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  • 1985-1989  (2,265)
  • Computational Chemistry and Molecular Modeling  (1,638)
  • Physical Chemistry  (627)
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  • 201
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 425-427 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Distribution between pentane and trifluoromethanesulfonic acid (TFMSA) and carbon-13 NMR measurements showed that benzene and toluene are not protonated to any significant extent in TFMSA. This finding contradicts previous reports, and validates the ranking of superacids based on the extent of benzene protonation.
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  • 202
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A two-hydron transfer mechanism involving hydron transfers from carbon to nitrogen and from nitrogen to carbon was studied. The rearrangement of 1,3,3-triphenylpropene (1) into 1,1,3-triphenylpropene (2) catalyzed by 2,10-diazabicyclo[4.4.0]dec-1-ene (3) in benzene at 25·00°C was studied by 2H-labeling experiments and kinetic 2H-isotope effects. The synthesis and purification of [6,10-2H2]-2,10-diazabicyclo[4.4.0]dec-1-ene ([6,10-2H2]-3), [3-2H]-1,3,3-triphenylpropene ([3-2H]-1), [3-2H]-1,1,3-triphenylpropene ([3-2H]-2) and [3,3-2H2]-1,1,3-triphenylpropene ([3,3-2H2]-2) together with their precursors are reported. Partial reaction of [3-2H]-1 with [6,10-1H2]-3 gave 42% conversion into product 2, which was shown by 1H NMR to be composed of 88% [3-1H]-2 and 12% [3-2H]-2. Partial reaction of [3-1H]-1 with [6,10-2H2]-3 gave 43% of 2, composed of 73% [3-1H]-2 and 27% [3-2H]-2.These results clearly show that a substantial fraction of the reaction takes place in a bifunctional manner but isotope exchange and/or monofunctionally catalyzed reactions interfere. The following kinetic deuterium isotope effects on the rearrangement 1 → 2 were measured: kHH/kDH = 6·56; kHH/kHD = 1·19; kHH/kDD = 7·08; kHD/kDD = 5·94; and kDH/kDD = 1·08.On the basis of these results, a concerted two-hydron transfer mechanism is excluded. Instead, a stepwise mechanism is favored, in which at first the 3-hydron of 1 is abstracted by 3 yielding an ion pair(s), the carbanion of which in a separate step is then hydronated to yield the product 2.The abstraction of the 3-hydron from 1 might be hydrogen bond assisted. The two hydron transfer transition states are together rate limiting, although they limit the rate to different extents. A detailed mechanistic analysis is presented together with the results of an investigation of the nature of the catalyst. The dimerization constant for 3 was determined by 1H NMR to be 1·67 l mol-1 at 25·0°C. Isotopomer composition was measured by 1H NMR and GLC was used for the separation of the substrate and products. Computer-assisted capillary GLC was used for the kinetics.
    Additional Material: 6 Ill.
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  • 203
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The Kinetics of reactions of phenacyl benzenesulphonates with benzylamines were investigated in methanol at 45·0 °C and the cross-interaction constants λXY, λYZ and βXZ were determined in order to elucidate the transition-state structure. The unusually small magnitude of λXY can only be accounted for by the resonance ‘shunt’ effect of the α-CO group of the phenacyl system. Large |λYZ| values indicate a small degree of bond breaking whereas relatively large |βXZ| values compared with those for the dissociative SN2 reaction indicate a relatively tight transition state for the reactions. Further, the similar magnitudes of βXZ values compared with those of the corresponding aniline nucleophile series suggest a similar transition-state structure for the two armatic amine nucleophile series.
    Additional Material: 1 Ill.
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  • 204
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 507-518 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The hydrolysis reactions of N-(2,4,6-trinitrophenyl)piperidine (2) and N-(2,4,6-trinitrophenyl)-morpholine (3) were studied. Two kinetic processes well separated in time are observed in both reactions. The fastest process, which is reversible, leads to the formation of a species of λmax 260 and 410 nm and is attributed to the formation of a σ complex of stoichiometry 1 : 2 due to the addition of a second HO- to the σ complex of 1 : 1 stoichiometry. The slowest process leads quantitatively to picrate ion. The equilibrium constants for the formation of the σ complexes of 1:1 and 1:2 stoichiometries and the rate of formation and decomposition of the latter complex were determined. The kinetic data for the slow process lead to the conclusion that the picrate ion is formed from the attack of HO- on the two σ complexes, confirming previous findings. There are some differences in the calculated rates for 2 and 3 which may be an indication that the elimination of the amine is partially rate determining.
    Additional Material: 4 Ill.
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  • 205
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The rate of decarboxylation of 6-nitrobenzisoxazole-3-carboxylate ion increases sharply with increasing head group size in a series of cetyltrialkylammonium bromides (C16H33NR3Br: R = Me, CTABr; R = Et, CTEABr; R = n - Pr, CTPABr; R = n - Bu, CTBABr) with rate enhancements of 102 (CTABr) and 2·8 × 103 (CTBABr). Micellized tetradecylquinuclidinium bromide and hexadecyl-N-methylmorpholinium bromide are slightly better catalysts than CTABr, as is 1,3-bis(N-cetyl-N,N-dimethylamino)propane dibromide, but p-octyloxybenzyltrialkylammonium bromides (alkyl = Me, n - Bu) are less effective than the corresponding CTA+ surfactants. These differences in catalytic efficiency depend on the head group structure and the extent to which the cationic head groups become less accessible to water rather than the overall micellar structure.
    Additional Material: 3 Tab.
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  • 206
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: 1H, 13C, 15N and 17O NMR chemical shifts, 1JNH and 1JCH coupling constants and line widths (Δν1/2) of the 14N and 17O resonance lines were determined for 2-pyrrolidinone neat and for several 2-pyrrolidinone-solvent systems. The 17O NMR chemical shift of 2-pyrrolidinone was clearly most sensitive to the solvent effects, but changes with the solvent were also observable in the 13C (C=O) and 15N NMR chemical shifts, the 1JNH coupling constants and especially the line widths of the 14N and 17O resonance lines. In general, the results reflected a hydrogen bonding effect between the oxygen atom of 2-pyrrolidinone and the proton-donating solvents and a weak molecular interaction of the NH proton of 2-pyrrolidinone with the proton-accepting solvents. The results are compared with the NMR data for the corresponding binary mixtures of 1-ethyl-2-pyrrolidinone.
    Additional Material: 2 Ill.
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  • 207
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 580-584 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Rate constants were determined for the combination reactions of a series of cation radicals derived from substituted anthracenes with acetate, p-nitrobenzoate, trifluoroacetate, nitrate and perchlorate ions. Rate constants, depending on the identities of the cation radicals and the nucleophiles, ranging from about 200 to 2 × 1010 1 mol-1 s-1 were observed in acetonitrile at 293 K. The key steps in the reaction are (1) reversible complex formation between the anion and the cation radical followed by (2) irreversible bond formation \documentclass{article}\pagestyle{empty}\begin{document}$$ \begin{array}{*{20}c} {\rm{Ar}^{ + \cdot } + \rm{X}^ - \rightleftharpoons {{\rm{Ar}^{ + \cdot } } \mathord{\left/ {\vphantom {{\rm{Ar}^{ + \cdot } } {\rm{X}^ - }}} \right. \kern-\nulldelimiterspace} {\rm{X}^ - }}} &&&&& {(1)} \\ {{{\rm{Ar}^{ + \cdot } } \mathord{\left/ {\vphantom {{\rm{Ar}^{ + \cdot } } {\rm{X}^ - }}} \right. \kern-\nulldelimiterspace} {\rm{X}^ - }} \to \rm{Ar}^ \cdot - \rm{X}} &&&&& {(2)} \\ \end{array} $$\end{document}.The preliminary results show that cation radical-anionic nucleophile reactions can be very facile. The cation radicals of 9-nitro- and 9-cyanoanthracene are particularly reactive, giving rise to rate constants close to the diffusion-controlled limit with all anionic nucleophile studied and even react moderately rapidly with perchlorate ion. The reaction with perchlorate ion can be compared to the behavior of stable carbenium ions that coexist with the anion in solution and in crystalline salts.
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  • 208
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 611-622 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The solvent effect on two SN2 reactions was evaluated by discrete, continuum and discrete-continuum models. The potential energy profiles were found to change dramatically on introduction of the solvent effect. The double-well shape which characterizes the F- + CH3F → FCH3 + F- reaction in the gas phase becomes unimodal when the solvent is introduced, in good agreement with experimental data. The solvation parameters are found to intervene in the reaction coordinate. Recent Monte Carlo and molecular dynamics calculations are discussed.
    Additional Material: 4 Ill.
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  • 209
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 631-645 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The kinetics of the aromatic nucleophilic substitution (SNAr) reactions of 1,2-dinitrobenzene (1,2-DNB) with butylamine (BA) and piperidine (PIP) were investigated as a function of the amine concentration and temperature, in chloroform, ethyl acetate, tetrahydrofuran (THF), acetonitrile (ACN), dimethylformamide (DMF), dimethyl sulphoxide (DMSO). benzene, toluene, chlorobenzene and diisopropyl ether.In the set of solvents consisting of ethyl acetate, THF, ACN, DMF and DMSO, neither reaction is catalysed (kA = k1). The sequence and range of reactivity for BA and PIP are similar in these solvents. These results indicate that reactions in which nitro in the leaving group behave differently from SNAr reactions with other leaving groups, such as halogens or alkoxy groups, since an intramolecular hydrogen bond may be expected between the leaving nitro group and the ammonium H of the nucleophiles. The correlations of the rate coefficients obtained with Taft and Kamlet's solvatochromic method support these conclusions.On the other hand, these reactions show mild acceleration with relatively non-polar solvents such as the aromatics and diisopropyl ether. The donor properties of these solvents and experiments with solvent mixtures suggest the formation of electron donor-acceptor complexes between them and 1,2-DNB. Hence the preferential solvation of 1,2-DNB by the donor solvent accounts for the mechanism observed.
