools for treating symmetrical species.
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  • 124
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    International Journal of Quantum Chemistry 15 (1979), S. 73-81 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The PCILO method was applied to complexes where dispersion energy forms the dominant attractive contribution of the intermolecular interaction energy. With alkane dimers, especially with dimers of higher alkanes (C4H10)2, (C5H12)2, etc., and the ethylene dimer PCILO was successful as to stabilization energy, equilibrium distance, optimal dimer structure, and energy composition. The dispersion energy part is always underestimated, however. With (X2)2 dimers (X = N, F, Cl) PCILO failed, which might be explained by the presence of lone pairs in the subsystems.
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  • 125
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    International Journal of Quantum Chemistry 15 (1979), S. 83-95 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A screened potential model (SPM) is formulated with Slater-type functions to reproduce the density of the electron shells. The orbital exponent for the valence shell is optimized to calibrate the SPM against experimental valence and Rydberg s and p energy levels for the alkali metals (Li, Na, and K) rare gases (He, Ne, Ar, and Kr), second-row atoms, and Cu, Zn, Mg, S, and Ga. The resulting one-electron wave functions are used to calculate the dipole and velocity forms of the oscillator strengths and 〈1/r3〉 for spin-orbit coupling. The excellent agreement with the averaged experimental results suggests that the SPM atomic orbitals are a good starting point for the evaluation of one-electron properties.
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  • 126
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    International Journal of Quantum Chemistry 15 (1979), S. 97-107 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The validity of two models used in comparisons of the UHF and PHF methods in hyperfine structure calculations is investigated for the lowest 2P state of Li. An improved model for the angular splitting of the core orbitals is proposed and shown to give an accurate description of both the UHF and the PHF wave functions.
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  • 127
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    International Journal of Quantum Chemistry 15 (1979), S. 131-131 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 128
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    International Journal of Quantum Chemistry 15 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 129
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    International Journal of Quantum Chemistry 15 (1979), S. 121-129 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The molecular electrostatic potentials computed by the overlap-multipole-expansion procedure (OMTP) are compared to exact electrostatic potentials computed with the same Gaussian basis set, for different molecular species. It is shown that at distances of the molecule larger than 2.2 Å, the OMTP values compared to those of the exact ones are within an error of 0.5 kcal/mol. This error decreases with increasing distance. For distances below this limit the OMTP potentials may be used as a first indication of the trends of the molecule, provided the values to compare are not too close.
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  • 130
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    International Journal of Quantum Chemistry 15 (1979), S. 109-120 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The random-walk method of solving the Schrödinger equation is applied to the 1B1g and 1B2g states of the H4 square with side length 2.4 a.u. The results provide an independent check of the accuracy of prior variational calculations for these states. With node structures for the 1B1g state taken from a variational calculation with a single-zeta basis set and taken in the simplest form meeting symmetry requirements, the calculated energies are lower than the expectation value of the energy for the single-zeta basis set but not as low as the expectation value for an optimized-exponent double-zeta basis set with polarization terms. Comparisons of results give no suggestion of a barrier height lower than ∼120 kcal/mol for passage through the square configuration in the exchange reaction H2 + D2 → 2HD. For the 1B2g state with node structure in the simplest form meeting symmetry requirements the calculated energy is ∼65 kcal/mol lower than the expectation value of the energy for variational calculations with a double-zeta basis set.
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  • 131
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    International Journal of Quantum Chemistry 15 (1979), S. 135-145 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two distinct approaches to the calculation of first-order properties with a limited CI wave function are discussed. One is based on the Hellmann-Feynman theorem and the other on the direct evaluation of the total energy derivative at zero perturbation. Corrections to the Hellmann-Feynman expectation value are given for the CI wave function consisting of a single determinant reference state and all single and double replacements of this. These corrections are the extended Brillouin matrix elements and involve interactions between the zeroth-order wave function and triply substituted configurations. The usefulness of these matrix elements for the generation of MC SCF orbitals and for the calculation of cluster corrections to the wave function is briefly discussed. The formulas for the Brillouin matrix elements expressed in terms of one- and two-electron integrals have been automatically generated using the syntax of the algebraic program SCHOONSCHIP.
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  • 132
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    International Journal of Quantum Chemistry 15 (1979), S. 169-180 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Some expansion and completeness theorems for operator manifolds, which are currently being employed in propagator theory, are derived. It is shown that excitation or ionization operators satisfying the conditions QΛ†|0〉 = |Λ〉 and QΛ|0〉 = 0 for general excited states |Λ〉 and reference state |0〉 may be expanded uniquely in particular sets of basis operators. These results are then used to discuss rigorous expressions for fermion propagators.
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  • 133
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    International Journal of Quantum Chemistry 15 (1979), S. 147-167 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We consider the problem of determining variational, external-field-dependent corrections to nonoptimal zero-field nonlinear parameters. Both a direct analytic perturbation analysis and finite perturbation methods are described in a general way and in detail for the SCF approximation. The abstract theory is illustrated by reference to the results of several explicit calculations. Also, the sensitivity of the results to the choice of zero-field values is discussed.
    Additional Material: 2 Ill.
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  • 134
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    International Journal of Quantum Chemistry 15 (1979), S. 181-196 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The geometric aproximation is used within the framework of triple perturbation theory to evaluate the contributions to nuclear spin-spin coupling constants in the water molecule provided by the Fermi contact, the spin-orbit, and the spin-dipolar interactions. The results, obtained with SCF wave functions expanded over Gaussian basis sets of increasing quality, are compared with corresponding coupled Hartree-Fock estimates. The limits of the geometric approximation to coupling constants are discussed.
    Additional Material: 8 Tab.
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  • 135
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    International Journal of Quantum Chemistry 15 (1979), S. 197-205 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The so-called parametric dependency of the electronic wave function in the Born-Oppenheimer approximation is discussed. Considering a function beyond this approximation, a new set of equations is derived with parametric and nonparametric dependency. Nuclear and electron reduced density matrices are introduced in this derivation. They are used in a formulation of the problem of separation of nuclear and electronic motion.
