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  • 1990-1994  (1,155)
  • 1994  (662)
  • 1991  (493)
  • Computational Chemistry and Molecular Modeling  (902)
  • crystal structure
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Years
  • 1990-1994  (1,155)
Year
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Journal of chemical crystallography 24 (1994), S. 759-762 
    ISSN: 1572-8854
    Keywords: Sulfonamide ; methanesulfonanilide ; crystal structure ; molecular structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract The title compound, crystallizes in the triclinic space group $$P\bar 1$$ witha=8.232(4),b=9.159(2),c=10.230(3)Å. α=74.07(3)°, β=72.50(4)°, γ=63.65(3)° andZ=2. The structure was solved by direct methods and refined by full matrix least squares methods toR=0.054 for 1817 observed reflections. The plane containing the nitrogen and sulfur atoms is perpendicular to the aromatic plane. One of the S−O bonds in each methanesulfonyl group is in nearly eclipsed conformation with the N−C bond.
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of chemical crystallography 24 (1994), S. 437-440 
    ISSN: 1572-8854
    Keywords: Ca(C4H4O4)·H2O ; pentagonal pyramid ; calcium succinate ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract The crystal structure of calcium succinate monohydrate, Ca(C4H4O4)·H2O, has been determined by single crystal X-ray diffraction. The crystals are monoclinic witha=11.952(2),b=9.691(2),c=11.606(2)Å, β=108.81(1)°, space group C2/c,Z=8,V=1272.49 Å3,d m =1.80, andd c =1.818 Mg m−3. The structure was refined by full-matrix least-squares techniques toR=0.027,R w =0.040, for 829 reflections with1≥3δ(I). Ca is coordinated to seven oxygen atoms, and the coordination polyhedron is best described as a pentagonal bipyramid. One carboxylate group in the succinate ion is bonded to three different Ca ions, forming a four-membered chelate ring with one Ca ion is bonded to three different Ca ions, forming a four-membered chelate ring with one Ca ion and unidentate bridge bonds to two other Ca ions. The other carboxylate group is bonded to two Ca ions through unidentate bonds. The structure is highly polymeric. The general structural features are nearly identical to those of calcium adipate monohydrate.
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  • 3
    ISSN: 1572-8862
    Keywords: Tungsten ; isomeric forms ; crystal structure ; triple bonds ; interconversion
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstract A thorough study of compounds with the formula W2Cl4(NHCMe3)2(PR3)2, withR 3=Me3, Et3, Prg n 3 Me2,Ph, is reported. In addition to the previously reported crystalline compounds, namely Ia,trans-W2Cl4(NHCMe3)2(PMe3)2 in space group Pmmn;3a,trans-W2Cl4(NHCM3)2(PEt3)2 in space group P21/a (or P21/c); and4,cis-W2Cl4(NHCMe3)2(PMe2Ph)2 in Pna21, we have obtained and structurally characterized the following new substances,1b,trans-W2Cl4,(NHCMe3)2(PMe2)2, space group P21/c,a= 12.233 (4) Å,b= 12.872 (4) Å,c=17.095 (5) Å,β=93.52 (2)°,Z=4,V=2687 (1) Å3 2,cis-W2Cl4(NHCMe3)2(PMe3)2, P21/c,a=9.673 (4) Å,b=17.249 (4) Å,c=16.244 (5) Å,β=99.63 (3),Z = 4 ,V=2669 (1) Å.3b,trans-W2Cl4(NHCMe3)2(PEt3)2, Pl,a=16.850 (3) Å,b=17.797 (3) Å,c= 11.459 (2)Å,α= 101.02 (1),β= 103.13°, y=84.23 (1)°,Z=4,V= 3279 (1) Å5,trans-W2Cl4(NHCM3)2(PMe2Ph)2, Fdd2,a=39.563 (8) Å at 20°C; 39.325 (10) Å at -6O°C,b = 57.543 (17) Å at 20°C; 57.186 (16) Å at -60°C,c= 8.810 (1) Å at 20°C; 8.770 (1) Å at - 60°C ,Z=24,V=20057 (7) Å3 (20°C), 19723 (8) Å3 ( - 60°C) .6,trans-W2Cl4(NHCMe3 2(PPrn 3)2, Pl,a= 17.287 (2) Å (20°C); 17.077 (5) Å (-60°C),b= 19.119 (2) Å (20°C); 18.952 (6) Å (-60°C),c= 12.713 (1) Å (20°C); 12.668 (4) Å (-60°C),Z=4,V= 3980 (1) Å3 (20°C), 3898 (2) ,Å3 ( - 60°C). In addition, the structure of3a was re-determined and refined so that the disorder ratio was a refined parameter, leading to a value of 0.520:0.480 instead of being arbitrarily fixed at 0.50:0.50. In all of the structures the molecules are held in eclipsed (but very distorted) rotational conformations and the W-W distances are all within the range of 2.305-2.330 Å. As will be shown in a later paper, for all phosphines, thecis andtrans isomers are of similar stability and an equilibrium mixture exists in solution. It is also shown that1a and3a do not contain unexpectedly short W-N bonds as previously reported.
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  • 4
    ISSN: 1572-8862
    Keywords: Mixed metal cluster ; alkyne ; diphenylacetylene ; platinum ; osmium ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstract The new platinum-osmium alkyne cluster complex Pt2Os4(CO)8(μ3-PhC2Ph)3 (μ 4-PhC2Ph),2, was obtained from the reaction of Pt2Os4(CO)18,1b, with PhC2Ph and was characterized by IR.1H NMR and single-crystal X-ray diffraction analyses. The cluster of compound2 consists of an osmium capped Pt2Os3 square pyramid. It aLso contains three triply bridging and one quadruply bridging diphenylacetylene ligands. Crystal data for2: space group PI,a = 12.530(2) Å,b = 21.565(4) Å,c = 11.284(2) Å,α = 100.31(2),β = 111.89(1),β = 76.78(2),Z = 2, 3879 reflections,R = 0.032.
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Journal of chemical crystallography 24 (1994), S. 731-737 
    ISSN: 1572-8854
    Keywords: Synthesis ; crystal structure ; IR data
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract The synthesis, crystal structure and IR data are reported for Na2[Zn(CMA)4]·2EtOH·7H2O, where CMA− is the 9,10-dihydro-9-oxo-10-acridinacetate ion. The complex crystallizes in the monoclinic space group P2/n, with cell dimensionsa=17.335(9),b=8.440(5),c=21.875(12) Å, β=91.94(5)°,Z=2. The structure was solved by direct methods and refined to a finalR value of 0.0363 for 3022 non-zero reflections. The Zn2+ ion occupies twofold axis and is coordinated to four carboxylate ligands, the ZnO4 tetrahedron is considerably distorted with Zn−O distances of 1.978(3) and 1.961(3)Å. Each Na+ cation interacts with two water, one ethanol, and three carboxylate O atoms comprising distorted octahedron. The Zn2+ and Na+ cations are linked through monooxygen and syn-syn carboxylate bridges forming a trinuclear, mixed-metal cluster. The Zn...Na separation is 3.267(2)Å and Na...Na distance equals 3.520(2)Å. All oxygen bonded H-atoms are utilized in hydrogen bonds. The acridone rings overlap in the crystal with the 3.5 Å interlayer separations. The compound has been characterized by IR spectroscopy.