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  • 210
    Electronic Resource
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 281-299 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Mechanisms of the hydrolysis of urea have been investigated using the MNDO and AMI methods. All geometries were fully optimized and the transition states were characterized by calculating force constants. The results showed that: (i) The unimolecular decomposition process via the direct intramolecular proton transfer is preferred to both the A1 and the bimolecular nucleophilic attack by water, in agreement with the experimental results of Shaw et al. in the low acidity medium. (ii) The diprotonated form of urea exists as an equilibrium species, which undergoes the A2 type hydrolysis more favorably than the monoprotonated form, as Moodie et al. found in the intermediate acidity medium. (iii) The A2 hydrolysis of the monoprotonated form is very similar to those of acetamide and methyl carbamate. (iv) As the number of the solvate water molecules increases, the activation barrier for the A2 process of the monoprotonated form increases while that for the unimolecular decomposition of the free base form decreases, indicating a possibility of the barrier height reversal in the bulk solvent in favor of the latter process, thus accommodating all the experimentally found trends in the urea hydrolysis. The A1 mechanisms involving six-membered ring type intermediates can be ruled out as untenable since no such equilibrium species was obtained by both the MNDO and AM1 calculations.
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  • 211
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The spectroscopic evidence for the predominance of the equatorial conformers in the title compounds was confirmed by the study of derivatives containing counterpoise substituents, and by chemical equilibration of anancomeric models. ΔG27o°C [P(O)Ph2] ≳ 3·2 kcal/mol was determined in the dioxane, and ΔG55o°C [P(O)Ph2] = 1·42 ± 0·12 kcal/mol in the oxathiane. It follows then that the strong anomeric interaction observed previously in S—C—P segments does not show up in the six-membered heterocycles 2 and 7, which contain O—C—P moieties. This may be due to an inherent inability of oxygen to act as an electron donor to the axial P(O)Ph2 substituent, or to a dominant repulsive steric interaction in the axial conformers.
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  • 212
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: An excellent linear correlation of oxygen-17 substituent chemical shifts (SCS) for twelve α, α, α-trifluoroacetophenones with single σ+ constants, δ = 24·6σ+ + 556·3 (correlation coefficient 0·998) has been observed. However, from this plot, an SCS of 34·3 ppm for 1,1,1-trifluoroacetone will give a corresponding σ+ (γ+) value of 1·44 for a methyl group, which is not in agreement with 0·63-0·79 obtained from solvolytic rate data.
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  • 213
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 383-388 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Norbornadiene, isolated in argon, xenon and nitrogen matrices at 20 K, was irradiated with UV light. Characterized by UV-VIS-IR absorption spectroscopy the photoproduct, representing a single species, was assigned to quadricyclane. This result is compared with the literature data on photochemistry of norbornadiene in the gas and liquid phase. The role of the rigid matrix environment on selectivity of the photochemical reaction is discussed.
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  • 214
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989) 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
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  • 215
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 448-454 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The interaction between pyridoxal-5′-phosphate (PLP) and pyridoxamine-5′-phosphate (PMP) was studied by d.c. and differential pulse polarography. Two reduction waves (or two peaks) were observed. The first wave corresponds to the reduction of the adduct and the second to the reduction of free PLP. The behaviour was similar in analogous Schiff bases. The effects of pH, PMP concentration and the capillary characteristics were studied. The apparent formation constant as a function of the pH was calculated. Thermodynamic parameters were estimated at pH 7 and 0 · 1 M ionic strength. The polarographic and kinetic results show that the overall electrode process appears to be irreversible in a basic medium.
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  • 216
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 2 (1989), S. 476-483 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Dipole moments of para-substituted benzoyl chlorides and bromides, partly measured in benzene and partly recalculated from elderly literature, were analysed in terms of bond moments and additional contributions expressing the conjugation. Although the gross moments are similar, their decomposition yields different pictures for acyl chlorides and bromides. Only in the latter can significant electron transfer from the halogen be observed. On the other hand, conjugation with the benzene nucleus is strong in both aromatic acyl chlorides and bromides, but stronger in chlorides. There is agreement with the evidence from some other physical quantities but not from all.
    Additional Material: 2 Ill.
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  • 217
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Benzyl cations, free of counter ions, have been generated from the nuclear decay of tritium atoms contained exclusively in the side-chain of multi-labelled toluene and allowed to react in competition experiments with benzene and toluene. The aromatic substitution was studied in both the gaseous and liquid phase, employing pure aromatics or aromatics dissolved in n-hexane, carbon tetrachloride and nitromethane as the reaction medium. In the gaseous systems, at 20 Torr total pressure, High meta substitution of toluene indicates extensive isomerization of the excited intermediates, while the increase of the kT/kB value in the Presence of NH3 suggests that selective transalkylation competes with proton transfer to ammonia from the benzyl cation adducts with benzene, but not with toluene. High positional and low substrate selectivities were measured in solution, the decrease in kT/kB (from 2·8 to 1·7) in the different solvents being accompanied by an increase in the o/2p ratio. Competition experiments between benzene and methanol indicate that the reaction is not diffusion controlled. The influence of the reaction medium on the substrate selectivity is explained by postulating the formation of a cation-solvent adduct, where the solvent molecule undergoes displacement by the substrate. Positional selectivity would be controlled in a subsequent step.
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  • 218
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The basic hydrolysis of 2,4-dinitrochlorobenzene (DNCB) and 2,4-dinitrofluorobenzene (DNFB) was studied in the presence of β-cyclodextrin (CDOH) and in the presence of hydroxy-functionalized micelles containing either a primary hydroxy group [hexadecyl-2-hydroxyethyldimethylammonium bromide (CHEDAB)] or a secondary hydroxy group [headecyl-2-hydroxypropyldimethylammonium bromide (CHPDAB) and 2-hydroxyhexadecyltrimethylammonium bromide (2-OHCTAB)].In all systems a biphasic reaction was observed. The first phase consisted of a competition between the additive (either micelle or cyclodextrin) and hydroxide ion for the aromatic substrate, and the second phase consisted of the hydrolysis of the trapped aryl micellar or cyclodextryl ether.The percentage of trapping of the aromatic substrate by the cyclodextrin was similar to that found for reactions in the hydroxy-functionalized micelles (CHPDAB and 2-OHCTAB) which contained secondary hydroxy groups. The relative rates of reaction for DNFB and for DNCB, i.e. F/Cl rate ratios, in the presence of CDOH were similar to those obtained in the presence of 2-OHCTAB but less than that obtained in the presence of CHEDAB. These results support the assumption that in CDOH the secondary hydroxy groups of C-2 or C-3 are involved in covalent bond formation with the aromatic substrate rather than the primary hydroxy group of C-6. All the reactions studied proceed much more slowly in the presence of CDOH than in the presence of the hydroxy-functionalized micelles. This may reflect a catalytic effect of the positively charged surface present in the micelles but not in the cyclodextrin.
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  • 219
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Using the solvatochromic indicator method, a scale of solvent hydrogen-bond basicity, β1 (General), has been set up using a series of double regression equations, \documentclass{article}\pagestyle{empty}\begin{document}$$ \nu = \nu _0 + s\pi _1^* + b\beta _1 $$\end{document} for 11 aniline-type indicators. A similar solvent scale, β1 (Special), has been constructed by the homomorphic comparison method using only results by Laurence et al. on the indicators 4-nitroaniline and 4-nitro-N,N-dimethylaniline. Results are available from our previous work on a general solute scale, β2H, and we have also obtained a special solute scale, β2 (pKHB) from available log K values for hydrogen-bond complexation of bases with 4-fluorophenol in CCl4. However, the two solute β2 scales are virtually identical.It is shown that there is a general connection between β1(General) and β2H, with r = 0·9775 and s.d. = 0·05 for 32 compounds, and between β1(Special) and β2H, with r = 0·9776 and s.d. = 0·06 for the same 32 compounds. The latter correlation over 60 compounds yields r = 0·9684 and s.d. = 0·07. However, there are so many compounds in these regressions for which the differences in the solvent and solute β values are larger than the total expected error of 0·07 units that the use of β1 to predict β2 or vice versa is a very hazardous procedure. About 70 new β1 values obtained by the double regression method are also reported.
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  • 220
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    Journal of Physical Organic Chemistry 2 (1989), S. 573-579 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The MM2 force field has been extended so that calculations may be carried out on siloxanes. The parameters chosen give a good fit to available experimental data.
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  • 221
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    Journal of Physical Organic Chemistry 2 (1989), S. 602-610 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: In order to assist in the interpretation of the D5h molecular structure of [45] (1,2,3,4,5)ferrocenophane (1) obtained from x-ray crystallographic analysis, a hypothetical hydrocarbon C30H40 (2) was derived from 1 by removing the iron atom and subjected to geometry optimization by molecular mechanics. A stable D5 conformer was found for 2, which has a g+ g- g+ helical bridge conformation and a ring-ring distance almost identical with that in 1 and ferrocene itself. Optimization of a perhydrogenated hydrocarbon model gave a highly strained C1 structure.
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  • 222
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    Journal of Physical Organic Chemistry 2 (1989), S. 623-630 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Photolysis of dichlorodiphenylmethane in glassy 2-methyltetrahydrofuran at 77 K results in the formation of diphenylcarbene and the diphenylchloromethyl radical, which were detected by their fluorescence emission and excitation spectra. The relative yields of the carbene and biradical are shown to vary dramatically as a function of photolysis time. The photolability of the diphenylchloromethyl radical is also demonstrated. These results were interpreted in terms of a two-step mechanism, in which the diphenylchloromethyl radical is an intermediate in the formation of diphenylcarbene.