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  • 136
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    International Journal of Quantum Chemistry 15 (1979), S. 243-257 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The π-electronic structures of the ground state of linear and highly branched polyenes with up to 80 π-electrons are calculated with particular reference to the alternation of the bond orders. The MO methods adopted are HMO, PPP, variable-β, γ, and its improved version. The effect of the electron correlation through singly and doubly excited configurations is estimated with a second-order perturbation calculation. The calculated bond orders systematically vary with the degree of approximation used. Most of the bond order values can be grouped into either a single or double bond region. In certain series of highly branched polyenes the bond orders of double and single bonds at the root of branching, respectively, get smaller and larger as the size of the molecule increases and sometimes their difference gets diminishingly small. The origin of these abnormal bond orders is discussed in terms of the π-electron flow networks.
    Additional Material: 5 Ill.
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  • 137
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    International Journal of Quantum Chemistry 15 (1979), S. 259-259 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 138
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    International Journal of Quantum Chemistry 15 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 139
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    International Journal of Quantum Chemistry 15 (1979), S. 207-242 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We argue that the goal of developing a satisfactory general formalism for the justification of effective π-electron Hamiltonians, as well as for ab initio calculation of their parameters (α, β, and γ), has now been achieved. The need for a fully linked many-body formalism is emphasized; this feature requires a Rayleigh-Schrödinger (RS) type of degenerate perturbation theory. A number of apparently different degenerate RS perturbation formalisms are reviewed. Most of these formalisms are actually identical term-by-term, when their RS expansions are worked out explicitly; the formal relations that prove their complete equivalence are presented and discussed. One of these formalisms, a version developed by the author for related open-shell problems in nuclear physics, is shown to be most convenient for many-body applications. This is owing to the relatively simple and transparent nature of its general algebraic structure, which facilitates partial summation to infinite order. A simple and concise derivation is presented for the algebraic features of this preferred formalism, and its many-body (linked cluster) aspects are briefly discussed. The recent development of a nonperturbative (coupled-cluster) analog of this formalism is also described. Some practical issues are examined, including the choice of orbital basis. Illustrative numerical results are presented, based on the calculations of Iwata and Freed. Several remaining problems are described; these are both qualitative and quantitative in nature, and their resolution will require some detailed calculations.
    Additional Material: 4 Ill.
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  • 140
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    International Journal of Quantum Chemistry 15 (1979), S. 261-270 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A number of Gaussian basis sets for carbon and silicon have been examined in terms of the one-electron properties of methane and silane. The convergence of the properties to their limiting values is not monotonic but, in general, a representation that involves five Gaussian functions per occupied atomic orbital on the heavy atom is sufficient to closely approach the limits. A relationship between the sizes and partitioned electronic energies is shown to hold to a good approximation for the Boys spatially localized molecular orbitals employed in this study.
    Additional Material: 4 Ill.
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  • 141
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    International Journal of Quantum Chemistry 15 (1979), S. 281-291 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A simple model for surface reconstruction is developed utilizing the next-nearest-neighbor approximation within the framework of molecular-orbital theory. Exact energy expressions for this model and various special cases are derived, and they are illustrated by numerical results. The influence of a very weak surface deformation on the energy spectrum of surface states is also discussed.
    Additional Material: 4 Ill.
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  • 142
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    International Journal of Quantum Chemistry 15 (1979), S. 293-309 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Löwdin's correlation potential formalism has been used to define a modified bielectronic potential, allowing one to calculate the exact electronic energy, given the Hartree-Fock wave function. This modified potential is in principle peculiar to each electronic system, and is defined by a correlation factor depending on the interelectronic distance r2. The explicit calculation of the correlation factor has been performed for some two-electron atoms, in the 11S and 23S states, and for the beryllium atom. Examination of the results so obtained leads us to conclude in favor of the nonexistence of a universal modified bielectronic potential.
    Additional Material: 9 Ill.
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  • 143
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    International Journal of Quantum Chemistry 15 (1979), S. 271-280 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper offers a unified presentation of the main ring conformers of the diol expoxides, triol carbonium ions, and tetrols related to the “bay-region” benzo ring of carcinogenic metabolites of PAH and brings forward quantitative information through ab initio SCF computations about their relative energies. It substantiates and evaluates the energy of the syn epoxide-OH4 hydrogen bond and, on the contrary, refutes the significance of an O⃛H—O or an O-⃛H—O bond in the triol carbonium ions. It provides an explanation for the similar rates of acid-catalyzed hydrolysis of the syn and anti diol expoxides. It evaluates the stabilization of the triol carbonium ions due to the presence of a neighboring double bond and accounts for the spontaneous opening of protonated epoxides. Finally it accounts for cis hydrolysis of the syn diol epoxide and trans hydrolysis of the anit diol epoxide under acid conditions.
    Additional Material: 6 Ill.
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  • 144
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    International Journal of Quantum Chemistry 15 (1979), S. 333-341 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A dynamical model describing DNA as superconductant is proposed. The status of superconductivity is described as being represented by a radiation-induced harmonic oscillation of a parcel of π electrons between the reference level and critical temperatures. A set of field equations is used to describe the information exchange process mediated by a coherent wave phenomenon.
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  • 145
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    International Journal of Quantum Chemistry 15 (1979), S. 311-331 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction between two nickel atoms in the configurations (3d)8(4s)2 and (3d)9 (4s)1 has been calculated using ab initio methods (Hartree-Fock and configuration interaction). The results of the calculations compare favorably with the optical spectrum. The discrepancy between the calculated and the experimental dissociation energy is discussed, and a new estimate of the dissociation energy is given. The configuration-interaction calculations show that the interaction between the two nickel atoms is of a very complex nature. In spite of this the binding can be interpreted in a simple way. The bond is minly due to the 4sσg molecular orbital while the 3d orbitals of the two nuclei are exchange coupled.
    Additional Material: 5 Ill.
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  • 146
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    International Journal of Quantum Chemistry 15 (1979), S. 355-358 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Tab.
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  • 147
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    International Journal of Quantum Chemistry 15 (1979), S. 343-353 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Detailed considerations of the ground-state vector derived for the random phase approximation obtained earlier in a generator coordinate representation employing the unitary group parameter space reveal a particular correlated pair structure. The results of explicit calculations of ground-state averages are discussed.
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  • 148
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    International Journal of Quantum Chemistry 15 (1979) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 149
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    International Journal of Quantum Chemistry 15 (1979), S. 359-359 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 150
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    International Journal of Quantum Chemistry 15 (1979), S. 363-368 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A correlation is shown between carcinogenic potency and K-region electrophilic superdelocalizability for a variety of aromatic compounds.
    Additional Material: 1 Ill.