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  • 6
    ISSN: 1572-8854
    Keywords: Pyrimidine ; uracil ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract A new and easy method for the preparation of 1,3,7,9-tetramethylpyrido-[2,3-d∶6,5-d′]-dipyrimidine-2,4,6,8-tetrone is described. The structure of this compound has been solved by means of X-ray diffraction methods. The chemical characterization by spectral (mass, ultraviolet, infrared, and proton nuclear magnetic resonance) and thermal (thermogravimetry and differential scanning calorimetry) method is also reported. The compound is monoclinic, space groupP21/c,a=12.720(5),b=13.688(7),c=8.079(2) Å, β=107.06(4)°,Z=4. The structure consists of discrete tricyclic molecules, stacking playing an important role in crystal packing.
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  • 7
    ISSN: 1572-8854
    Keywords: Centrosymmetric ; symmetry ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract The title compound crystallizes in the centrosymmetric triclinic space group $$P\bar 1$$ (C 1 l ; No.2) witha=9.9143(10) Å,b=10.2616(11) Å,c=10.7715(10) Å, α=113.887(8)°, β=109.197(8)°, γ=90.699(9)°,V=932.78(17) Å3 andZ=1. A total of 4869 data were collected and merged to a set of 2450 independent reflections; the structure was solved and refined toR=1.42% andwR=1.94%. The molecule lies on a site of $$\bar 1$$ symmetry and is disordered, with obvious scrambling of carbonyl and chloride ligands. Resulting bond lengths include Ir−P=2.339(1) Å, Ir−Cl=2.398(4) Å and Ir−CO=1.808(15) Å.
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  • 8
    ISSN: 1572-8862
    Keywords: Mixed metal ; platinum ; ruthenium ; alkyne ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics , Physics
    Notes: Abstarct The ten metal cluster complex Pt2Ru8(CO)23(µ3−H)2, 1 was found to react with EtC2Et to form a new ten metal tris-alkyne complex Pt2Ru8(CO)18(µ3−EtC2Et)2 (µ4−EtC2Et),2 in 35% yield. Complex 2 was characterized by IR,1H NMR , and single crystalx-ray diffraction analyses. The cluster can be viewed as a dodecahedron of eight metal atoms capped with two ruthenium carbonyl groups, two triply bridging EtC2Et ligands and one quadruply bridging EtC2Et ligand. Application of the standard electron counting procedures indicate that this is an unusual complex in which the 18 electron rule applies and the polyhedral skeletal electron pair theory does not. Crystal Data for 2 2.0.5 CH2CI2: space group = P21,a = 12.759(2) A,b=18.438(2)Å,c = 20.197(3) Å,β = 91.59(1)°, Z. = 4, 6394 reflections,R = 0.037.
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  • 9
    ISSN: 1572-882X
    Keywords: cellulose I ; molecular mechanics ; crystal structure ; molecular ; modelling
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Energies for various trial packing arrangements of unit cells for the Iα and Iβ phases of native cellulose discovered by Sugiyamaet al. were evaluated. Both a rigid-ring method, PLMR, and the full-optimization, molecular mechanics program, MM3(90), were used. For both phases the models that had the lowest PLMR energy also had the lowest MM3 energy. Both calculated models have the chains packed ‘up’, O6s intg positions, and the same sheets of hydrogen-bonded chains. The Iβ structure model is essentially identical to that proposed previously for ramie cellulose by Woodcock and Sarko. It is also the same as the best parallel model previously proposed that was based on the X-ray data of Mann, Gonzalez and Wellard, once the various unit cell conventions are considered. Also, the energies from both methods for all three celluloses, Iα, Iβ and II, are in the order that rationalizes their relative stabilites.
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  • 10
    ISSN: 1572-9605
    Keywords: High-Tc superconductivity ; La1.9Bi0.1CuO4+δ ; excess oxygen ; crystal structure ; superconducting transition temperature
    Source: Springer Online Journal Archives 1860-2000
    Topics: Electrical Engineering, Measurement and Control Technology , Physics
    Notes: Abstract We have investigated the relation between the crystal structure and superconductivity in La1.9Bi0.1CuO4+δ , in which the phase separation observed in La2CuO4+δ is suppressed. A phase diagram in theT−δ plane is given for La1.9Bi0.1CuO4+δ with excess oxygen. For very smallδ values, the crystal structure is orthorhombic, and an orthorhombic-tetragonal phase transition occurs markedly atδ ∼ 0.03 in the measured temperature range between 13 and 293 K. Superconductivity is observed in the range of 0.04〈δ〈0.11. This is clear evidence thathigh-T c superconductivity also appears in the tetragonal phase.
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  • 11
    Electronic Resource
    Electronic Resource
    Springer
    Il nuovo cimento della Società Italiana di Fisica 16 (1994), S. 1671-1678 
    ISSN: 0392-6737
    Keywords: Effects of material synthesis ; crystal structure ; chemical composition ; Y-based compounds ; Conference proceedings
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Summary YBCO with high granulometric perfection and low dispersion can be obtained by a low-temperature reaction (≈800°C) of atomic-scale dispersed powders, produced through the thermal decomposition of liquid precursors. As reacted such powders are tetragonal and not superconducting, but they transform into the high-T c phase after optimized annealing treatments. We describe the method we developed and the characteristics of the materials we achieved, and we discuss the main features of the process in the light of the current know-how.
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  • 12
    ISSN: 1572-9001
    Keywords: Isocinchomeronic acid ; 2,5-pyridinedicarboxylic acid ; hydrogen isocinchomeronate ; manganese(II) complex ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The reactions between Mn(II), Co(II), Ni(II), and Zn(II) ions with isocinchomeronic acid (H2-isocin) afforded complexes of the general formula M(H-isocin)2-2H2O, whereas Fe(II) gives both red and deep red-brown products of the same formula. Various physical measurements suggest that the complexes of M = Co, Ni, Zn, and Fe (brown) are octahedrally coordinated by two aqua ligands and twotrans-N,O-bidentate H-isocin− anions with dimeric hydrogen bonding. Those for M = Mn and Fe (red) are the correspondingcis isomers. The structure of the manganese complex as determined by X-ray crystallography exhibitsC 2 molecular symmetry with Mn-N = 2.279(2), Mn-O(H-isocin)− = 2.196(2), and Mn-O(aqua) = 2.137(2) Å. Each aqua ligand forms two donor O-H ⋯ O hydrogen bonds with carboxy groups of different molecules in adjacent chains.