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  • 223
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The formation of a σ-like complex by reaction between 1,3,5-trinitrobenzene and 1,8-diazabicyclo [5.4.0]-undec-7-ene was investigated in toluene at various temperatures. The kinetic data showed autocatalytic behaviour. Inspection of the reaction mixtures at zero reaction time indicated the presence of an equilibrium preceding the attack of the nucleophile, affording a molecular complex (substrate-nucleophile) which is responsible for the observed kinetic features. The present and the previous data led to the conclusion that the catalytic behaviours usually observed in SNAr reactions (in apolar solvents with amines as nucleophiles) are better explained by the presence of substrate-catalyst interactions than by catalysis on departure of the proton and leaving group from the zwitterionic intermediate.
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  • 224
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    Journal of Physical Organic Chemistry 2 (1989), S. 187-204 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Reaction products of bifunctional chain molecules with structure X—(CH2)n—Y may critically depend on the chain length n. When the chain length is short (n ≤ 5), reaction products particular to an intramolecular reaction can be dominant, while a process corresponding to an intermolecular reaction between X—CH3 and H3C—Y may take place for higher homologues having large n (≥10). The reaction switching dependent on n is explained in terms of the encounter probability for both end groups (X and Y) with conformations pertinent to product formation. The reaction switching of this sort is discussed on the basis of a reactivity profile recorded as a function of the chain length. Similar reactivity profiles have been observed for thermal Friedel-Crafts cyclization and photo-Smiles rearrangement/photoredox reaction. It is anticipated that the magic methylene chain length of 7 may give rise to an appreciable decrease in reaction yields (e.g. ‘difficulty in medium-sized ring closure’) or an anomalous switching of reaction pathways due to chain length effects.
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  • 225
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    Journal of Physical Organic Chemistry 2 (1989), S. 214-224 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The solvolysis of 21 different 3- or 17-androstanyl tosylates or chlorides with halogen, hydroxy or oxo substituents in 17- or 3-position shows rate constant variations in hexafluoro isopropanol of up to 6·3 with regular differences for epimeric substituents. Similar variations ae seen over a distance of ∼10 Å in 13C-NMR shifts at C-17-ones of androstan-17-ones with varied halogen substituents in C-3, whereas the shielding observed at other distant carbon atoms excludes significant through bond effects. It is shown how, on the basis of suitable Coulomb-type equations and of force field minimized geometries, both the stability variation of carbocationic transition states and the carbonyl group polarization are predictable by linear electric field effects, using the same parametrization.
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  • 226
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    Journal of Physical Organic Chemistry 2 (1989), S. 263-270 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Reactivity of dialkyl 2-(dimethylamino)ethyl phosphates, (RO)2P(O)OCH2CH2NMe2 (R = Me, PhCH2) was studied in aqueous solutions. Depending on the initial substrate's concentration, reaction can involve the unimolecular fragmentation to N,N-dimethylaziridinium dialkylphosphate, or the bimolecular isomerization to the zwitterionic derivative. The latter reaction proceeds via two consecutive SN2 steps and involves the formation of two ionic intermediates which were synthesized independently and allowed to react to give the zwitterionic product. Rate constants for the isomerization of the dimethyl ester (R = Me), as well as rate constant for the reaction between the corresponding intermediates have been determined, and the reactivity of the dimethyl ester has been compared with that of the dibenzyl derivative.
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  • 227
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    Journal of Physical Organic Chemistry 2 (1989), S. 531-539 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Acid-catalysed condensation of resorcinol with aromatic aldehydes results in 2,8,14,20-tetrasubstitued calix[4] areneoctols. Sixteen compounds of this type containing different aromatic substituents were synthesized. The ring closure step, under the conditions of the reaction, is a reversible process. Four configurations are possible for every constitution, viz. cccc, cctt, ccct and ctct, but only cccc and cctt were formed in detectable amounts. In seven cases the thermodynamically more stable cccc isomers (1a-5a, 7a, 8a) and also the kinetically controlled cctt isomers (1b-5b, 7b, 8b) could be isolated. The configurations of the compounds were assigned by temperature-dependent 1H NMR analysis. The conformational motions of the macrocyclic ring permit only the cccc isomers to show coalescence for the signals of the aromatic Hb protons. The coalescence temperature was determined for isomers 1a (ΔG384≠ = 83·5 kJmol-1) and 3a (ΔG369≠ = 83·7 kJ mol-1). For steric reasons the ‘chair-chair’ conformers B and the ‘quasi-boat-chair’ conformers F are favoured. 1H and 13C NMR shifts show that compounds 1a-5a and 1b-5b have a quasi-axial arrangement of the aromatic substituents, whereas 6-9 have a quasi-equatorial arrangement of the substituents.
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  • 228
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ΔG, ΔH and TΔS of transfer of 25 aliphatic and aromatic solutes from 2,2,4-trimethylpentane to aqueous buffer (pH 7) at 298 K have been examined in terms of intrinsic volumes and the solvatochromic parameters π*, δ, β and α of the pure solutes Correlations of the form \documentclass{article}\pagestyle{empty}\begin{document}$$ XYZ = XYZ_0 + {{mV_{\rm I} } \mathord{\left/ {\vphantom {{mV_{\rm I} } {100}}} \right. \kern-\nulldelimiterspace} {100}} + s\pi ^* + d\delta + d\beta + a\alpha $$\end{document} indicate that the thermodynamic quantities of transfer are unequally affected by solute properties; most notably, for aromatic solutes the cavity term mVI/100 is a principal (unfavorable) factor affecting TΔS, but has little effect on ΔH. Transfer to water is favored by increasing solute π* (dipolarity-polarizability), β (H-bond basicity) and α (H-bond acidity), because water has greater dipolarity, H-bond acidity and H-bond basicity than trimethylpentane. Hydrogen bonding contributes exothermically to ΔH, but unfavorably to TΔS, as would be expected from a loss of transitional entropy. Correlations of ΔG, ΔH and TΔS with solute VI/100, β, α, μ2 and polarizability function [(n2 - 1)/(n2 + 2)] give closely comparable results.
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  • 229
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    Journal of Physical Organic Chemistry 2 (1989) 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
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  • 230
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    Journal of Physical Organic Chemistry 2 (1989), S. 585-601 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Triarylaminium salts smoothly catalyze the cyclopropanation of dienes, styrenes and tetrasubstituted alkenes by ethyl diazoacetate. The reactions are regioselective and, in the case of additions to conjugated dienes, cyclopropane-periselective. A cation radical chain mechanism involving carbene transfer from ethyl diazoacetate to a substrate cation radical is proposed.
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  • 231
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    Journal of Physical Organic Chemistry 2 (1989), S. 646-652 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Using a series of equations connecting experimental and theoretical values, it is possible to discuss the origin of the N-methylation effect in azoles dissolved in water and dimethyl sulphoxide. The existence in the azoles studied of a linear relationship between the gas → solution transfer enthalpies and the charge on the pyrrole hydrogen atom demonstrated the fundamental importance of the loss of an active centre for solvation. For the imidazole-N-methylimidazole pair, the complete thermochemical cycle has been determined, allowing the apparent lack of an effect of N-methylation on the basicity in solution to be discussed.
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  • 232
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    Journal of Physical Organic Chemistry 2 (1989), S. 660-671 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The kinetics of the oxidation of seven substituted ethanols by sodium N-bromobenzenesulphonamide or bromamine-B (BAB) in the presence of HCl was studied at 45 °C. The rate shows a first-order dependence on [BAB]0 and is fractional in [alcohol]0, [H+] and [Cl-]. Ionic strength variations, addition of benzenesulphonamide reaction product and variation of dielectric constant of the medium have no effect on the rate. The solvent isotope effect kH2O′/kD2O′ ≈ 0·97. The rates do not correlate satisfactorily with Taft's substituent constants. Activation parameters ΔH≠, ΔS≠, ΔG≠ and log A were calculated by studying the reaction at different temperatures (308-323 K). It was found that ΔH≠ and ΔS≠ are linearly related and an isokinetic relationship is observed with isokinetic temperature β = 393 K, indicating enthalpy as a controlling factor.
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  • 233
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    Journal of Computational Chemistry 10 (1989), S. 514-519 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The charge on oxygen for a series of compounds was obtained using Mulliken population, natural population analysis (NPA), integrated projected electron population (IPP) analysis, and Bader's topological density analysis, “integrated Bader populations” (IBP). The orbital-based methods (Mulliken and NPA) predict oxygen charges of about -0.6 whereas the spatial-based methods (IPP and IBP) predict charges of about - 1.2 to - 1.3. The differences are ascribed primarily to the nuclear-centered basis sets used in the orbital methods that minimize local atomic polarization effects. Accordingly, such population analyses should be used for electronic structure considerations only with due circumspection. The IPP method as an approximation to IBP shows gross similarities; small but significant differences vary in a nonsystematic manner and IPP values must also be used with care.
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  • 234
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: An SCF calculation has been performed on C63H113N11O12, a derivative of the immuno-suppressive drug cyclosporin, using a 3-21G basis set and a Direct SCF method. A distributed multipole analysis has been performed on the resulting charge density to give a set of multipoles at each atomic site, which are used to calculate the electrostatic potential around the molecule. The potential maxima and minima on the accessible surface of the molecule are compared with those predicted using the corresponding Mulliken charges, and also using a potential-derived point-charge model based on the force-field of Kollman et al. The Mulliken charges give a misleading picture of the electrostatic potential around this peptide. The potential-derived charges give results which are in far better agreement with the ab initio distributed multipole model, despite being derived from calculations on smaller molecules with different basis sets and geometries. The limitations of point-charge models for describing the electrostatic interactions of polypeptides are discussed.