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  • 151
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Configuration-interaction calculations, with an extended basis, are carried out on the ground and lower excited states of O2 and O2+ at and near the equilibrium internuclear distance (R = 2.3 a.u.) of the ground state of O2. Particular attention has been paid to the two lowest 3Σu- states, and the mixing of the valence and Rydberg characters in these states are studied. The lowest 3Σu- state is a Rydberg-type state for R 〈 2.3 a.u., but becomes valence-type for R ≳ 2.3 a.u. The second 3Σu- state, which is 1.6 eV above the lowest 3Σu- at R = 2.3 a.u., changes its character from Rydberg to valence, valence to Rydberg, and then to valence again when R increases from 1.9 to 3.1 a.u. Satisfactory agreement between the calculated and experimental vertical excitation energies is obtained.
    Additional Material: 1 Ill.
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  • 152
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    International Journal of Quantum Chemistry 15 (1979), S. 559-566 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new form of pseudopotential for applicaiton in ab initio molecular calculations is described. A method for determining pseudopotential parameters is suggested and pseudopotential parameters of double-zeta quality are presented for the first row atoms of the periodic table. The pseudopotential is especially well suited for incorporation into the floating-spherical-Gaussian-orbital (FSGO) method, though it is not restricted to any particular method. Applications of the resulting pseudo-FSGO method to BeH2, BH3, CH4, and C2H6 are presented.
    Additional Material: 4 Tab.
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  • 153
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    International Journal of Quantum Chemistry 15 (1979), S. 567-578 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pseudopotential theory is introduced into the ab initio FSGO molecular fragment method. A theoretical background for the pseudopotential fragment description and a method for large molecule formation is presented. Core-valence electron separation is achieved at both levels of the calculations with the resulting simplification of the molecular calculations. Using pseudopotentials of double-zeta quality a detailed description of pseudopotential molecular fragments CH4 (tetrahedral) and CH3 (planar) is presented. Applications of the pseudo-FSGO molecular fragment method to hydrocaroons are discussed. The results are compared to those of the original FSGO method and experiment.
    Additional Material: 4 Ill.
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  • 154
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    International Journal of Quantum Chemistry 15 (1979), S. 589-600 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The utility of modifying the virtual orbitals of the Fock operator by introducition of an additional potential is discussed. A particularly convenient form for computational implementations is obtained, and improved methods for the practical solution of the secular problem are recommended.
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  • 155
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    International Journal of Quantum Chemistry 15 (1979), S. 601-610 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Perturbation theory in the vicinity of an RHF closed-shell instability threshold is developed. Equations determining the appearance of new solutions are formulated solely in terms of the electron interaction operator.
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  • 156
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    International Journal of Quantum Chemistry 15 (1979), S. 611-643 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A definition is given for the spin-tensorial components of a p-electron density matrix for arbitrary p. Certain of these are defined to be standard components, and it is shown that all others can be obtained from them by linear combinations of permutations. When the density matrix is reduced, the standard components either map into standard components of the fewer-electron density matrix or into the origin. One- and two-electron density matrices are treated in greater detail. Reducing bases are given for the spaces in which the spatial coefficients of the spin components are elements. For spin eigenstates traces of all components are determined, and the π = 1 parts of all components are determined in terms of two independent components, which are themselves determined by the two-electron charge density matrix. Geometric consequences are investigated.
    Additional Material: 15 Tab.
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  • 157
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    International Journal of Quantum Chemistry 15 (1979), S. 645-653 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method is described whereby molecular symmetry is employed to reduce the number of two-electron integrals in perturbed Hartree-Fock calculations of second-order properties. The method is a generalization of the Dacre-Elder procedure. First- and second-rank perturbing tensor operators are examined in the coupled HF approach to electric dipole polarizabilities, magnetic susceptibilities, quadrupole polarizabilities, and spin-dopolar contributions to spin-spin coupling constants. The procedure sketched here permits a large saving of computer efforts, which is shown by some illustrative examples.
    Additional Material: 2 Tab.
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  • 158
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    International Journal of Quantum Chemistry 15 (1979), S. 655-662 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ground and vertical valence ionized states of allene and butatriene have been studied in the ab initio valence bond framework using the 6-31G basis set after contraction and introducing the core-valence shell separation. The final wave functions have been analyzed in terms of VB structures by means of population analysis.
    Additional Material: 1 Ill.
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  • 159
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    International Journal of Quantum Chemistry 16 (1979), S. 71-77 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The intermolecular electronic correlation contributions to the Coulomb component of the nucleic acid base interaction energy are estimated. The Coulomb energy is evaluated with the use of atomic monopoles, which are determined from the π-electronic densities calculated by the SCF method and by employing partially or completely optimized APSG wave functions. When the correlation is thus taken into account, a systematic decrease in atomic charges occurs; this effect is considerable only if an optimized orbital set is used. As a result, the Coulomb interaction energy due to the π-electronic atoms decreases from -1.13 to -0.85 kcal/mol for the AT pair and from -7.15 to -4.61 kcal/mol for the GC pair.
    Additional Material: 3 Ill.
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  • 160
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: High resolution natural abundance carbon-13 NMR has been used previously to examine molecular motions and conformational transitions in the muscle calcium binding parvalbumins isolated from mirror carp. [S. J. Opella, D. J. Nelson, and O. Jardetzky, J. Chem. Phys. 64, 2533 (1976) and D. J. Nelson, S. J. Opella, and O. Jardetzky, Biochemistry 15, 5552 (1976).] The carbon-13 NMR spectrum of parvalbumin typically reveals the presence of a number of well-resolved resonances from single-carbon sites in the protein. Since accurate assignment of these resonances to specific carbon atoms in the protein is essential before these resonances can be employed as probes of local conformational events, an investigation of the origin of a number of single-carbon resonances has been performed. Carbon-13 NMR on Tb(III)- and Yb(III)-substituted parvalbumin is the principal spectroscopic technique employed; however, results from terbium fluorescence spectroscopy, γ-ray scintillation spectroscopy, and x-ray difference Fourier analysis all contribute to single-carbon site assignment. The principal conclusions drawn from the combined spectroscopic results are that: (1) the downfield carboxyl resonance at 184.6 ppm, previously attributed to Glu-81, whose carboxyl group is involved in an internal ionic bond, originates rather from a carboxyl function coordinating the solvent exposed metal ion, (2) the carbonyl resonance at 168.9 ppm arises from Lys-96, as was previously suggested; and (3) the 11.2 ppm resonance derives from the δ-methyl carbon of Ile-97, a resonance assignment that could not be made previously.