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  • 13
    ISSN: 1572-9001
    Keywords: tris(pyrazol-1-yl)-s-triazine ; crystal structure ; electron diffraction ; AM1 semiempirical calculation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The conformation of the TPT molecule has been analyzed using experimental and computational techniques. The solid-state molecular structure shows similar conformational features to those in the 2-pyrimidine and phenyl derivatives although a different pattern of bond angles in the triazine ring was observed. The AM1 calculations predicted two conformations of comparable stability (ΔE=1.8 kcal/mol) differing in the orientation of one pyrazole ring. While the minimum energy conformation corresponds to a model displayingC 3h symmetry (φ 1=φ 2=φ 3=0°), the other minimum (φ 1=φ 2=0°,φ 3=180°) is close to that observed in the solid state. The electron diffraction results are consistent with a planar or nearly planar conformation in agreement with the preceding studies.
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  • 14
    Electronic Resource
    Electronic Resource
    Springer
    Journal of sol gel science and technology 1 (1994), S. 113-121 
    ISSN: 1573-4846
    Keywords: crystal structure ; complexing agent ; TiO2 ; TiO2-SiO2
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Many types of TiO2-SiO2 (Ti:Si=50:50 mol%) were prepared by the sol-gel procedure with and without 2-methyl-2, 4-pentanediol (MPD) as an organic ligand. The effect of MPD on the gel structure and the properties of the TiO2 crystals were studied by XRD and raman spectroscopy, and the effect of the sol standing time on the properties of the TiO2 crystals were also studied by XRD spectroscopy. In the gels with MPD, anatase of TiO2 appeared at approximately 580°C, and the crystal structures were similar despite the difference in the gel preparation procedure. The titania gels with MPD were presumed to be dispersed in the silica gel matrix without any Ti-O-Si bond. In the presence of MPD, the formation of titania gels is controlled and the specified TiO2 crystal is produced.
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  • 15
    ISSN: 1573-9171
    Keywords: C60·2S8 ; fullerene complexes ; synthesis ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The C60·2S8 complex was prepared by reaction of buckminsterfullerene C60 with sulfur in trichloroethylene and its single-crystal X-ray structure was studied at room temperature. Crystals of this compound are monoclinic, space groupC 2/c, a=20.90(1),b=21.10(1),c=10.537(9) Å, β=111.29(7)°,Z=4,d calc=1.89 g·cm−3. The crystal structure of the C60·2S8 complex consists of packed fullerene molecules that form hexagonal channels along thec axis with eight-membered crown-shaped S8 cyclic molecules inside the channels. The distances between the centers of neighboring fullerene molecules are 10.036(7), 10.636(7), and 10.537(9) Å. Each C60 molecule is linked to eight S8 molecules with ten shortened intermolecular contacts C...S 3.41(1)–3.52(2) Å. The average values of the C=C and C-C bond lengths are 1.32(3) and 1.47(3) Å, which attest to a significant degree of localization of electron density in the c60 molecule.
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  • 16
    ISSN: 1573-904X
    Keywords: ephedrine ; pseudoephedrine ; salicylate ; chirality ; salt formation ; homochiral crystal ; racemic compound ; racemic conglomerate ; crystal structure ; conformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The physicochemical properties and crystal structures of the crystalline salts formed by the interaction of an achiral anion, salicylate, with homochiral and racemic ephedrinium and pseudoephedrinium cations were determined. The interaction of ephedrinium or pseudoephedrinium with salicylate in aqueous solution yielded crystalline salts with the notable exception of homochiral ephedrinium. Evaporation of the solvent from solutions of homochiral ephedrine and salicyclic acid in various organic solvents, as well as grinding together solid homochiral ephedrine and solid salicylic acid, yielded viscous semisolids suggesting that homochiral ephedrinium salicylate has a low melting point and/or a high aqueous solubility. Mixing of the two viscous solids, obtained by grinding each of the opposite enantiomers of ephedrine with equimolar salicylic acid, resulted in the formation of racemic ephedrine and subsequently, upon heating, in the formation of racemic ephedrinium salicylate. While racemic ephedrinium salicylate exists as a crystalline compound (P21/n space group) with an equal number of opposite enantiomers in the unit cell, its diastereomer, racemic pseudoephedrinium salicylate, exists as a conglomerate, i.e. a physical mixture, of the homochiral crystals of the opposite enantiomers (each P21 space group). The inability of homochiral ephedrinium to exist as a crystalline salicylate salt at 20–25°C is attributed to its high energy conformation and/or to the poor packing of homochiral ephedrinium salicylate molecules in the crystal lattice.
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  • 17
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 20 (1994), S. 53-71 
    ISSN: 1573-1111
    Keywords: Lithium ionophores ; podand ; dicyclohexylamides ; Li-complex ; crystal structure ; X-ray analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The influence of structure and lipophilicity of dicyclohexylamides on the lithium selectivity in membrane electrodes is discussed. The crystal structures of the triamide podand1 and its complex with LiBr1b has been determined by X-ray analysis. Crystal data for ligand1: C48H83O6N3, triclinic,P1,a=10.749(2),b=12.097(3),c=19.123(6)Å, α=95.76(2),β=80.06(2), γ=100.27(2)0,V=2403(1) Ã3,Z=2. Crystal data for the lithium complex1b: C48H83O6N3·LiBr·x C2H5OH, monoclinic,P2 1/c,a=21.297(6),b=16.316(8),c=19.450(4) Å,β=110.87(2)0,V=6315(3) Å3,Z=4. In the complex the ligand adopts a conformation in which oxygen binding sites surrounding the Li+ cation form a slightly distorted trigonal prism.
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  • 18
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Proteins: Structure, Function, and Genetics 20 (1994), S. 149-166 
    ISSN: 0887-3585
    Keywords: crystal structure ; cold adaption ; catalytic efficiency ; protein stability ; anionic ; ectotherm ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: The crystal structure of an anionic form of salmon trypsin has been determined at 1.82 Å resolution. We report the first structure of a trypsin from a phoikilothermic organism in a detailed comparison to mammalian trypsins in order to look for structural rationalizations for the cold-adaption features of salmon trypsin. This form of salmon trypsin (T II) comprises 222 residues, and is homologous to bovine trypsin (BT) in about 65% of the primary structure. The tertiary structures are similar, with an overall displacement in main chain atomic positions between salmon trypsin and various crystal structures of bovine trypsin of about 0.8 Å. Intramolecular hydrogen bonds and hydrophobic interactions are compared and discussed in order to estimate possible differences in molecular flexibility which might explain the higher catalytic efficiency and lower thermostability of salmon trypsin compared to bovine trypsin. No overall differences in intramolecular interactions are detected between the two structures, but there are differences in certain regions of the structures which may explain some of the observed differences in physical properties. The distribution of charged residues is different in the two trypsins, and the impact this might have on substrate affinity has been discussed. © 1994 Wiley-Liss, Inc.