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  • 235
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    Journal of Computational Chemistry 10 (1989), S. 616-627 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: We present a simple computational method for the evaluation of solute-solvent dispersion energy contributions in dilute isotropic solutions, supplementing the method with an analysis of its sensitivity with respect to several parameters (or features of the solvation model) which are left free in the general formulation. The method is a natural complement of the electrostatic solvation procedure described in preceding articles.
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    Journal of Computational Chemistry 10 (1989), S. 648-659 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Calculations of chemical shifts have been carried out using “locally dense” basis sets for the resonant atom of interest, and smaller, attenuated sets on other atoms in the molecule. For carbon, calculations involving a 6-311G(d) triply split valence set with polarization on the resonant atom and 3-21G atomic bases on other heavy atoms result in good agreement with experiment, and are virtually identical to those found employing the larger basis on all atoms. For species such as nitrogen, oxygen, and fluorine where standard balanced basis sets do not agree well with experiment, use of attenuated sets fail as well. The use of locally dense basis sets permits calculations previously impractical, and the successful application to carbon suggests that the chemical shift is most dependent on the local basis set, and less so on whether or not a balanced or unbalanced calculation is being carried out.
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  • 237
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    Journal of Computational Chemistry 10 (1989), S. 635-647 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The molecular mechanics calculations reported earlier for nitrogen heterocycles have now been extended to include the title compounds, and related molecules. It is in general possible to calculate these structures with an accuracy that compares favorably with experiment.
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  • 238
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    Journal of Computational Chemistry 10 (1989), S. 748-748 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 239
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    Journal of Computational Chemistry 10 (1989), S. 798-816 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A procedure that finds the most probable conformational states of a protein chain is described. Single-residue conformations are represented in terms of four conformational states, α, ∊, α*, and ∊*. The conformation of the entire chain is represented by a sequence of single-residue conformational states; the distinct conformations in this representation are called “chain-states.” The first article in this series described a procedure that computes tripeptide conformational probabilities from the amino acid sequence using pattern recognition techniques. The procedure described in this article uses the tripeptide probabilities to estimate the probabilities of the chain-states. The chain-state probability estimator is a product of conditional and marginal probabilities (obtained from the tripeptide probabilities), with a penalty factor to eliminate conformations containing α-helices and ∊-strands of excessive length. The probability estimator considers short-range conformational information, medium-range sequence information and some simple long-range information (through the restrictions on helix and strand lengths). Energy minimization calculations can be carried out in the region of conformational space corresponding to a particular chain-state. By selecting the most probable chain-states, the search can be focused on the most probable, or “important,” regions of the conformational space. These energy calculations are described in the third article of the series. The complete procedure described by the three articles is called PRISM, for pattern recognition-based importance sampling minimization.
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  • 240
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    Journal of Computational Chemistry 10 (1989), S. 817-831 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A procedure that generates random conformations of a protein chain, and then applies energy minimization to find the structure of lowest energy, is described. Single-residue conformations are represented in terms of four conformational states, α, ∊, α*, and ∊*. Each state corresponds to a rectangular region in the φ, ψ map. The conformation of an entire chain is then represented by a sequence of single-residue conformational states. The distinct “chain-states” in this representation correspond to multidimensional rectangular regions in the conformational space of the whole protein. A set of highly-probable chain-states can be predicted from the amino acid sequence using the pattern recognition procedure developed in the first two articles of this series. The importance-sampling minimization procedure of the present article is then used to explore the regions of conformational space corresponding to each of these chain-states. The importance-sampling procedure generates a number of random conformations within a particular multidimensional rectangular region, sampling most densely from the most probable, or “important,” sections of the φ, ψ map. All values of φ and ψ are allowed, but the less-probable values are sampled less often. To achieve this, the random values of φ and Φ are generated from bivariate gaussian distributions that are determined from known X-ray structures. Separate gaussian distributions are used for proline residues in the α and ∊ states, for glycine residues in the α, ∊, α*, and ∊* states, and for ordinary residues involved in 29 different tripeptide conformations. Energy minimization is then applied to the randomly-generated structures to optimize interactions and to improve packing. The final energy values are used to select the best structures. The importance-sampling minimization procedure is tested on the avian pancreatic polypeptide, using chain-states predicted from the amino acid sequence. The conformation having the lowest energy is very similar to the X-ray conformation.
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  • 241
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    Journal of Computational Chemistry 10 (1989), S. 856-860 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Formulas are derived for analytical first and second energy derivatives with respect to nuclear coordinates in molecular mechanics force fields employing lone-pair pseudoatoms. These derivatives may further be used for the calculation of normal modes and vibrational frequencies while properly accounting for the presence of pseudoatoms. The equations are applied using the MM2 force field to calculate the vibrational spectrum of methanol to illustrate the applicability of the method. The results are compared to both experiment and a numerical approximation in which small masses are assigned to the lone-pair pseudoatoms.
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  • 242
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    Journal of Computational Chemistry 10 (1989), S. 863-868 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The steric energy difference (ΔEst) between tertiary carbenium ions (R+) and the corresponding alcohols has been calculated by MM2 for a series of tertiary nonbridgehead substrates and correlated with their rate of solvolytic reactivity. Satisfactory correlation is obtained, except for p-nitrobenzoates of highly congested substrates. The slope and intercept of the correlations remain almost unchanged if bridge-head substrates are included in the plot. However, the quality of the fit is better for bridgehead substrates alone.
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  • 243
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    Journal of Computational Chemistry 10 (1989), S. 753-769 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The well-tempered Gaussian basis sets (14s 10p) for atoms from lithium to neon were contracted and used in restricted Hartree-Fock calculations on 13 systems: Li2(Σ), B2(Σ), C2(Σ), N2(Σ), O2(Σ), F2(Σ), Ne2(Σ), LiF(Σ), BeO(Σ), BF(Σ), CN-(Σ), CO(Σ), and NO+(Σ). Spectroscopic constants (Re, ωe, ωexe, Be, αe, and ke) and one-electron properties (dipole, quadrupole, and octupole moments at the center of mass and electric field, electric field gradient, potential, and electron density at the nuclei) were evaluated and compared with the Hartree-Fock results. The largest contracted basis set (7s6p3d) gives results very close to the Hartree-Fock values; the remaining differences are attributed to the absence of the f functions in the present basis sets. For Ne2, the interaction energy was calculated; the magnitude of the basis-set superposition error was found to be very small (less than 3 μEh at 2.8 a0 and less than 2 μEh at 5.0 a0).
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  • 244
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    Journal of Computational Chemistry 10 (1989), S. 832-849 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The geometries, relative conformational energies, and dipole moments of mono and polychlorosilanes have been calculated using ab initio molecular orbital (MO) theory. Calculations at the HF/3-21G(*) level, with the exception of dipole moments, give reasonable agreement with experimental data. A new MM2 force field for chlorosilanes, which includes terms for bond length shortening and bond angle compression due to the attachment of electronegative Cl atoms, has been developed on the basis of experimental and ab initio results. The new force field is generally successful in predicting structural parameters, but is unable to reproduce the dipole moments of several model systems. While dipole moment predictions are not the authors' main interest, this failure defines a shortcoming in the MM2 method. The new parameters have been applied to problems in the prediction of stereochemistries of cyclic systems, and compared with experimental results where data are available.
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  • 245
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    Journal of Computational Chemistry 10 (1989), S. 850-855 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Molecular dynamics simulations out to 100 ps have been carried out at 300 K in vacuo on the repeating pentapeptide, (VPGVG), of the elastin fiber. The structure employed in the simulation is a β-spiral (helical structure) with 2.7 pentamers per turn and with a 9.45 Å rise per turn and 21.6 Å rise per turn in the relaxed and extended states, respectively. Large amplitude backbone torsion angle fluctuations are observed in the relaxed state, and significant damping is observed upon extension, particularly in the suspended segments of the β-spiral structure. Accordingly the entropy change an extension was computed and found to be a substantial -1.1 entropy units per residue. The various energy components are compared for relaxed and extended states and the relevance of the results to the molecular mechanism of entropic elasticity is discussed.
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  • 246
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    Journal of Computational Chemistry 10 (1989), S. 965-974 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A modified scheme of a previously developed concept of atomic valence numbers in molecules is presented. The relation to population analysis is demonstrated. The scheme is suitable for ab initio wave functions with extended basis sets. The procedure involved a combination of symmetric orthogonalization and contraction of the basis set. The method is used for a systematic investigation of a series of compounds with first-row atoms from Li to F. The predicted atomic charges and valence numbers are in line with results from infrared spectroscopy and multipole moment analysis.
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    Journal of Computational Chemistry 10 (1989), S. 55-62 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The determination of minima and saddle points on the potential energy surfaces of the hydrogen bonded species O2-HF and O2-H2O is performed with unrestricted Hartree-Fock calculations. Geometries, electron density distributions, and relative energies for every stationary point are reported. Only one true minimum is found for O2-HF and for O2-H2O, and this approximately corresponds to a structure where the partially positive hydrogen atom is located along one of the superoxide ion electron lone-pair directions. Calculated ΔH, ΔS, and ΔG values for the reaction between O2- and H2O are in good agreement with experimental data.