    Additional Material: 9 Ill.
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  • 161
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    International Journal of Quantum Chemistry 16 (1979), S. 467-484 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Detailed quantum-chemical calculations by means of semiempirical all-valence electrons methods and a generalized (multivariable) rank correlation analysis are the fundamentals of a novel strategy of search for QSAR within homologous series of compounds. The set of molecular parameters (describing the electronic and conformational properties as well as potential interactions of the drugs) is calculated theoretically. Owing to the rank correlation method, no linear model (like LFER) for the dependence of the biological activity upon the molecular parameters is presumed. The computed correlation coefficients are valued by carefully determined levels of statistical significance. Significant correlations are used to predict unknown activities in terms of ranks relative to the basic sample.
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  • 162
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    International Journal of Quantum Chemistry 16 (1979), S. 501-507 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper proposes a method for the generalization of the second quantization operators. The method is based on two main hypotheses: (i) the same form of the correlation operator, which is good for closed-shell systems is chosen and (ii) a system of equations is given to calculate the differences (xk0-xk1), which characterize both attachment and detachment operators.
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  • 163
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    International Journal of Quantum Chemistry 16 (1979), S. 543-555 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Aromatic polynuclear p-quinones and their derivatives have been studied using their electronic absorption and luminescence spectra and their basicity. The data were used to provide a basis for the study of the relationships between the structure and the spectral characteristics.
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    International Journal of Quantum Chemistry 16 (1979), S. 739-743 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown in the present work that a protein globule can mediate the donor-to-acceptor electron transport, when the protein is in the solution or incorporated into the membrane.
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  • 165
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    International Journal of Quantum Chemistry 16 (1979), S. 707-737 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A quantitative conformational theory of proteins is developed that enables one to predict the native structure of a protein from its amino acid sequence. The theory is based on the following principles: (1) the spatial structure and conformational properties of a protein are predetermined by its amino acid sequence; (2) the native conformation of a protein corresponds to the free energy minimum; (3) all interactions within a protein molecule are specified as short-, mediumy-, and long-range types, interactions of different types being consistent with each other. The role of the short-, medium-, and long-range interactions in the spatial organization of a protein globule is discussed, and a step-by-step analysis of amino acid sequences with gradually increasing lengths is presented. The proposed theory is based on a semiempirical computational method that involves quantitative evaluation of all pairwise atomic interactions within a protein molecule in an aqueous medium. Examples illustrating the suggested approach are presented.
    Additional Material: 11 Ill.
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  • 166
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    International Journal of Quantum Chemistry 16 (1979), S. 745-752 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using the Bogolyubov's rate equation from the theory of superfluidity the possibility of Bose condensation of phonons in biological systems and the validity of Fröhlich's hypothesis has been proved. We took into account both the third and the fourth anharmonism in the rate equation. All the processes with active phonons (from one to four) of biological active modes have been investigated. Taking into account these processes the expression for the chemical potential is shown to be changed, but the conditions for Bose condensation of phonons still exist. For the first time we point out the possibility of soliton wave packet propagation in the coherent systems of phonons and photons. The possibility of Bose condensation of excitons in biological systems is also discussed.
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  • 167
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    International Journal of Quantum Chemistry 16 (1979), S. 753-760 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Specimens of amorphous zirconium phosphates specifically formed by alkali metal cations were first studied as models of biological membranes. The mechanism of ion motion in zirconium phosphate ultrapores was investigated by the SCF MO LCAO method using a CNDO/2 approximation. Differently arranged dihydrophosphate groups were considered as models of the sorbent channel surface. Analysis of the form of potential surfaces resulting from the motion of lithium, sodium, and potassium ions near the charged centers showed that the value and position of energy barriers essentially depend on the nature of cation and the size of the pore that it penetrated into. Optimum conditions for the selectivity absorption of the ions and their further advance along the ultrapore channel are created if the cation size corresponds to the ultrapore diameter.
    Additional Material: 7 Ill.
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  • 168
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    International Journal of Quantum Chemistry 16 (1979), S. 761-767 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The wave functions of donor-acceptor pairs before and after electron transfer are written as a product of the electron-vibrational wave functions of the donor and acceptor with allowance for the change in the number of electrons on these particles by one after transition. In this approximation, the energy of the initial state is represented as a sum of the electron-vibrational levels of the donor and acceptor and that of the final state as a sum of donor cation and acceptor anion levels. Formulas for the electron transfer probability of symmetrical and nonsymmetrical donor-acceptor pairs have been derived that express the dependence of this process on the ionization potential difference of the donor and the electron affinity of the acceptor, on the vibrational frequencies of these particles, and on temperature.
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  • 169
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using a spectrokinetic approach the absorption spectra of the short-lived transient products in the enzymatic reaction of the glutamate decarboxylase with natural substrate are determined for the first time. The quantum-chemical calculations of the electronic structure and spectra of various ionic species of numerous vitamin B6 derivatives allowed a hypothesis on the nature of the intermediate products detected to be suggested. A model of the enzyme functioning taking into account the charge equilibria and some electronic-conformational relations is proposed.
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  • 170
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    International Journal of Quantum Chemistry 16 (1979), S. 777-789 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electron-configuration interaction is one of the most general physicochemical approaches used to explain an enzymes functioning. Studying enzymatic reactions requires investigation of the motions of nuclei on a certain PES. In order to obtain the shape of the PES numerous calculations of the total energy of the enzyme-substrate complex were calculated, and are presented in this paper.
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  • 171
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    International Journal of Quantum Chemistry 16 (1979), S. 791-797 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper calculates the interfragment interactions in peptide molecules by taking into account the barriers to internal rotation.
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  • 172
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    International Journal of Quantum Chemistry 16 (1979), S. 809-817 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The primary step in the bleaching sequence of visual pigments has been shown to occur in picoseconds, while the isomerization of model visual pigment chromophores, protonated 11-cis retinylidene Schiff bases, takes place on a time scale several orders of magnitude slower. Thus, the well-accepted notion that the primary step in visual transduction involves a simple isomerization deserves closer examination. Studies of visual pigments and compounds which mimic visual pigment chromophores are discussed in terms of several alternatives for the nature of the primary step. In addition to discussion of photochemical studies, spectroscopic experiments are discussed. To fundamentally understand the nature of the primary processes in visual transduction it is important to understand the photochemistry, and therefore the electronic structure, of pigment chromophores. Spectroscopic studies aimed at elucidating the electronic structure of polyenic systems are thus discussed.