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  • 19
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Proteins: Structure, Function, and Genetics 19 (1994), S. 4-13 
    ISSN: 0887-3585
    Keywords: trichosanthin ; ribosome-inactivating proteins ; crystal structure ; orthorhombic ; molecular replacement ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: Trichosanthin (TCS) is one of the single chain ribosome-inactivating proteins (RIPs). The crystals of the orthorhombic form of trichosanthin have been obtained from a citrate buffer (pH 5.4) with KC1 as the precipitant. The crystal belongs to the space group P212121 with a = 38.31, b = 76.22, c = 79.21 Å. The structure was solved by molecular replacement method and refined using the programs XPLOR and PROLSQ to an R-factor of 0.191 for the reflections within the 6-1.88 Å resolution range. The bond length and bond angle in the protein molecule have root-mean-square deviations from ideal value of 0.013 Å and 3.3°, respectively. The refined model includes 247 residues and 197 water molecules. The TCS molecule consists of two structural domains. The large domain contains six α-helices, a six stranded sheet, and an antiparallel β-sheet. The small domain has a largest α-helix, which shows a distinct bend. The possible active site of the molecule located on the cleft between two domains was proposed. In the active site Arg-163 and Glu-160, Glu-189 and Arg-122 form two ion pairs, Glu-189 and Gln-156 are hydrogen bonded to each other. Three water molecules are bonded to the residues in the active site region. The structures of TCS molecule and ricin A-chain (RTA) superimpose quite well, showing that the structures of the two protein molecules are homologous. Comparison of the structures of the TCS molecule in this orthorhombic crystal with that in the monoclinic crystal indicates that there are no essential differences of the structures between the two protein crystals. © 1994 Wiley-Liss, Inc.
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  • 20
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 17 (1994), S. 137-148 
    ISSN: 1573-1111
    Keywords: Clathrate hydrate ; phase diagram ; crystal structure ; tetraisoamylammonium fluoride
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The phase diagram of the binary (i-C5H11)4NF-water system has been studied in the clathrate formation region. Three polyhydrates have been discovered, two of which (1∶38.9 and 1∶32.7) are the known orthorhombic and tetragonal phases:Pbmn,a=11.88,b=21.53,c=12.70 Å,ρ means=1.019 g cm-3 (0°C), m.p.=32.4°C andP42/m, a=23.729,c=12.466 Å,ρ means=1.062 g cm-3, (0°C), m.p.=31.2°C, respectively. A single crystal X-ray analysis of the novel clathrate hydrate (i-C5H11)4NF·27 H2O is reported. This new clathrate hydrate is tetragonal,I4I/a, witha=16.894(5),c=17.111(2) Å,Z=4, (−50°C), and m.p.=34.6°C. Each (i-C5H11)4N+ cation occupies a four-chamber cavity built of 15-hedra 71635942 (idealized description), with small vacant 5444 cavities filling the intervening space.
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  • 21
    Electronic Resource
    Electronic Resource
    Springer
    Journal of inclusion phenomena and macrocyclic chemistry 17 (1994), S. 187-201 
    ISSN: 1573-1111
    Keywords: β-Cyclodextrin ; sulfathiazole ; inclusion complex ; crystal structure ; thermal analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract An inclusion complex with the formula (β-cyclodextrin) (sulfathiazole) 8.3 H2O has been crystallized and characterized by physicochemical methods including single crystal X-ray analysis. The complex crystallizes in the monoclinic system, space group P21, witha=15.264(4),b= 16.500(6),c=15.559(5) Å,β=117.29(3)o andZ=2. The structure was solved using published co-ordinates forβ-cyclodextrin in an isomorphous complex. Refinement by block-diagonal leastsquares yieldedR=0.061 for 4706 unique observed reflections. Inclusion of sulfathiazole produces a slight ellipticity in the host conformation, but the guest adopts a conformation similar to that observed in its polymorphs. The guest is held in the macrocyclic cavity predominantly by hydrophobic forces, with the phenyl ring near the host primary hydroxyl side and the thiazole ring near the secondary hydroxyl side. The complex packs in layers parallel to theac-plane. Layers are linked by hydrogen bonding to water molecules which are located outside the cyclodextrin cavity. An extensive network of hydrogen bonds mediated chiefly by water molecules stabilizes the crystal structure.
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  • 22
    ISSN: 1573-1111
    Keywords: Gossypol ; complex ; crystal structure ; single crystal ; desolvation ; polymorph
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The structures of gossypol complexes are extremely sensitive to the halogenomethane present as the guest; e.g. changing the number of Cl atoms in chloromethane derivatives changes the structure of the gossypol complex. The crystals of C30H30O8·CH2Cl2 are monoclinic, space groupC2/c,a=21.320(4),b=19.199(6),c=15.765(2)Å, β=113.05(2)o,V=5916(2)Å3,Z=8,D x=1.35 g/cm3,T=295 K. The structure has been solved by direct methods and refined to the finalR value of 0.084 for 1828 reflections. In the structure H-bonded gossypol molecules form columns, generating channels in the structure which are filled by guest molecules. After decomposition (desolvation) monocrystals of the complexes are conserved without destruction, in which there are rather wide and empty channels though slightly smaller than in the complex. An attempt is made to explain some peculiarities of the behavior of the gossypol polymorph formed on the basis of its structure with empty channels.
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  • 23
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    Journal of inclusion phenomena and macrocyclic chemistry 17 (1994), S. 365-376 
    ISSN: 1573-1111
    Keywords: Gossypol ; inclusion compounds ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structure of a compound obtained in a condensation reaction of (±)-gossypol with (R)-(+)-phenylethylamine has been determined by X-ray structure analysis. The crystals of C46H48O6N2·(C4H8O2)2 are monoclinic, space groupP21,a=21.243(3),b=8.666(1),c=28.651(4) Å, β=108.24(1)0,V=5009(3) β3,Z=4,D x=1.195 g cm−3, μ(CuK α)=0.66 mm−1,T=292 K. The structure has been solved by direct methods and refined to the finalR value of 0.091 for 4290 observed reflections and 1049 parameters. There are two diastereoisomeric molecules of the host and four solvent molecules in the asymmetric unit. The host molecules are H-bonded into chains with diastereoisomeric molecules alternating along the chain. The fact that the host prefers the association mode in which molecules with a different configuration of the 2,2′-binaphthyl moiety are H-bonded explains why separation of diastereoisomeric diaminogossypols by fractional crystallization has been unsuccessful. The 1,4-dioxane molecules are accommodated in infinite channels but only every second guest molecule in a channel is H-bonded to the host.