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  • 248
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    Journal of Computational Chemistry 10 (1989), S. 17-34 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The procedure for deorthogonalization (D) of atomic orbitals in the semiempirical CNDO approach is reviewed. For comparative studies, CNDO/2, CNDO/2D, and STO-3G calculations of molecular dipole moments and Mulliken populations are carried out on 35 prototype molecules containing H, C, N, O, and F atoms. The calculated values are assessed on the basis of how well they agree with experimental trends, chemical bonding theories, and ab initio molecular orbital (MO) values. Results of analyses indicate that the CNDO/2D values for dipole moments are in reasonable agreement with experimental values, and those for net atomic charges and electron populations bear greater resemblance to the ab initio (STO-3G and 6-31G**) values than the original CNDO/2 values. These findings, together with those of previous investigators, demonstrate unequivocally the advantages of incorporating deorthogonalization into routine CNDO/2 or INDO calculations as a means to obtain reasonable estimates of charge distributions.
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    Journal of Computational Chemistry 10 (1989), S. 63-76 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Matrix elements for the first and second derivatives of the internal coordinates with respect to Cartesian coordinates are reported for stretching, linear, nonlinear, and out-of-plane bending and torsional motion. Derivatives of the energy with respect to the Cartesian coordinates are calculated with the chain rule. Derivatives of the energy with respect to the internal coordinates are straightforward, but the calculation of the derivatives of the internal coordinates with respect to the Cartesian coordinates can be simplified by the following two steps outlined in this article. First, the number of terms in the analytical functions can be reduced or will vanish when the derivatives of the bond length, bond angle, and torsion angle are reported in a local coordinate system in which one bond lies on an axis and an adjacent bond lies in the plane of two axes or is projected onto perpendicular planes for linear and out-of-plane bending motion. Second, a simple rotation transforms these derivatives to the appropriate orientation in the space-fixed molecular coordinate system. Functions of the internal coordinates are invariant with respect to translation and rotation. The translational invariance and the symmetry of the second derivatives for a system with L atoms are used to select L-1- and L(L-1)/2-independent first and second derivatives, respectively, of which approximately half of the latter vanish in the local coordinate system. The rotational invariance permits the transformation of the simplified derivatives in the local coordinate system to any orientation in space. The approach outlined in this article simplifies the formulas by expressing them in a local coordinate system, identifies the most convenient independent elements to compute, from which the dependent ones are calculated, and defines a transformation to the space-fixed molecular coordinate system.
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    Journal of Computational Chemistry 10 (1989), S. 77-93 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Radial dielectric constant (permittivity) functions for ionic solute, polar solvent systems of the type obtainable from the Lorentz-Debye continuum field formulations are reexamined. Major interest is focused on the assumptions underlying these formulations and their expression in limiting field behavior. The analysis is extended to dipolar solutes and the importance of two types of corrections are evaluated. The first draws connections with the concept of the reaction field as employed by Onsager. This correction is shown to be significant as regards range of predicted saturation effects and for dipole moment self-consistency, for the same type molecule serving as solute and solvent. The second type correction involves the phenomenon of electrostriction whose effects appear much more limited both in range and on the intensity of the fields necessary for its observation. Application of the permittivity functions developed to compute modified Born model hydration energies for a variety of ions is illustrated. Excellent asymptotic approximations for all radial permittivity equations of interest are also presented which should enhance their future utility.
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  • 251
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    Journal of Computational Chemistry 10 (1989), S. 94-98 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Theoretical analysis of the electronic effect of aromatic substituents was done with the use of the AM1 computational procedure. The gas-phase acidity of substituted benzoic acids was linear with the difference in the heat of formation between corresponding benzoic acids and benzoate anions, the energy of the highest occupied molecular orbital, and the net charge on the acidic oxygen atoms of the corresponding benzoate anions. The Hammett σ constant was linearly correlated with the net charge on the atoms of the acid moiety of substituted benzoic acids. The AM1 computational procedure satisfactorily reproduced the electronic properties of a wide variety of substituents.
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  • 252
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    Journal of Computational Chemistry 10 (1989), S. 99-103 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: For a series of simple alkyldisilanes, 3-21G (*) full gradient geometry optimizations have been performed to yield both structural and conformational energy data which was suitable for calibrating the MM2 force field for disilanes. We have examined several model structures which yielded sufficient information about the rotational potential around the Si-Si bond to enable us to revise and augment those reported by Frierson. These parameters were questioned by us in the course of MM2 studies of 1,2-disilacyclobutanes. We report new Si-Si torsion parameters as well as pertinent structural data from 3-21G(*) geometry optimizations and relative conformational energies derived from Møller-Plesset (MP2/MP3) calculations at the 6-31(*)/3-21G(*) level. The new parameters were applied to the 1,2-dimethyl-1,2-disilacyclohexane system and those results are also reported.
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  • 253
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    Journal of Computational Chemistry 10 (1989), S. 104-111 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Three improvements on the direct self-consistent field method are proposed and tested which together increase CPU-efficiency by about 50%: (i) selective storage of costly integral batches; (ii) improved integral bond for prescreening; (iii) decomposition of the current density matrix into a linear combination of previous density matrices - for which the two-electron contributions to the Fock matrix are available - and a remainder ΔD, which is minimized; construction of the current Fock matrix only requires processing of the small ΔD which enhances prescreening.
    Additional Material: 3 Ill.
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  • 254
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    Journal of Computational Chemistry 10 (1989), S. 112-117 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Practical methods of generating reliable and economic basis sets for relativistic self-consistent fields (RSCF) calculations are developed. Large component basis sets are generated from constrained optimizations of exponents in the nonrelativistic atomic calculations for light atoms. For heavy atoms, large component basis sets for inner core orbitals are generated by fitting numerical atomic spinors of Dirac-Hartree-Fock calculations with appropriate number of Slater-type functions. Small component basis sets are obtained by using the kinetic balance condition and other computational criteria. With judicious selections of the basis sets, virtual orbitals in RSCF calculations become very similar to those in nonrelativistic calculations, implying that relativistic virtual orbitals can be used in electron correlation calculations in the same manner as the conventional nonrelativistic virtual orbitals. It is also evident that the Koopmans' theorem is also valid in RSCF results.
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  • 255
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    Journal of Computational Chemistry 10 (1989), S. 137-137 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 256
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    Journal of Computational Chemistry 10 (1989), S. 136-136 
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    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 257
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    Journal of Computational Chemistry 10 (1989), S. 138-138 
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    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 258
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    Journal of Computational Chemistry 10 (1989) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 259
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    Journal of Computational Chemistry 10 (1989), S. 118-135 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The theory of atoms in molecules defines an unambiguous partitioning of the three-dimensional electron density into atomic basins based on the zero-flux surfaces of the gradient of the electron density, ∇(r). Integrations of the electron density within such basins yield integrated Bader populations (IBP) that have a rigorous foundation in quantum mechanics. In the density integration technique based on the two-dimensional electron density projection function, P(x,z), integrated projection populations (IPP) are obtained by integration within regions demarked by steepest descent lines Dp of P(x,z). These density integration techniques are compared by an analysis of the electron density of diatomic molecules that is based on the properties of the zero-flux surface that partitions the electron density between the atoms. The conventional method for the partitioning of regions of P(x,z) approximates the virial partitioning. Differences between IPP and IBP can be quantitatively described by two terms. One term reflects the error intrinsic to projection populations as a result of the loss of all information about the electron distribution in the third dimension in the calculation of P(x,z). The second term accounts for the effects of the displacement of the demarcation lines Dp toward the less polarizable atom compared with the cross-section of the density with the plane of projection, Dd. The analysis suggests the definition of a projection population IPP2 that is based on the cross-section Dd instead of the demarcation lines Dp. Relations between the populations IPP, IPP2, and IBP are derived for diatomic molecules and numerical results are presented for a series of diatomic molecules. Several polyatomic anions are also discussed. The values of IPP are found to be good approximations of IBP in highly polar diatomic molecules. In cases where the bonding involves comparatively little intramolecular charge transfer IPP2 is the better and equally satisfactory projection population. In the intermediate semipolar bonding situations projection populations provide qualitatively correct descriptions of the charge distributions but the numerical agreement with the IBP values is less satisfactory.
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  • 260
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    Journal of Computational Chemistry 10 (1989), S. 145-151 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Results of molecular orbital (MO) calculations by the complete neglect of differential overlap (CNDO/2) method on 50 small molecules are reported. The summation of calculated atomic polarizabilities are equated with molecular polarizabilities, and these are compared with experimentally determined values. It is found that there is very good agreement between calculated and experimental molecular polarizability. This provides a reliable method for the determination of molecular polarizabilities for compounds for which experimental values are not known. The relationship between log P and polarizability is discussed and analyzed in terms of contributions from electronic components to the partitioning energy.
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  • 261
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    Journal of Computational Chemistry 10 (1989), S. 163-175 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The potential energy surfaces for the proton transfer processes in H+(H2O)n with n=2 ∼ 11 have been studied using the semiempirical AM1 method. Two model systems were adopted: branched and linear systems. The branched system showed a tendency to form a bulk cluster, while the linear system showed a tendency toward a constant barrier height with increasing number of water molecules in the model system. The potential energy surfaces were discussed using Marcus theory. In the case of H+ (H2O)n with n=10 and 11, the intrinsic barrier to the proton transfer was found to be around 1.0 kcal/mol.
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  • 262
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    Journal of Computational Chemistry 10 (1989), S. 152-162 
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    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: An alternative route toward developing basis sets for post-Hartree-Fock calculations, the hybrid bond polarization function method, is investigated. Two new basis sets, denoted 6-31G(d, p)+ B and 6-31 + G(d,p)+B, are defined for the first-row hydrides. The dissociation energies of the first-row hydride species in their respective ground states are computed using full fourth-order Møller-Plesset theory, and compared with results obtained with large polarized basis sets containing no bond functions. It is shown that results are competitive even with basis sets as large as 6-311++G(3df,3pd), while computation times are reduced by a factor of 4 to 20. On empirical grounds, the basis set superposition error should be neglected entirely.