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  • 173
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    International Journal of Quantum Chemistry 16 (1979), S. 799-808 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The method of the modeling of the radial distribution function for liquid and amorphous polymers is described. The method consists in the use of pair functions of the radial distribution (ideal peaks) for the construction of the distribution function of intramolecular distances and the comparison of the theoretical function with the experimental one. The theoretical functions for two possible conformations of the poly(tetramethylene glycol) macromolecule were computed. It follows from comparison of the computed theoretical functions with the experimental one that the intramolecular distances do not become apparent in the experimental curve. The differential functions containing the contributions of the intermolecular distances only were obtained by subtraction of the theoretical function from the experimental. Comparison of the differential functions of the two conformational states which were taken as models proved that there are large numbers of gauche conformations in the liquid polymer in contrast to the crystalline polymer. On the basis of the analysis of the differential functions for liquid and crystalline poly(tetramethylene glycol), we concluded that the short-range order of the polymer is distorted during the melting in that the basic plane of the poly(tetramethylene glycol) paracrystal becomes almost hexagonal.
    Additional Material: 5 Ill.
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  • 174
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: New “reference” circular dichroism spectra of α helix, β-structure (both parallel and antiparallel), β-bends, and the unordered form are obtained from circular dichroism spectra and x-ray data for six proteins (myoglobin, lysozyme, lactate dehydrogenase, papain, ribonuclease, and subtilisin BPN′). Circular dichroism spectra for α-helix and antiparallel β-structure are similar to those for poly(Llysine). The circular dichroism spectrum of the parallel β-structure is qualitatively similar to that theoretically calculated by Madison and Schellman. The circular dichroism spectrum of β-bends is qualitatively similar to that theoretically calculated by Woody. The spectrum of the unordered form is close to that of the denaturated proteins. These “reference” circular dichroism spectra used for the analysis of the secondary structure of ten globular proteins (besides the six reference proteins D-glyceraldehyde 3-phosphate dehydrogenase, concanavalin A, cytochrome c, and insulin).
    Additional Material: 1 Ill.
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  • 175
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum-chemical calculation of the energies of the electronic transitions and the electronic structures of the neutral and ionic species of the nucleic acids components in their ground and lower excited singlet and triplet ππ* and nπ* states has been carried out in the all-valence-electron approximation CNDO/S. The results of the calculation allow one to identify the most photoreactive sites of the molecules and to consider the dependence of the location of these sites on the ionic state of the molecules. The calculated data are compared with our previous results obtained in a π-electron approximation. The individual absorption spectra of various ionic and tautomeric species of the nucleic acids components obtained by us earlier have been decomposed into bands corresponding to separate electronic transitions. As a rule, there is a good agreement between the calculated data in the two approximations and the experimental results.
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  • 176
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    International Journal of Quantum Chemistry 16 (1979), S. 863-868 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Atom-atom potential functions for calculation of nonbonded interaction energies of nucleic acids are proposed. Quantitative reliability of the obtained results is checked by using the calculations of intermolecular interaction energy in crystals. Based on the calculations of the interaction energy of the nucleic acid bases the molecular mechanisms of spontaneous mutations are suggested.
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  • 177
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    International Journal of Quantum Chemistry 16 (1979), S. 869-875 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The method of correlation functions used in the theory of liquids is suggested for investigation of the solvation shell structure in the vicinity of nonpolar surfaces. An approach making it possible to obtain the molecule correlation functions in the solvation shell is worked out. In this approach the correlation functions are the product of the interatomic correlation functions.
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  • 178
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    International Journal of Quantum Chemistry 16 (1979), S. 847-855 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The investigation of the factors determining the formation and stability of the higher biopolymers structures is one of the most important trends of the development of molecular biophysics. A feature common to most macromolecular systems under physiological conditions is that they function in an aqueous environment. Thus, it is natural to assume that the peculiarities of biological macromolecules structures and their functional activity as well are closely related to the specific properties of such a unique solvent as water. The investigations of the conformational changes of biopolymer, induced by dehydration of the macromolecule, give information about the nature of the forces stabilizing its structure. The dehydration of the macromolecule in solution can be attained by addition of a nonaqueous cosolvent. Generally low-molecular-weight aliphatic alcohols, amides, and amines are used as a nonaqueous component. At present a vast number of experimental and theoretical data concerning the properties of water and aqueous systems are available. The specificity of water as a solvent arises primarily from the spatial hydrogen-bonded structure. The addition of a nonaqueous component exerts changes in this structure, which evolve to the singularities of the physical characteristics of water-nonelectrolyte mixtures. It is generally assumed that nonelectrolytes may be divided, according to their effect on the spatial water structure, largely into two basic classes: (1) the structure makers, i.e., the compounds of aliphatic alcohols type; (2) the structure breakers, i.e., the compounds of urea type. The agents belonging to the first class show a stabilizing effect in the range of low nonelectrolyte content. At a certain critical concentration, Ccrit, characteristic of each substance, the nonaqueous solute molecules leave the cavities of the spatial water structure which leads to a disruption of the latter. The agents belonging to the second class exert a structure-breaking effect even in the range of extremely low concentrations, which arises from their high competitive ability for hydrogen bonding.
    Additional Material: 7 Ill.
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  • 179
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    International Journal of Quantum Chemistry 16 (1979), S. 1069-1101 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A novel approach is developed for optimizing molecular orbitals within the context of a multiconfiguration self-consistent-field problem. The MCSCF wave function is determined through a sequence of eigenvalue problems in the multiconfiguration space and the single-excitation space. They are used to iteratively improve the natural orbitals, which in turn are related, by successively improved transformations, to the MCSCF orbitals. The mathematical problems arising out of this general concept are solved and the computational implementation is discussed. In many applications the method has proven itself as a powerful approach in forcing rapid convergence. Adaptation to spin and spatial symmetry is maintained throughout and the procedure is applicable to excited states as well as to ground states.
    Additional Material: 3 Ill.