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  • 24
    ISSN: 1573-1111
    Keywords: D,L-hexapeptide ; cyclic ; crystal structure ; stacks ; tubular ; β-rings ; channels
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract An X-ray analysis of single crystals (from MeOH) of cyclo(-D-Leu-L-MeLeu-D-Leu-L-MeLeu-D-Leu-L-MeLeu-) has been carried out. The analysis reveals that the molecules of the cyclopeptide occur in the crystals with two slightly different, almost hexagonal backbone conformations of the β-type, and that pairs of molecules with the same conformation interact through their nonmethylated face, forming dimeric units (units A and B) with six interannular H-bonds. This kind of pairing reproduces well that expected for a two-ring element in a stack of antiparalleβ-rings. The X-ray analysis has also revealed the presence in the A units of two water molecules, each at one of two equivalent sites located on the 3-fold axis of the units and equidistant from the center of gravity, and the presence in the B units of one water molecule at the center of the units. This provides experimental support for the idea that stacks ofβ-rings can serve as molecular channels.
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  • 25
    ISSN: 1573-1111
    Keywords: Pentaborate ; boric acid ; clathrate ; diamond-related network ; hydrogen bonding ; tetrapropy-lammonium ; tetrabutylammonium ; crystal structure ; 11B MAS NMR ; 13C MAS NMR ; thermogravimetry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Single-crystal X-ray structure analyses of N(nPr)4[B5O6(OH)4][B(OH)3]2,1, and N(nBu)4 [B5O6(OH)4][B(OH)3]2,2, reveal that these materials are novel clathrates, the isotypic host structures of which are three-dimensional assemblies of hydrogen-bonded [B5O6(OH)4]− ionsand B(OH)3 molecules. The assembly of only the pentaborate anions is a distorted (i.e., along [102] elongated) fourconnected diamond-related network. The N(nPr) 4 + and N(nBu) 4 + ions are trapped within the complex three-dimensional channel systems of the host frameworks. Both1 and2 crystallize monoclinically with space groupP21/c andZ=4. The cell constants are:1:a=13.592(5),b=12.082(2),c=17.355(6) Å, β=106.60(2)° (298K);2:a=13.874(3),b=12.585(1),c=17.588(4) Å, β=107.04(1)° (238 K). The results obtained by both11B and13C MAS NMR spectroscopy are discussed. Thermogravimetric studies under a flowing inert-gas atmosphere suggest that water, stemming from polycondensation of the hydrous borate species, is released from the clathrates at ca. 443 K (1) and 398 K (2) before the decomposition of the organic cations starts at ca. 603 K (1) and 603 K (2).
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  • 26
    ISSN: 1573-1111
    Keywords: Calixarenes ; arenetricarbonylchromium ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The structures of three arene-tricarbonylchromium complexes prepared from cone and 1,3-alternate-25, 26,27,28-tetrapropoxycalix[4]arene(1) and Cr(CO)6 were determined by single crystal X-ray studies. Crystal data for 1,3-alternate-1·Cr(CO)3 are space groupP21/a,a=19.496(3)Å,b=11.118(2)Å,c=19.121(2)Å, β=109.95°(1) andV=3895Å3. The structure was refined toRw=0.068. Crystal data for cone-1·Cr(CO)3 are space groupP21/a,a=21.457(4)Å,b=12.184(1)Å,c=14.816(2)Å, β=91.61°(1) andV=3872Å3. The structure was refined toRw=0.077. Crystal data for cone-1·2Cr(CO)3 are space groupP21/a,a=18.019(3)Å,b=41.347(4)Å,c=11.743(2)Å, β=97.39°(1) andV=8676Å3. The single crystal included two similar but slightly different structures but the data were successfully refined toRw=0.092. The structure of 1,3-alternate-1·Cr(CO)3 differs only slightly from that of the regular 1,3-alternate calix[4]arene. In contrast, cone-1·Cr(CO)3 and cone-1·2Cr(CO)3 show an unusual conformation with a pair of faced gablelike roofs, which is considerbly distorted from the regular cone calix[4]arene. The origin of this distortion is discussed in combination with the spectral studies.
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  • 27
    ISSN: 1573-1111
    Keywords: 12-Membered crown ethers ; ion-selective membrane electrodes ; complexes ; crystal structure ; X-ray analysis ; conformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Lipophilic derivatives of benzo-12-crown-4 and naphtho-12-crown-4 have been synthesized. The behavior of the parent compounds and their derivatives in membrane ion-selective electrodes have been studied. Selectivity changes have been observed with the rise in lipophilicity. Crystal structures of the NaI and KI complexes of benzo-12-crown-4 (1 and2) have been determined by X-ray analysis. The alkali metal and iodide ions are in direct contact in2 but not in1. Compound1 [Na(benzo-12-crown-4)2]·I is triclinic, witha=13.368(8),b=10.727(7),c=10.325(4) Å; α=73.56(4),β=77.73(4), γ=108.70(5)°;Z=2, space group is $$P\bar 1$$ . Compound2 [K(benzo-12-crown-4)2·I] is monoclinic, witha=15.807(8),b=12.043(4),c=15.601(6) Å,β=117.74(3)°;Z=4, space groupC2/c. In both compounds the cations interact with all oxygen atoms of two crown ether molecules. Correlation of the crystal structures and behavior of the crown ethers in ion-selective membrane electrodes is discussed.
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  • 28
    ISSN: 1573-9171
    Keywords: organic conductors ; ion-radical salts ; bis(ethylenedithio)tetrathiafulvalene ; mercury iodides ; crystal structure ; electrochemical synthesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A new cation-radical salt (ET)4[Hg2I6] (1), where ET is bis(ethylenedithio)tetrathiafulvalene, has been synthesized in the system ET-HgI3 −-PhCl. An X-ray study of 1 (a=41.02(5),b=23.01(1),c=8.233(2) Å,V=7772(3) Å3, space groupPc21 b,Z=4,d calc=2.308 g cm−3) has established its composition, chemical formula, and the main structural features. The ET cation-radicals are packed in the conducting layer, the type of packing is α″; the [Hg2I6]2− anion has a dimeric structure. The temperature dependence of the conductivity of the (ET)4[Hg2I6] crystals (σ300=6 Ohm−1 cm−1) has a semiconducting character.
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  • 29
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    Russian chemical bulletin 43 (1994), S. 1384-1389 
    ISSN: 1573-9171
    Keywords: synthesis ; macrocyclic thiophenylene ketone ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The side reaction of macrocyclization that occurs during the synthesis of poly-(1,4-phenylenesulfide ketone) by polycondensation of a 4,4-dihalobenzophenone with sodium sulfide was studied. It was found that the major product of this reaction is a cyclic trimer, cyclotris-(4,4"-thiodiphenylene ketone) (1). Despite the fact that ketone bridges are more rigid than sulfide bridges, the yield of the macrocycle is rather high, as it is in the synthesis of poly-(1,4-phenylenesulfide), and reaches 20% under high dilution conditions. The structure of 1 was investigated by X-ray diffraction analysis (R = 0.069 on 3138 reflections). Macrocycle 1 is strongly flattened in the crystal; the conformation observed is determined by the packing, since stereochemical analysis indicates high flexibility of the macrocycle. The solvate acetone molecules incorporated in the crystal are disordered, nevertheless, they are strongly fixed in the cavities and channels of the crystal structure.