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  • 263
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    Journal of Computational Chemistry 10 (1989), S. 176-185 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A new method of eliminating the finite-time-step error inherent in diffusion quantum Monte Carlo is presented, utilizing an improved version of the existing differential techniques. An implementation is described and results of several small but representative calculations are discussed. The pertinent computation requirements on these systems were reduced by up to a factor of five by the new algorithm. It is speculated that this method may be easily applied to other quantum Monte Carlo and discretized path integral Monte Carlo techniques having related finite step-size errors with a possibility of obtaining similar good results.
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  • 264
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    Journal of Computational Chemistry 10 (1989), S. 209-220 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A new method for obtaining optimized parameters for semiempirical methods has been developed and applied to the modified neglect of diatomic overlap (MNDO) method. The method uses derivatives of calculated values for properties with respect to adjustable parameters to obtain the optimized values of parameters. The large increase in speed is a result of using a simple series expression for calculated values of properties rather than employing full semiempirical calculations. With this optimization procedure, the rate-determining step for parameterizing elements changes from the mechanics of parameterization to the assembling of experimental reference data.
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  • 265
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    Journal of Computational Chemistry 10 (1989), S. 203-208 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The stochastic search method was used to seek all of the conformations for 32 bicyclic hydrocarbons. Since the size of the random kick used is sufficient to invert the configurations of carbon atoms, the out, out, in, out, and in, in conformations were all found in a single stochastic run for each hydrocarbon. The lowest energy conformer obtained in each category is reported. A modification of the program to prevent inversion of configuration was developed. It was found, in some cases, that in, in and out, out isomers for some bicyclic hydrocarbons were interconverted by this modified program, presumably through the “homeomorphic isomerization” process described by Park and Simmons. A statistical formula for estimating the approximate chances of finding (or missing) any conformer as a function of the number of random kicks given is derived and presented.
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  • 266
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    Journal of Computational Chemistry 10 (1989), S. 221-264 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: MNDO/AM1-type parameters for twelve elements have been optimized using a newly developed method for optimizing parameters for semiempirical methods. With the new method, MNDO-PM3, the average difference between the predicted heats of formation and experimental values for 657 compounds is 7.8 kcal/mol, and for 106 hypervalent compounds, 13.6 kcal/mol. For MNDO the equivalent differences are 13.9 and 75.8 kcal/mol, while those for AM1, in which MNDO parameters are used for aluminum, phosphorus, and sulfur, are 12.7 and 83.1 kcal/mol, respectively. Average errors for ionization potentials, bond angles, and dipole moments are intermediate between those for MNDO and AM1, while errors in bond lengths are slightly reduced.
    Additional Material: 4 Ill.
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  • 267
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    Journal of Computational Chemistry 10 (1989), S. 186-202 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: π-Electron delocalization in neutral and protonated “doubly-extended-guanidine,” (H2N)2C=N—CH=N - CH=NH, has been studied by ab initio methods at the self-consistent field (SCF) STO-3G and 3-21G levels for a large number of tautomeric, rotameric, pseudocyclic, and monocyclic (disubstituted triazine) forms. These π systems have been characterized in terms of a number of structural and energetic parameters: degree of single/bond character from bond lengths and π bond orders, electron distributions, and tautomer, rotamer, and protonation energies. The acyclic neutral forms exhibit largely alternant single-double bond patterns as predicted by classical bonding structures but with, however, significant deviations due to conjugation. The acyclic protonated forms exhibit bond patterns consistent with resonance delocalized structures extending over the whole molecule (“doubly-extended guanidinium”) or part of the molecule (“extended-guanidinium”) or guanidinium . All systems showed alternant charge distributions with electron-deficient carbons. The energy results have been analyzed in terms of possible contributions from steric interactions, lone-pair repulsions, purportive electrostatic interactions in pseudocyclic forms, overall π-system conformation (extended, kinked, or folded), and specific through-space π-overlap interactions in some pseudocyclic forms. It was found that these other interactions usually dominate the specifically π effects so that the general concept of preferential π delocalization in straight lines does not hold for the acyclic systems. Some interesting examples of pseudocyclic forms exhibiting strongly stabilizing intramolecular interactions attributed to π through-space coupling are identified. These systems with incipient-ring characteristics present intermediate bonding models between the acyclic and closed-ring π systems. The extent of stabilization of the guanidinium-type cations by resonance delocalization in cyclic systems depended on whether it reinforced or interfered with the overall ring delocalization.
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  • 268
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    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 269
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    Journal of Computational Chemistry 10 (1989), S. 265-283 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A study of systems containing the title moiety is described, with special reference to the anomeric effect. We have calculated ab initio, using Gaussian-80 with the 3-21G basis set, all basic conformations of methylene-diamine (H2N—CH2—NH2) and its N-methyl derivative with full geometry optimization of energy minima and barriers. The structural data thus obtained, were then employed to parameterize Allinger's MM2-80 force field in a procedure similar to that described for oxygen derivatives, including hydrogen-bonding effects and C—N bond shortening in tertiary amines. This modification, termed MM2-AE was then used to calculate larger molecules, including N,N′-di- and N,N,N′,N′-tetramethyl-methylenediamine, various 1,3-diazane systems, and 1,4,5,8-tetraazadecalin derivatives of established (x-ray) structures. The results are discussed in light of their verificative and predictive power and appear to validate MM2-AE as a useful computational procedure.
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  • 270
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    Journal of Computational Chemistry 10 (1989), S. 479-487 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab Initio charge distributions for amino acid dipeptides are derived utilizing two medium-sized basis sets. Peptide charges differ in two ways from those of existing force fields: the magnitude of the peptide dipole and the dependency on the residue type. The merging of charge distributions of side chain and backbone fragments within a semiclassical model including polarization is investigated. Polarization plays a small, but distinct role in improving the correspondence with ab initio data derived for the complete dipeptide. A description in terms of partly overlapping, interacting fragments correlates well with the ab initio data. The method can be used to derive the electrostatic properties of biological macromolecules by combining accurate descriptions of short range interactions (using good quality basis sets on not too small fragments) with good classical models of long range interactions (using multicenter multipole expansions and atomic polarizability tensors). Factors limiting the accuracy of the present representations are discussed.
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    Journal of Computational Chemistry 10 (1989), S. 488-494 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Monte Carlo simulations have been performed to study the conformations of the pentapeptide fragments of normal adult (Thr-Pro-Glu-Glu-Lys) and sickle-like anemia hemoglobin (Thr-Pro-Val-Glu-Lys). The results show that the energy optimized conformation of normal adult hemoglobin-fragment agrees with the X-ray experiment and the theoretically determined conformation of the sickle-like anemia hemoglobin-fragment is identical with the conformation of the normal adult hemoglobin-fragment.
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  • 272
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    International Journal of Chemical Kinetics 21 (1989), S. 1-20 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method is described for the measurement of relative rate constants for abstraction of hydrogen from ethylene at temperatures in the region of 750 K. The method is based on the effect of the addition of small quantities of propane and isobutane on the rates of formation of products in the thermal chain reactions of ethylene. On the assumption that methane and ethane are formed by the following reactions, measurements of the ratio of the rates of formation of methane and ethane in the presence and absence of the additive gave the following results: \documentclass{article}\pagestyle{empty}\begin{document}$$\log (k_7 /k_2) = (- 0.50 \pm 0.4) + (3200 \pm 1000)/2.3T$$\end{document} \documentclass{article}\pagestyle{empty}\begin{document}$$\log (k_8 /k_3) = (- 0.20 \pm 0.4) + (2800 \pm 1000)/2.3T$$\end{document} \documentclass{article}\pagestyle{empty}\begin{document}$$\log (k_{11} /k_2) = (- 0.97 \pm 0.4) + (4600 \pm 1000)/2.3T$$\end{document} \documentclass{article}\pagestyle{empty}\begin{document}$$\log (k_{12} /k_3) = (- 2.0 \pm 0.4) + (6300 \pm 1000)/2.3T$$\end{document} Values for k2 and k3 obtained from these ratios are compared with previous measurements.
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    International Journal of Chemical Kinetics 21 (1989), S. 71-81 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The permanganate oxidation of L-valine has been studied by visible spectrophotometry in neutral aqueous solutions. Under these conditions, both the zwitterionic and anionic forms of the amino acid are oxidized, the reaction being autocatalyzed by soluble colloidal manganese dioxide. Kinetic data for both the uncatalyzed and autocatalytic reaction pathways have been obtained, and reaction sequences consistent with the experimental findings are proposed.
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    International Journal of Chemical Kinetics 21 (1989) 
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 275
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    International Journal of Chemical Kinetics 21 (1989), S. 207-218 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The photo-oxidation of n-heptane in synthetic air containing methyl nitrite and nitric oxide has been ivestigated in an atmospheric flow reactor. By measuring the total yields of heptyl nitrate products, relative to the depletion of the n-heptane, the rate constant ratio, k3b/k3a has been determined for the reactions: Over the temperature range 253-325 K and at a total pressure of 730 Torr, the following relative Arrhenius equation has been obtained from the present study together with literature data: \documentclass{article}\pagestyle{empty}\begin{document}$$k_{3b} /k_{3a} = (1.4 \pm 1.1) \times 10^{ - 3} \exp [1640 \pm 250)/T]$$\end{document} These results confirm that the formation of alkyl nitrates from the photo-oxidation of n-alkanes arise from a primary reaction between the alkylperoxy radicals and nitric oxide. Furthermore the present experiments show that the lifetime of the intermediate in this type of reaction, presumed to be an alkyl peroxynitrite, ROONO, must be less than a few seconds.