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  • 180
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    International Journal of Quantum Chemistry 16 (1979), S. 1103-1139 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The direct dissociation of ethylene into two methylenes is studied along the least motion reaction path by means of an ab initio multiconfiguration self-consistent-field (MCSCF) calculation. All eight configurations arising from those valence orbitals that form the CC bonds, seven of them singlet coupled and one triplet coupled, are taken into account. The HCH bond angle is optimized along the entire reaction path. Separate MCSCF optimizations are carried through for the lowest two states of 1Ag symmetry. The (1Agσ2π2) ethylene ground state dissociates into two (3B1σπ) ground-state methylenes. The (1Agσ2π*2) excited state of ethylene dissociates into two (1A1σ2) excited methylenes. It is established that both these dissociations proceed without any barrier in the energy curve. In the ground state, where orbital symmetry is conserved, the π-bond breaks before the σ-bond, and the calculated heat of reaction agrees within 6 kcal/mol with the experimental value. In the excited state, where orbital symmetry is not conserved, the nonbonded repulsion between methylene σ2 lone pairs is found to blend into the antibonding character of the excited ethylene, yielding an energy curve that is everywhere repulsive. However, the variation of the HCH angle during the dissociation process is not simple, initially it expands and subsequently it contracts. Quantitative analytical approaches are developed which furnish conceptual interpretations of the orbital changes and configurational changes along the reaction path.
    Additional Material: 13 Ill.
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  • 181
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    International Journal of Quantum Chemistry 16 (1979), S. 1149-1150 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Tab.
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  • 182
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    International Journal of Quantum Chemistry 16 (1979), S. 1151-1155 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 3 Ill.
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  • 183
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    International Journal of Quantum Chemistry 16 (1979), S. 1239-1247 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: On a calculé des polarisabilités multipolaires dépendantes de la fréquence pour la série de He à partir d'un modèle hydrodynamique de la mécanique quantique dans le cadre d'un Hamiltonien de particules indépendantes. Notre méthode est équivalente à l'approximation de Hartree-Fock noncouplée, ce qui veut dire, que nos valeurs des polarisabilités, des énergies de transition et des coefficients pour les forces de dispersion sont comparables aux résultats précédents obtenus par cette approximation.
    Abstract: Frequenzabhängige Multipolpolarisierbarkeiten für die He-Folge sind mittels eines hydrodynamischen Modells der Quantenmechanik im Rahmen eines Hamiltonoperators für unabhängige Teilchen berechnet worden. Unser Verfahren ist der ungekoppelten Hartree-Fock-Näherung äquivalent und deswegen sind unsere Werte für die Polarisierbarkeiten, die Übergangsenergien und die Dispersionskraftkoeffizienten mit früheren Ergebnissen dieser Näherung vergleichbar.
    Notes: Frequency-dependent multipole polarizabilities of the He sequence have been calculated from a hydrodynamic model of quantum mechanics and using an independent-particle model Hamiltonian. Our present scheme is parallel to the uncoupled Hartree-Fock approximation so our values of polarizabilities, multipole transition energies and dispersion force coefficients between the He—He pair are comparable with earlier works using the uncoupled Hartree-Fock approximation.
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  • 184
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    International Journal of Quantum Chemistry 16 (1979), S. 1209-1237 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Le formalisme des fonctions de Green de polarisation dans la notation utilisant les superopérateurs de Goscinski et Lukman a été réétabli avec un état de référence MC-SCF pour obtenir le métrique des superopérateurs. Les avantages potentiels de cet état de référence plus général ainsi que certains points faibles inhérents associés aux états de référence utilisés traditionnellement dans les théories de perturbation Hartree-Fock ou Rayleigh-Schrödinger sont discutés brièvement. L'hermiticité des superopérateurs est analysée dans le cadre des états de référence MC-SCF. Utilisant une notion d'ordre propre à cet état de référence on présente des formules explicites et des procédés de calcul pour la réalisation de cette théorie des fonctions de Green, qui sont spécialisés pour inclure des termes consistants jusqu'au second ordre.
    Abstract: Der Formalismus für Green'sche Funktionen von Polarisierungstyp in der Superoperatorbezeichnung von Goscinski und Lukman wird mittels eines MC-SCF-Referenzzustands hergeleitet. Die möglichen Vorteile mit diesem allgemeineren Referenzzustand und gewisse mit den in den traditionellen Hartree-Fock- oder Rayleigh-Schrödinger-Störungstheorien verwendeten Referenzzuständen verbundene eigene Schwächen werden kurz diskutiert. Die Hermitizität der Superoperatoren wird im Rahmen des MC-SCF-Referenzzustands analysiert. Mittels eines für diesen Referenzzustand geeigneten Ordnungsbegriffs werden explizite Formeln und Rechnungsverfahren für die Implementierung dieser Theorie von Green'schen Funktionen vorgelegt und spezialisiert um Glieder bis zur zweiten Ordnung einzuschliessen.
    Notes: The polarization Green's-function formalism in the superoperator notation of Goscinski and Lukman is re-derived using a multiconfiguration self-consistent-field (MC-SCF) reference state to establish the superoperator metric. The potential advantages of employing this more general reference state in Green's-function theories and certain inherent weaknesses associated with the traditional Hartree-Fock or Rayleigh-Schrödinger perturbation theory reference state choices are briefly discussed. The Hermiticity of the superoperators is analyzed within the framework of the MC-SCF reference state. Using a concept of order appropriate for this reference state choice, explicit formulas and computational procedures for the implementation of this Green's-function theory are presented and specialized to include terms consistent through second order.
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  • 185
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    International Journal of Quantum Chemistry 16 (1979), S. 1301-1305 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Nous étudions l'influence de la composition du développement en ondes partielles dans les calculs de type MSXα sur les énergies de liaison et les énergies orbitalaires pour N2, O2, et F2.
    Abstract: Wir untersuchen wie die Zusammensetzung der Partialwellenentwicklung in MSXα-Berechnungen Total- und Orbitalenergien für N2, O2, und F2 beeinflusst.
    Notes: We explore how the composition of the partial wave expansion in MSXα calculations affects the binding energies and orbital energies for N2, O2, and F2.
    Additional Material: 3 Ill.