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  • 30
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    International Journal of Quantum Chemistry 50 (1994), S. 317-332 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a systematic comparison of the correlation contribution at the level of the second-order polarization propagator approximation (SOPPA) and MP2 to the static dipole polarizability of (1) Be, BeH-, BH, CH+, MgH-, AIH, SiH+, and GeH+; (2) BH3, CH4, NH3, H2O, HF, BF, and F2; and (3) N2, CO, CN-, HCN, C2H2, and HCHO. Fairly extended basis sets were used in the calculations. We find that the agreement with experimental values is improved in SOPPA and MP.2 over the results at the SCF level. The signs and magnitudes of the correlation contribution in SOPPA are similar to those obtained in analytical derivative MP2 calculations. However, it is not possible to say, in general, which method gives the largest correlation contribution or the best agreement with experiment, nor is it possible to make a priori prediction of the sign of the correlation contribution. For the first group of molecules, which have a quasi-degenerate ground state, additional CCDPPA and CCSDPPA calculations were performed and compared with polarizabilities obtained as analytical/numerical derivatives of the CCD and CCSD energies. The CCSDPPA results were found to be in better agreement with other calculations than were the SOPPA results, demonstrating the necessity of using methods based on infinite-order perturbation theory for these systems. © 1994 John Wiley & Sons, Inc.
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  • 31
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    International Journal of Quantum Chemistry 51 (1994), S. 313-318 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio (TZV*, SBK*, and 3-21G* or 6-31G* basis sets) calculations were performed to predict the geometries and gas-phase proton affinities of Li2O, LiOH, LiNH2, Na2O, NaOH, NaNH2, K2O, KOH, and KNH2. © 1994 John Wiley & Sons, Inc.
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  • 32
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    International Journal of Quantum Chemistry 51 (1994), S. 285-291 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To accelerate the convergence of the HH expansion, we modified the HH-GLF method, a new simple hyperspherical harmonic method proposed recently by us, into the CFHH-GLF method. Applications of the CFHH-GLF method to the three-body systems He and e- e- e+ exhibit very fast convergence with number of HH basis sets. With only 36 HH and five GLF, we obtain the ground-state energy of -2.90371 au for He, compared with the exact value of -2.90372 au, and with only 36 HH and 10 GLF, we obtained the ground-state energy of -0.26188 au for e- e- e+, compared with the exact value of -0.26200 au. We formulate the CFHH-GLF method in this article. © 1994 John Wiley & Sons, Inc.
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  • 33
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    International Journal of Quantum Chemistry 52 (1994), S. 147-152 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An iso-energy cutoff scheme is introduced for the calculation of the potential of mean force between two ions in water. The cutoff criterion is based on the optimal interaction of the water dipole with the ion pair, for which analytical expressions are derived. Formulas are also derived to characterize the solvent reorganization contribution to the potential of mean force. Treatment of the contributions from waters outside the cutoff is also discussed. © 1994 John Wiley & Sons, Inc.
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  • 34
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    International Journal of Quantum Chemistry 52 (1994), S. 267-280 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The elongation method, a theoretical tool to synthesize the electronic states of polymers, is applied within the framework of the density functional approach and using a linear combination of Gaussian-type orbitals. In this treatment, the wave function of a cluster is localized and the interaction with an attacking monomer is self-consistently calculated according to the Kohn-Sham equation. The reliability and the applicability of our treatment are examined by the application to a random hydrogen molecule cluster, comparing the results with those obtained by the usual diagonalization method for the whole system. The results show that this treatment efficiently provides the electronic states of the end part of aperiodic polymers. © 1994 John Wiley & Sons, Inc.
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  • 35
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    International Journal of Quantum Chemistry 52 (1994), S. 301-308 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new approach to the description of the formation of spherulites in a polymer solution is proposed. It is based on an analytical scheme that takes into account the mass conservation law as a fundamental evolution equation. Three physically interesting cases are considered, both which, on deterministic and stochastic levels, can reflect an asymptotic behavior characteristic for spherulites, namely, R(t) ∝ t, where R(t) is a radius of the spherulite measured at instant t. A few examples of systems similar to that under study are mentioned. © 1994 John Wiley & Sons, Inc.
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  • 36
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    International Journal of Quantum Chemistry 52 (1994), S. 309-319 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An elongation method, which had already been proposed to calculate the electronic structure of aperiodic polymer efficiently, was applied to atactic polypropylene, with the approximation level of the extended Hückel method. The atomic populations thus calculated were found to be dependent sensitively on the tacticity of the polymer. Next, this elongation method was applied to the π-electron stacking system composed of ethylene and butadiene, etc. Excellent agreement was found between the elongation method and the usual extended Hückel calculations. Thus, the elongation method can confidently be applied to π-electron molecular crystal systems. Finally, the local density of states of polyacetylene with both cis-transoid and trans-cisoid structures was calculated. We found that the site with large local density of state in the valence band of a polymer chain gives large electron transfer to the site with large local density of state in the conduction band of another polymer chain. © 1994 John Wiley & Sons, Inc.
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  • 37
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    International Journal of Quantum Chemistry 52 (1994), S. 395-412 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Structural and electronic properties of hydrogen-bonded infinite chains of hydrogen cyanide and formamide molecules have been investigated by the ab initio crystal orbital method using several, partly highly polarized, atomic basis sets of increasing size at the Hartree-Fock (HF) level and by including electron correlation effects in the second order of Møller-Plesset perturbation theory. The results obtained show that hydrogen bonding in molecular crystals of the type investigated is a highly cooperative phenomenon, both from the structural and energetic points of view. Comparison with clusters of up to four monomers demonstrate how various structural parameters converge toward their limiting values in the infinite system. The results obtained for infinite HCN chains show an excellent agreement with those observed for solid HCN, whereas the infinite formamide chain proves to be a reasonable model for the corresponding liquid phase. © 1994 John Wiley & Sons, Inc.
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  • 38
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    International Journal of Quantum Chemistry 52 (1994), S. 413-423 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The many-electron system in one and two dimensions are studied within the geminal approach. The analytical expressions for the wave functions and ground-state energies are obtained for a number of 1-D and 2-D systems: conjugated polymers, organic conductors, 2-D conductors with square lattices, and others. It is shown that electron excitations of a kink type can exist in 2-D systems with mixed valency. In this case, the correlation pairing of current carriers arises as a result of correlation effects leading to superconducting properties of the system. © 1994 John Wiley & Sons, Inc.