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  • 276
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    International Journal of Chemical Kinetics 21 (1989), S. 245-250 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Rate constants for the reactions of tert-butoxy radicals (generated by the thermal decomposition of di-tert-butylperoxyoxalate) with several sulfur containing compounds have been measured at 310 K in benzene. Hexanethiol (k = 6.5 × 107M-1s-1) reacts considerably faster than alkyl sulfides and disulfides. For these compounds the reaction rate constants are slightly dependent on the α-hydrogen type, changing (when it is expressed per hydrogen atom) only a factor 5 for sulfides and 3 for disulfides when the α-hydrogen is changed from primary (methyl) to tertiary (isopropyl). The data obtained are compared to those found for the deactivation of the benzophenone triplet. Values of ktert-butoxy/kbenzophenone range from ca 10-3 (di-tert-butyl disulfide) to 7.5 (hexanethiol). The results obtained are rationalized in terms of bond strength, steric hindrance, and charge transfer contributions to the critical configuration energies.
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  • 277
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    International Journal of Chemical Kinetics 21 (1989), S. 387-397 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The decomposition of 1-chloro-1,1-difluoroethane by a radical chain reaction has been studied in a flow reactor in the temperature range from 503 to 773 K. For the initiation of the chain small amounts of added chlorine were photolyzed with a XeCl laser (λ = 308 nm). The formation of the dehydrochlorination and chlorination products, vinylidene fluoride, and 1,2-dichloro-1,1-difluoroethane respectively, is described by a kinetic model. Arrhenius parameters for the two abstraction reactions \documentclass{article}\pagestyle{empty}\begin{document}$${\rm CI + CH}_{\rm 3} {\rm CCIF}_{\rm 2} {\hbox to 25pt{\rightarrowfill}} {\hskip-18pt ^{K_2 }}{\hskip1em} {\rm HCI + CH}_{\rm 2} {\rm CCIF}_{\rm 2}$$\end{document} and \documentclass{article}\pagestyle{empty}\begin{document}$${\rm CI + CH}_{\rm 2} {\rm CICCIF}_{\rm 2} {\hbox to 25pt{\rightarrowfill}} {\hskip-18pt ^{K_7 }}{\hskip1em} {\rm HCI + CHCICCIF}_{\rm 2}$$\end{document} were determined by a competition method: \documentclass{article}\pagestyle{empty}\begin{document}$$\log _{10} (k_2 /cm^3 {\rm mol}^{{\rm - 1}} {\rm s}^{{\rm - 1}} = (13.6 \pm 0.1) - (9200 \pm 300)/4.576T$$\end{document} \documentclass{article}\pagestyle{empty}\begin{document}$$\log _{10} (k_7 /cm^3 {\rm mol}^{{\rm - 1}} {\rm s}^{{\rm - 1}} = (13.7 \pm 0.1) - (6500 \pm 200)/4.576T$$\end{document} Experimental and modeling results are discussed with respect to former studies on the thermal reaction of 1-chloro-1,1-difluoroethane.
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  • 278
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of reaction of substituted 2-aminobenzothiazoles and phenacyl bromide have been followed conductometrically and in some cases, argentometrically. Both the methods produced almost the same rate constants. Substituents at position 5 of the benzothiazole nucleus behave like para substituents of the benzene ring. A correlation with Hammett σp substituent constants has been obtained with a rho value of -1.04. The rate data of quaternization reaction of 4, 5, and 6 substituted 2-aminobenzothiazoles with phenacyl bromide have been correlated with Fk, Rk, and Vw values by multiple regression analysis with the equation suggested by Williams and Norrington and modified by us. The values are found to correlate well with the equation, log k = -4.4979 - 0.4815fjFk + 0.5933rjRk - 0.0277Vw.
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  • 279
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    International Journal of Chemical Kinetics 21 (1989), S. 519-533 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A kinetic study of uncatalyzed and Ru(III) catalyzed oxidation of indigo carmine(IC) (disodium 3,3′-dioxobi-indolin-2,2′-ylidene-5,5′-disulphonate) by iodate ion in aqueous sulphuric acid solution is reported. The uncatalyzed reaction order was found to be four; one each with respect to IC and iodate ion and second order with H+ ion. The Ru(III) catalyzed reaction was of fifth order, second order with respect to H+ and first order with respect to reductant, oxidant, and catalyst. Stoichiometric ratios of both reactions were the same with a 3:2 reductant-oxidant ratio. In both uncatalyzed and catalyzed reactions isatin-5-monosulphonic acid (2,3-dioxoindoline-5-sulphonic acid) was observed as the oxidation product. Rate constants for both the reactions are reported. Reaction mechanisms consistent with the experimental data are suggested.Further, a fixed time method is described for the determination of Ru(III), based on its ability to catalyze the oxidation of IC by acidic iodate. Using [H+] 2.25M, [iodate] 1.00 × 10-3M and [IC] 5.0 × 10-5M, in presence of Ru(III), the reaction followed first order kinetics with respect to IC. The interference of various cations, neutral salts, and potassium iodide on the determination of Ru(III) was studied using synthetic mixtures. The selectivity of the method and the recommended procedure are described.
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  • 280
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 3-Methylfuran has been identified as a product of the gas-phase reaction of the OH radical with isoprene, and under simulated atmospheric conditions a formation yield of 0.044 ± 0.006 was determined. In an analogous manner, the OH radical reaction with 1,3-butadiene formed furan with a yield of 0.039 ± 0.011. Using a relative rate method, a rate constant for the reaction of the OH radical with 3-methylfuran of 9.35 × 10-11 cm3 molecule-1 s-1 (with an estimated overall uncertainty of ±20%) at 296 ± 2 K was also determined. These data show that 3-methylfuran is a reactive compound which will be present in the troposphere at concentrations ≤5% of those of its isoprene precursor.
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  • 281
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    International Journal of Chemical Kinetics 21 (1989), S. 729-732 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 2 Ill.
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  • 282
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    International Journal of Chemical Kinetics 21 (1989), S. 737-747 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of the reaction of MoOS2(S2CNR2)2 (R = CH3, C2H5, n-C3H7) with PPh3 have been studied using a Stopped-flow method. It was found that these MoOS2(S2CNR2)2 complexes react with PPh3 in the form of an irreversible second-order reaction. The rate constants at 25°C are respectively 48.4, 23.8, and 20.8 mol-1 dm3 s-1 and the activation energies are 4.8, 4.9, and 5.0 Kcal/mol with R = CH3, C2H5, and n-C3H7.
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  • 283
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    International Journal of Chemical Kinetics 21 (1989), S. 775-799 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The nitroarene products of the gas-phase reactions of acenaphthylene, acenaphthene, phenanthrene, and anthracene-d10 with N2O5 and the OH radical (in the presence of NOx) are reported. The calculated atmospheric lifetimes of these polycyclic aromatic hydrocarbons (PAH), as well as those of naphthalene, 1- and 2-methylnaphthalene, biphenyl, fluoranthene, pyrene, and acephenanthrylene, show that reaction with the OH radical is the dominant loss process for these PAH, with the exception of acenaphthylene, acenaphthene, and acephenanthrylene which contain an external cyclopenta-fused ring. For these latter PAH, reaction with the NO3 radical, and for acenaphthylene and acephenanthrylene reaction with O3, are also expected to be important atmospheric loss processes.The nitroarenes observed as products of the atmospherically-important gas-phase reactions of the PAH in environmental chamber studies are compared with the nitroarenes measured in ambient air samples collected in California. It is concluded that although nitroarenes are formed in low yields (≲5%) from the OH radical-initiated reactions of the PAH, atmospheric formation of nitroarenes may contribute significantly to ambient nitroarene concentrations.
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  • 284
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    International Journal of Chemical Kinetics 21 (1989), S. 885-908 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Generalized models for steady state catalytic processes are presented in matrix form. Multistep reaction rate control is assumed. Numerical algorithms for solving of the created linear and nonlinear equation systems are developed and tested. Four examples are considered: an Eley-Rideal-mechanism, a Langmuir-Hinshelwood mechanism, a dual route, dual site mechanism, and a monomolecular decomposition with steady state multiplicity. The overall reaction rates are simulated as a function of the reactant concentrations.A maximum reaction rate is obtained in the case of a Langmuir-Hinshelwood mechanism (example 2), the location of the rate maximum in the concentration domain is shifted towards the concentration of the reactant with the lowest adsorption constants. An Eley-Rideal mechanism (example 1) has always monotonously increasing rate curves. In the case of steady state multiplicity (example 4) all steady states could be simulated with the proposed algorithm. The computation of reaction rate surfaces is important in investigating the behavior of complicated catalytic systems (e.g., systems with multistep rate control and/or steady state multiplicity), in planning of experiments and in chemical reactor simulation.
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  • 285
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    International Journal of Chemical Kinetics 21 (1989), S. 923-945 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Single-channel hindered Gorin model RRKM calculations were performed on reaction (1). Good agreement between theory and experiment was obtained for the temperature and pressure dependence of reaction (1). Isotopic data for the reverse association reaction, (-1), reported previously, are consistent with the model. Rate constants were cast in the form of an analytical expression and appropriate parameters were tabulated.