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  • 186
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    International Journal of Quantum Chemistry 16 (1979), S. 1279-1299 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: On propose une nouvelle méthode pour calculer des orbitales cristallines dans l'approximation de Hartree-Fock-Slater. Dans cette méthode on utilise des valeurs expérimentales (rayons x) pour la densité de déformation et des intégrales transmissibles pour traiter les potentiels des atomes neutres. Des méthodes pour calculer les éléments de matrice de ceux-ci sont discutées en détail et à ce propos on présente des développements d'orbitales de type de Slater déplacées en termes de fonctions de Bessel sphériques modifiées et des polynǒmes de Legendre. Des tables d'intégrales transmissibles (moments des potentiels des atomes neutres) sont données pour tous les éléments jusqu'à Z = 36, ainsi que des tables pour les transformées de Fourier des potentiels des atomes neutres.
    Abstract: Eine neue Methode für Kristallorbitalberechnungen in der Hartree-Fock-Slater-Näherung wird vorgeschlagen. In dieser Methode werden Röntgenkristallographische Messungen für die Deformationsdichte, und übertragbare Integrale für die Potentiale der neutralen Atome benutzt. Methoden für die Berechnung der Matrixelemente der Neutralatompotentiale werden sorgfällig diskutiert, und in diesem Zusammenhang werden Entwicklungen von verschiebenen Slater-Typ-Orbitalen in modifizierten sphärischen Besselfunktionen und Legendre-polynomen präsentiert. Tabellen von übertragbaren Integralen (Momenten der Neutralatompotentiale) werden für alle Elemente bis Z = 36 gegeben zusammen mit Tabellen von Fouriertransformen der Neutralatompotentiale.
    Notes: A new method for calculating crystal orbitals in the Hartree-Fock-Slater approximation is proposed. The method makes use of x-ray crystallographic measurements of the deformation density, and uses transferable integrals to treat the neutral-atom potentials. Methods for evaluating matrix elements of neutral-atom potentials are discussed in detail, and in this connection, expansions of displaced Slater-type orbitals in terms of modified spherical Bessel functions and Legendre polynomials are presented. Tables of transferable integrals (moments of the neutral-atom potentials) are given for all the elements up to Z = 36, and tables of Fourier transforms of the neutral-atom potentials are also presented.
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    International Journal of Quantum Chemistry 16 (1979), S. 1249-1263 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Le problème de la diffusion colinéaire d'un atome par une molécule diatomique homonucléaire est formulé comme une équation différentielle matricielle non-linéaire du premier ordre pour le coefficient de réflexion variable. Quand l'Hamiltonien de la cible est invariant sous une transformation de parité, seulement des transitions entre des états pairs ou impairs sont possibles. Cette règle de sélection réduit le nombre de canaux ouverts ou fermés qui contribuent aux coefficients de réflexion et de transmission. Les conditions du problème permettent d'approximer l'Hamiltonien de la cible par celui d'un oscillateur harmonique déplacé. Dans cette approximation la symétrie de réflexion de l'Hamiltonien n'est pas conservée et des transitions entre des niveaux arbitraires sont possibles. Pour simplifier le problème encore plus, on admet que l'interaction entre le projectile et la cible est une somme de deux termes Gaussiens. Pour cette combinaison-ci l'interaction multi-canal peut ětre exprimiée dans une forme analytique finie. Des probabilités de transition sont obtenues pour la collision He—H2, par la solution de l'équation différentielle matricielle, obtenue d'une représentation du potentiel de Lennard-Jones par une somme de deux potentiels Gaussiens. Les résultats numériques sont comparés à ceux obtenus par Secrest-Johnson et Clark-Dickinson.
    Abstract: Die kolineare Streuung eines Atoms von einem homonuklearen zweiatomigen Molekül wird als eine nichtlineare Matrixdifferentialgleichung erster Ordnung für den variablen Reflexionskoefficient formuliert. Wenn der Hamiltonoperator für das Ziel unter Paritätstransformationen invariant ist, sind nur Übergänge zwischen geraden oder ungeraden Zuständen möglich. Diese Auswahlsregel reduziert die Anzahl von offenen oder abgeschlossenen Kanälen, die zu den Reflexions- oder Transmissionskoeffizienten beitragen. Die Bedingungen des Problems erlauben dass der Hamiltonoperator des Ziels mit dem eines verschiebenen harmonischen Oszillators angenähert wird. In dieser Näherung wird die Reflexionssymmetrie des Hamiltonoperators nicht beibehalten und Übergänge zwischen willkürlichen Niveaus sind daher möglich. Um das Problem weiter zu vereinfachen wird die Wechselwirkung zwischen Projektil und Ziel als eine Summe von zwei Gauss'schen Gliedern angenähert. Für diese Kombination der Potentiale kan die Multi-Kanal-Wechselwirkung analytischückt werdn. Durch Anpassung des Lennard-Jones'schen Potentials zu einer Summe von zwei Gauss'schen Potentialen und Lösung der Matrixdifferentialgleichung sind Übergangswahrscheinlichkeiten für die Kollison He—H2 erhalten worden. Die numerischen Ergebnisse werden mit denen von Secrest-Johnson und Clark-Dickinson verglichen.
    Notes: The problem of collinear scattering of an atom from a homonuclear diatomic molecule is formulated in terms of a first-order nonlinear matrix differential equation for the variable coefficient of reflection. For a homonuclear molecule when the target Hamiltonian is invariant under the parity transformation, only transitions between even states or odd states are possible. This selection rule reduces the number of open or closed channels that contribute to the reflection and transmission coefficients. But for numerical calculation, under the conditions of the problem, one can approximate the target Hamiltonian by the Hamiltonian of a displaced harmonic oscillator. In this approximation, the reflectional symmetry of the Hamiltonian is not preserved and transitions between any two levels of the target are possible. To simplify the problem further, the interaction between the projectile and the target is assumed to be a sum of two Gaussian terms. For this combination of the potentials the many-channel interaction can be expressed analytically. By fitting the Lennard-Jones potential with a sum of two Gaussian potentials and solving the matrix differential equation, transition probabilities are obtained for the He—H2 collision. The numerical results are compared with the results found by Secrest and Johnson, and by Clark and Dickinson.
    Additional Material: 4 Tab.
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  • 188
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    International Journal of Quantum Chemistry 16 (1979), S. 1307-1319 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Il est démontré que les éléments de matrice des générateurs du groupe unitaire par rapport à des états antisymétriques et adaptés au spin sont proportionnels aux éléments de matrice du spin de certaines permutations, dites de “line-up.” Le facteur de proportionalité est donné explicitement comme une fonction simple des nombres d'occupation orbitalaires. Les permutations “line up” sont données a priori, si la théorie est basée sur des produits d'orbitales ordonnés. Les formules finales ont une structure très simple, ce qui découle directement du fait que les fontions de spin ont été choisies de façon à ětre géminalement antisymétriques.