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  • 39
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    International Journal of Quantum Chemistry 52 (1994), S. 425-435 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The multiparticle correlation expansion for the entropy of a classical monatomic liquid is presented. This entropy expresses the physical picture in which there is no free particle motion, but, rather, each atom moves within a cage formed by its neighbors. The liquid expansion, including only pair correlations, gives an excellent account of the experimental entropy of most liquid metals, of liquid argon, and of the hard-sphere liquid. The pair correlation entropy is well approximated by a universal function of temperature. Higher-order correlation entropy, due to n-particle irreducible correlations for n ≥ 3, is significant in only a few liquid metals, and its occurrence suggests the presence of n-body forces. When the liquid theory is applied to the study of melting, we discover the important classification of normal and anomalous melting, according to whether there is not or is a significant change in the electronic structure upon melting, and we discover the universal disordering entropy for melting of a monatomic crystal. Interesting directions for future research are extension to include orientational correlations of molecules, theoretical calculation of the entropy of water, application to the entropy of the amorphous state, and correlational entropy of compressed argon. We clarify the relation among different entropy expansions in the recent literature. © 1994 John Wiley & Sons, Inc.
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  • 40
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    International Journal of Quantum Chemistry 49 (1994) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 41
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    International Journal of Quantum Chemistry 49 (1994), S. 11-19 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Möbius transformations recently proposed for integrating functions with a sharp peak close to a single boundary of integration (H.H.H. Homeier and E.O. Steinborn, J. Comput. Phys. 87, 61, 1990) are used to extend Ruedenberg's algorithm for two-center exchange integrals to cases with very diffuse STOs. © 1994 John Wiley & Sons, Inc.
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  • 42
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    International Journal of Quantum Chemistry 52 (1994), S. 731-765 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The first implementation of the intrinsic reaction coordinate (IRC) method within the density functional theory (DFT) framework is presented. The implementation has been applied to four different types of chemical reactions represented by the isomerization process, HCN = HNC (A); the SN2 process, H- + CH4 = CH4 + H- (B); the exchange process, H· + HX = HX + H· (X = F,Cl) (C); and the elimination process, C2H5Cl = C2H4 + HCl (D). The present study presents for each process optimized structures and calculated harmonic vibrational frequencies for the reactant(s), the transition state, and the product(s) along with the IRC path connecting the stationary points. The calculations were carried out within the local density approximation (LDA) as well as the LDA/NL scheme where the LDA energy expression is augmented by Perdew's and Becke's nonlocal (NL) corrections. The LDA and LDA/NL results are compared with each other as well as the best available ab initio calculations and experimental data. For reaction (D), ab initio calculations based on MP2 geometries and MP4SDTQ energies have been added due to the lack of accurate published post-HF calculations on this process. A detailed discussion is provided on the efficiency of the IRC algorithms, the relative accuracy of the DFT and ab initio schemes, as well as the reaction mechanisms of the four reactions. It is concluded that the LDA/NL scheme affords the same accuracy as does the MP4 method. The post-HF methods seem to overestimate activation energies, whereas the corresponding LDA/NL estimates are too low. The LDA activation energies are even lower than the LDA/NL counterparts. The incorporation of the IRC method into the DFT framework provides a promising and reliable tool for probing the chemical reaction path on the potential energy surfaces, even for large-size systems. IRC calculations by ab initio methods of an accuracy similar to the LDA/NL scheme, such as the MP4 scheme, are not feasible. © John Wiley & Sons, Inc.
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  • 43
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    International Journal of Quantum Chemistry 52 (1994), S. 809-816 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The first discussion of the dynamics of Jahn-Teller systems in terms of the electronic density as the fundamental variable was given by W.J. Clinton in 1960, where the degenerate electronic configuration of a Jahn-Teller molecule was interpreted in terms of the infinite number of ways in which the charge distribution can be oriented for the same energy. The moving nuclear framework serves as the perturbation necessary to define the orientation of the charge density, with no activation energy required to put the charge cloud into motion. Recently, this notion of the electronic charge cloud in a Jahn-Teller molecule sweeping out the potential surface over which the nuclei move has found mathematical expression in our work in terms of a generalized electronic current density in nuclear-coordinate space [N. Sukumar and B.M. Deb, Int. J. Quantum Chem. 40, 501 (1991)]. The introduction of the electronic phase as a function of both electronic and nuclear coordinates, in addition to the electronic density, is a crucial component of this formulation. In the present work, the density-based treatment is extended to the nonadiabatic situation, with the Born couplings interpreted as nonadiabatic currents in parameter space. Abelian and non-Abelian gauge transformations of these currents are discussed. © John Wiley & Sons, Inc.
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  • 44
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    International Journal of Quantum Chemistry 49 (1994), S. 133-134 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 45
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    International Journal of Quantum Chemistry 52 (1994), S. 935-945 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Second-order density functional methods are used to introduce the electron correlation in Hartree-Fock (HF) ab initio electronic energy calculations of three-dimensional potential energy surfaces (PES). We analyze the behavior of these methods in PES calculations by applying them to the Li + FH reaction, which has been considered a prototype of the elementary atom-diatom reactions. This system has been studied also by the usual techniques, allowing a point-by-point (for a total of 317 grid points) comparison for the lowest 2A' adiabatic state. In particular, we compare the results obtained using the HF, Møller-Plesset (MP3 level), and configuration interaction (CISD and MRDCI levels) methods with the corresponding results obtained using the Colle-Salvetti (CS) and Moscardó-San Fabián (MSF) procedures using the HF results as the starting point. We found that the CS and MSF procedures support the prediction of a shallow well in the entrance channel that deepens slightly away from collinearity and disappears for a bond angle Θ 〈 74°. We also found that the constrained saddle-point positions remain essentially constant from Θ = 180°-90° and are clearly in the exit channel as for the MRDCI approach (corresponding to the best results). In conclusion, there is a good overall agreement, but there is a question in which this agreement is less pronounced: the heights of the saddle points including the transition state. In particular, the transition-state height is about 3 kcal/mol higher than the more accurate value obtained with the MRDCI approach. However, the second-order density functional methods have been capable of reducing the HF barrier from 18 to 9 kcal/mol (all of these values obtained by spline interpolation), the latter value being very similar to the CISD result. © 1994 John Wiley & Sons, Inc.
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  • 46
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    International Journal of Quantum Chemistry 49 (1994), S. 291-298 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For the first time, we obtain practical density matrices approximately N-representable by correlated-determinant wave functions, which are functionals of the electron density and entirely defined by information obtainable from the X-ray coherent diffraction experiment. © 1994 John Wiley & Sons, Inc.