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  • 286
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    International Journal of Chemical Kinetics 21 (1989), S. 947-958 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of acetylene polymerization initiated by neopentane (Np) or acetone (Ac) decompositions has been investigated in a static reactor dynamically coupled to a modulated beam mass spectrometer between 850-950 K. Overall rates follow the expression: R = -d[C2H2]/dt = ks[X]1/2[C2H2] + ku[C2H2]2 (I), where X represents Np or Ac and ks, ku the rate constants of the sensitized and unsensitized reactions, respectively. The rate law of the sensitized reaction clearly suggests a chain polymerization mechanism with ks = kp(ki/kt)1/2 (i, t, and p stand for initiation, termination, and propagation, respectively). Remarkably, the derived values of kp are nearly independent of the sensitizer, although Ac acts as a source of methyl radicals whereas Np also produces hydrogen atoms, and fall in the expected range for the addition of vinylic radicals to acetylene. It is shown that a chain transfer process involving the fast [1,5] intramolecular hydrogen atom shift in 4-methyl-buta-1,3-dien-1-yl radicals (CH3—CH = CH—CH =ĊH) followed by further addition to C2H2 and aromatization, transforms methyl radicals into hydrogen atoms and is able to account for the presence of toluene among the products of the sensitized reactions. Based on current thermochemical data for the but-1-en-3-yn-2-yl radical (CH2=Ċ—C≡CH) and present rates of propagation it is argued that if the unsensitized polymerization of acetylene also proceeded by a vinyl radical chain, then even the most favorable self-initiation reaction: 2C2H2 = C4H3 + H (a), would be far too slow. Finally, present results also show that acetone at impurity levels (≤ 0.1%) can not provide fast enough spurious initiation rates in chain mechanisms for the “unsensitized” acetylene pyrolysis at pressures above 10 torr.
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  • 287
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 288
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    International Journal of Chemical Kinetics 21 (1989), S. 267-291 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The pressure and temperature dependences of association reactions involving atoms and/or radicals is discussed and illustrated by reference to the reactions CH3 + CH3 → C2H6, CH3 + O2 → CH3O2, CH3 + H → CH4, and H + C2H4 → C2H5. Recent experimental measurements of the rate coefficients, k([M], T) are described, particular attention being paid to experiments designed to measure the rate coefficient over wide ranges of pressure and temperature. Methods of fitting the experimental data, to obtain estimates of the limiting rate coefficients, k0 and k∞, and to permit extrapolation to regions beyond the experimental range, are discussed. These methods include the Troe factorization technique, a combination of master equation and variational RRKM theory, and recent calculations by Wagner and Wardlaw using the technique developed by Wardlaw and Marcus to describe loose transition states.
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  • 289
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    International Journal of Chemical Kinetics 21 (1989), S. 21-29 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Rate constants and activation parameters of direct reaction of oxirane with certain alkyl-2-hydroxyethyl sulfides and/or successive oxyethylene adducts in the presence of basic catalyst were studied at temperatures 323-353 K. The reactions were found to be of the first order with respect to oxirane, sulfide, and catalyst concentrations. The kinetics are consistent with a termolecular mechanism.
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  • 290
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 291
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 292
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    International Journal of Chemical Kinetics 21 (1989), S. 1003-1014 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of the gas-phase thermal decomposition of 1,1,2,2-tetrafluorocyclopropane (TFC) to 1,1-difluoroethylene and CF2 was studied in the temperature range of 507.0-577.0 K and with a total pressure of 200 to 300 torr of a 1:100 mixture of reactant and C2H4. Also at 557.0 K experiments were made at different total pressures, in the range 2-20 torr with neat TFC and between 20-300 torr with the C2H4/TFC mixture, confirming that the reaction is in the high pressure limit. The reaction is first-order and the rate constants fit the following Arrhenius relationship: \documentclass{article}\pagestyle{empty}\begin{document}$$\log \,k/(s^{ - 1}) = (14.02 \pm 0.16) - (45,150 \pm 200)/4.576T$$\end{document} From this value of the activation energy, the data for the decomposition of chemically activated TFC were revised. The new results yield a minimum energy of the activated molecule of 98 ± 4 kcal/mol and ΔHf°(TFC) = -155.4 ± 7 kcal/mol, while an analysis of the kinetic data yields ΔHf°(TFC) = -159 ± 9 kcal/mol.
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  • 293
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    International Journal of Chemical Kinetics 21 (1989), S. 1029-1047 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rate of V → R, T energy relaxation following pulsed ir laser excitation is measured by employing an optoacoustic single pulse method. Under present experimental conditions the operation of convolution applies. The experimental optoacoustic waveform can be viewed as the convolution of the kinetic relaxation waveform with an optoacoustic waveform obtained under very fast energy relaxation conditions. A discrete Fourier transform deconvolution method is applied to optoacoustic measurements on SF6 in argon to obtain the time constant, τ, for energy transfer. The present method gives τP = 182 ± 15 μs torr, in good agreement with other methods. These results were obtained without requiring either a theoretical description of the pressure waveform or an assumed laser irradiation geometry. For convolution to apply, the differential equation describing the pressure pulse must be linear under the conditions of the experiment. The linearity of the system can usually be tested experimentally.
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  • 294
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 295
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    International Journal of Chemical Kinetics 21 (1989), S. 1113-1122 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using Fourier transform infrared spectroscopy, the ethene yield from the reaction of C2H5 radicals with O2 has been determined to be 1.50 ± 0.09%, 0.85 ± 0.11%, and 〈0.1% at total pressures of 25, 50, and 700 torr, respectively. Additionally, the rate constant of the reaction of C2H5 radicals with molecular chlorine was measured relative to that with molecular oxygen. A ratio k6/k7 = 1.99 ± 0.14 was measured at 700 torr total pressure which, together with the literature value of k7 = 4.4 × 10-12 cm3 molecule-1s-1, yields k6 = (8.8 ± 0.6) × 10-12 cm3 molecule-1s-1. Quoted errors represent 2σ. These results are discussed with respect to previous kinetic and mechanistic studies of C2H5 radicals.
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  • 296
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    International Journal of Chemical Kinetics 21 (1989), S. 1161-1172 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reactions Br + NO2 + M → BrNO2 + M (1) and I + NO2 + M → INO2 + M (2) have been studied at low pressure (0.6-2.2 torr) at room temperature and with helium as the third body by the discharge-flow technique with EPR and mass spectrometric analysis of the species. The following third order rate constants were found k1(0) = (3.7 ± 0.7) × 10-31 and k2(0) = (0.95 ± 0.35) × 10-31 (units are cm6 molecule-2 s-1). The secondary reactions X + XNO2 → X2 + NO2 (X = Br, I) have been studied by mass spectrometry and their rate constants have been estimated from product analysis and computer modeling.
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  • 297
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    Keywords: Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology
    Notes: Calculations were carried out on several data sets to study the mechanism of hydrogen abstraction from phenols by peroxy radicals: Rate constants, k values, were collected for the reactions of cumyl-, 1-phenylethyl- and tert-butyl-peroxy radicals with ortho-para-substituted phenol inhibitors. The rate constants were recalculated for the same temperature. Solvent effects were neglected because the solvents used were similar in nature. The phenol ortho substituents were characterized by an indicator variable ItBu accounting for the presence or absence of di-tert-butyl groups. The phenol para substituents were characterized by Charton's σI, σR, and σR+ substituent constants.The dependence of log k values on Itbu, σI, σR, σR+ was investigated using stepwise linear regression analysis. The combined data set of 32 reactions gives: \documentclass{article}\pagestyle{empty}\begin{document}$$\log \,\,k_{(333{\rm K)}} = - 0.801\sigma _I - 2.483\sigma _{\rm R} + 3.766\,\,\,\,\,\,\,\,\,(r = 0.851)$$\end{document} and \documentclass{article}\pagestyle{empty}\begin{document}$$\log \,\,k_{(333{\rm K)}} = - 0.932\sigma _1 - 2.302\sigma _R^ + + 3.802\,\,\,\,\,\,\,\,\,(r = 0.848)$$\end{document}The results suggest that hydrogen abstraction from phenols by peroxy radicals proceeds by an electrophilic mechanism, and that neither the peroxy-radical nor the ortho-di-tert-butyl groups have considerable effect on the rate of reaction (1).
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  • 298
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    Topics: Chemistry and Pharmacology
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  • 299
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    International Journal of Chemical Kinetics 21 (1989), S. 909-922 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The thermochemical kinetics formulation of conventional transition state theory for bimolecular reactions allows for a separate contribution from each degree of freedom (translation, rotation, vibration, etc.) in the activated complex to the entropy and heat capacity of activation, and thus to the preexponential terms in the Arrhenius rate expression, k = ATn exp(-B/T). The number of vibrations and (possibly hindred) internal rotations varies depending on the nature of the reaction: atom + diatom, diatom + linear polyatom, etc. The temperature exponent n can be evaluated explicitly for each type of reaction if the harmonic oscillator-rigid free rotor approximation is valid for the reagents and activated complex and if the contribution from tunneling is small. Various reaction types are examined successively, and n is evaluated for each case. The possible contributions of other factors (vibrational anharmonicity, hindered internal rotation, tunneling, “looseness” of activated complex) to the value of n are also considered.
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  • 300
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    International Journal of Chemical Kinetics 21 (1989), S. 51-61 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have carried out a kinetic study of the 4-pyridinecarboxaldehyde plus n-hexylamine system, at 25°C, in water-dioxan mixtures (0-60% v/v) and in the pH range pKa + 1.5 〉 pH 〉 pKa - 1.5, where pKa is the pK value of the conjugate acid of the amine. The results obtained could be interpreted in terms of a rate constant for Schiff's base hydrolysis and a rate constant for the reaction between the nonprotonated n-hexylamine and the nonhydrated form of 4-pyridinecarboxaldehyde. Both constants decrease sharply as the dioxan content of the solvent increases, in a manner consistent with Marshall's model [J. Phys. Chem., 74, 346 (1970)]. It is suggested that the transition state of the rate-limiting step (carbinolamine dehydration) is highly solvated by water molecules and has a high separation of charges.
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