    Abstract: Es wird gezeigt, dass die Matrixelemente der Generatoren der unitären Gruppe zwischen spinangepassten antisymmetrischen Zuständen den Spinmatrixelementen gewisser so-genannten “line-up”-Permutationen proportional sind. Der Proportionalitätsfaktor wird explizit als eine einfache Funktion der orbitalen Besetzungszahlen gegeben. Die “line-up”-Permutationen werden a priori gegeben, wenn die Theorie auf geordnete Orbitalprodukte basiert. Die endgültigen Formeln haben eine sehr einfache Struktur, was eine direkte Folge der Tat sache ist, dass die Spinfunktionen als geminal-antisymmetrisch gewählt worden sind.
    Notes: Matrix elements of unitary group generators between spin-adapted antisymmetric states are shown to be proportional to spin matrix elements of so-called “line-up” permutations. The proportionality factor is given explicitly as a simple function of the orbital occupation numbers. If one bases the theory on ordered orbital products, the line-up permutations are given a priori. The final formulas have a very simple structure; this is a direct consequence of the fact that the spin functions have been taken to be geminally antisymmetric.
    Additional Material: 1 Tab.
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  • 189
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    International Journal of Quantum Chemistry 13 (1978), S. 455-456 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 190
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    International Journal of Quantum Chemistry 13 (1978), S. 499-507 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The thermodynamics of the DNA helix-coil transition is studied, starting from the thermodynamical potential difference between the states helix and coil; this potential difference is understood as the difference in free energies. With only three parameters obtained from experimental data different quantities of the T2 phage DNA molecule are calculated. It is observed that the phase transition is of second order.
    Additional Material: 5 Ill.
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  • 191
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    International Journal of Quantum Chemistry 13 (1978), S. 801-810 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown how an idempotent density matrix provides a proper model for interpretation of the x-ray coherent diffraction experiment.
    Additional Material: 3 Ill.
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  • 192
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    International Journal of Quantum Chemistry 14 (1978), S. 39-53 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio LCAO-MO-SCF calculations on SiH2 and PH2 and their positive and negative ions are reported, using a variety of Gaussian basis sets. The charge distribution, bonding, and molecular properties of these ions are compared with the available experimental data.
    Additional Material: 7 Tab.
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  • 193
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    International Journal of Quantum Chemistry 13 (1978), S. 199-206 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that application of the orthonormality-constrained variation method to the absolute squares of three kinds of overlap integrals leads to eigenvalue equations and of which the eigenvectors belonging to maximum (minimum) eigenvalues are the maximum (minimum) overlap, localized, and hybrid orbitals. In the eigenvalue equations, coupling operators similar to those used in SCF theory are found to occur. Connection of the maximum orbitals to a many-shell model, a simple MO theory, and Löwdin's orthonormalization is also discussed.
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  • 194
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    International Journal of Quantum Chemistry 13 (1978), S. 235-238 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electric polarizabilities are calculated by solving the first- and second-order perturbation equations through a variational procedure. Satisfactory numerical results are obtained for a number of molecules using the CNDO approximation with an extended basis set.
    Additional Material: 2 Tab.
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  • 195
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    International Journal of Quantum Chemistry 13 (1978), S. 263-263 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 196
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    International Journal of Quantum Chemistry 13 (1978), S. 311-324 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The topological properties of real spherical harmonic representations on the unit sphere have been found to provide a convenient tool to infer the lobe edifices which mimic these orbitals. The prohibitive number of lobes required in such an approach for l 〉 2, can be avoided in using only axial Gaussian-lobe orbitals (AGLO). It is proved that 2l + 1 independent Ylo-like functions correctly span the relevant Ylm (m = -l,l) subspace. The multipolar component analysis of any spatial arrangement of lobes is derived, and allows the optimization of the angular dependence of AGLOS. The cases of d- and f-orbitals are studied in detail and accurate optimized functions are proposed. This method can be easily extended to obtain the atomic orbitals of any azimuthal quantum number l-subspace.
    Additional Material: 2 Ill.
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  • 197
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    International Journal of Quantum Chemistry 13 (1978), S. 367-374 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The multiple scattering molecular orbital method, with different choices of sphere radii and local exchange, is applied to the cluster CrF63-. The orbital energies are almost always in the same order but uniformly moved up or down the energy scale depending on which parameters are used. Charge densities are only slightly dependent on the parameters. A method to avoid interaction with Rydberg-like states is suggested.
    Additional Material: 1 Ill.
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  • 198
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    International Journal of Quantum Chemistry 14 (1978), S. 353-359 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We review the methods and some applications of complex scaling transformation as well as some goals that now seem accessible using this technique in atomic and molecular physics.
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  • 199
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    International Journal of Quantum Chemistry 13 (1978), S. 1-16 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using an STO-3G basis set, energy localized molecular orbitals (LMO) were determined for the ten electron series HF, H2O, NH3, and CH4 as well as for CH3OH and C2H2F2. The method of conjugate gradients is shown to be a viable alternative to other non-eigenvalue methods. The characterization of the LMO in terms of first and second moment measures indicates that the STO-3G basis set LMO may be accurately correlated to larger sp basis set LMO. Also, it is shown that the first and second moment measures display a good linear correlation with the classical concept of electronegativity.
    Additional Material: 8 Ill.
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  • 200
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    International Journal of Quantum Chemistry 13 (1978), S. 41-65 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Various forms of the unrestricted Hartree-Fock (UHF) scheme are studied for a simple three-electron model system, represented by the PPP (Pariser-Parr-Pople) π-electron model of the allyl radical. Both spin and space symmetry are violated in the UHF trial wave function, either individually or simultaneously. A comparison with the projected Hartree-Fock (PHF) schemes studied earlier is made and the effect of the order in which various symmetries are broken in both UHF and PHF schemes is studied. The effectiveness of various schemes follows from a comparison of the correlation energy and the wave function is obtained by various UHF (or projected UHF) and PHF schemes, in the whole range of the coupling constant, with the corresponding quantities given by the exact solution of the model. Finally, the implications of the stability of the restricted HF solutions for the behavior of various single- and multiparameter UHF and PHF schemes are briefly outlined and exemplified on the studied model.
    Additional Material: 11 Ill.
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