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  • 47
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    International Journal of Quantum Chemistry 49 (1994), S. 239-251 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Chemical binding is modeled through interatomic charge transfer and accumulation of electron density at the bond center using the concepts of electronegativity and hardness parameters defined for the bond region. The generalized electronegativity and hardness parameters for the up- and down-spin electrons are also defined within the framework of spin-polarized density functional theory, leading to the formulation of covalent binding in molecules in terms of a two-way flow of unpaired electrons between the atoms. The associated energy changes corresponding to these descriptions are shown to provide quite accurate predictions of bond energies for simple heteronuclear diatomic molecules. © 1994 John Wiley & Sons, Inc.
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  • 48
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    International Journal of Quantum Chemistry 52 (1994), S. 1247-1247 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 49
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    International Journal of Quantum Chemistry 52 (1994), S. 1229-1243 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The coordination chemistry of the zinc ion in the active site of alcohol dehydrogenase has been studied by the ab initio Hartree-Fock method. Geometry optimizations were performed using analytical gradients and basis sets of double-zeta quality. Correlation effects were included at the MP2 level. The active site was modeled by Zn(HS)2XL(H2O)0-2, where X denotes ammonia or imidazole and L denotes water, methanol, ethanol, or the corresponding aldehydes or anions. It is shown that with uncharged L-ligands the four-coordinate complexes are about 20, 17, and 40kJ/mol more stable than are the corresponding three-, five-, and six-coordinate complexes, respectively. If the L-ligand is negatively charged, only the four-coordinate complexes are stable. These results suggest that the active-site zinc ion in alcohol dehydrogenase prefers a coordination number of four during the catalytic reaction, especially when the nonprotein ligand is negatively charged. Ligand exchange at the zinc ion is likely to proceed by an associative mechanism with intermittent formation of a five-coordinate complex. The results lend no support to mechanistic proposals attributing an important catalytic role to a negatively charged five-coordinate hydroxide or alkoxide ligand. © 1994 John Wiley & Sons, Inc.
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  • 50
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    International Journal of Quantum Chemistry 49 (1994), S. 495-509 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Unrestricted Hartree-Fock, coupled-cluster calculations are reported for the ground state of NeH+ using atomic basis sets of increasing size and accuracy for both Ne and H. The goal is to determine the basis set and coupled-cluster level of calculation needed to obtain a NeH+ potential energy curve of known accuracy. Here, it is shown that calculations using a quintuple zeta basis at the coupled-cluster singles and doubles level with noniterative triples, CCSD(T), predict a Ne - H bond dissociation energy that is within about 0.01 eV of the exact Born-Oppenheimer molecular electronic structure result. Spectroscopic constants determined using the Simons-Parr-Finlan procedure are found to be in very good agreement with the experimental results. Calculations at the augmented quadruple zeta level for the two lowest triplet excited states of the NeH+ species are presented. Both of these states separate into ground-state Ne+ and H(1s). The resulting potential curves predict stable minima at the SCF, CCSD, and CCSD(T) levels with dissociation energies of about 0.07 eV. Spectroscopic constants from the potential curves and dissociation constants are reported. © 1994 John Wiley & Sons, Inc.
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  • 51
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    International Journal of Quantum Chemistry 49 (1994), S. 539-548 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A set of exact conditions is compiled for the purpose of developing and testing approximations for the exchange-correlation energy as a functional of the electron density. Special emphasis is placed upon recently developed density-scaling relationships. Commonly used generalized gradient approximations are compared against several of these conditions. A direct tabular comparison of these functionals (not of calculated properties) with one another is also made. © 1994 John Wiley & Sons, Inc.
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  • 52
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    International Journal of Quantum Chemistry 49 (1994), S. 527-537 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have demonstrated molecular dynamics simulations using a combination of the classical molecular dynamics with density functional theory for argon clusters. Three different molecular dynamics schemes, which differ in their treatment of the potential energy and forces, have been carried out. The first uses a Lennard-Jones potential. In the second, the potential is computed using the Harris functional, and in the third, a combination of Lennard-Jones and Harris functional potentials is used. In addition to direct examination of the trajectories, the velocity autocorrelation function and its power spectrum have been computed to demonstrate the agreement between these three methods. The present studies show that a scheme that used a combination of model potentials and density functional theory provides a very useful tool for the dynamics simulation of systems that contain some fragments in which the analytical model potentials are not available. © 1994 John Wiley & Sons, Inc.
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  • 53
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    International Journal of Quantum Chemistry 49 (1994), S. 511-526 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Local spin density (LSD) methods were used to study the concerted 1,3-dipolar cycloadditions for fulminic acid plus acetylene, fulminic acid plus ethylene, and nitrone plus ethylene. Cartesian Gaussian double-zeta split-valence basis sets augmented with one set of polarization functions (DZVP) were used for the LSD calculations. The LSD calculations were performed with the LSD exchange functional (Dirac) and with the Vosko, Wilk, and Nusair correlation energy functional (VWN). Nonlocal spin-density corrections (NLSD) were estimated with the exchange functional of Becke and the correlation energy functional of Perdew (VWN + BP) and Becke, and the correlation energy functional of Lee, Yang, and Parr (B-LYP). Vibrational frequencies were computed at the VWN and B-LYP levels by numerical differentiation of the analytical first derivatives of the energy. Each of these reactions was examined using Hartree-Fock and Møller-Plesset perturbation theory for comparison. Geometry optimizations were carried out at the Hartree-Fock level with the 6-311G(d,p) basis set, and correlation energies were computed up to the MP4SDTQ/6-311G(d,p) level of theory. For the reactions of fulminic acid plus acetylene, fulminic acid plus ethylene, and nitrone plus ethylene, our best estimated density functional barrier heights are 7.8 ± 1.5, 8.9 ± 0.3, and 11.05 ± 1.9 kcal/mol, respectively. These results are in reasonable agreement with the correlated wave-function calculations and experimental estimates. © 1994 John Wiley & Sons, Inc.
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  • 54
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    International Journal of Quantum Chemistry 49 (1994), S. 549-557 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this work, a way to approximate the correlation energy functional starting from a model correlation factor is shown. The problem is addressed by using formally exact properties of the second-order density matrix and actual values of correlation energies for atoms. An Ansatz for the correlation factor is proposed that allows one to derive some known and some new correlation energy density functionals. Results for atomic systems show the reliability of the approach. © 1994 John Wiley & Sons, Inc.
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  • 55
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    International Journal of Quantum Chemistry 49 (1994) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 56
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    International Journal of Quantum Chemistry 49 (1994), S. 575-579 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An analysis is presented of the results of earlier ab initio computational studies of cyclobutadiene, cyclooctatetraene, and 1,4-dihydropyrazine. The first and third of these are normally categorized as antiaromatic. All three molecules are polyenes, even when the last two are forced into planar conformations. There is no driving force for extensive π delocalization, even when it would appear to have been facilitated. Calculated isodesmic energies show a net destabilization only in the case of cyclobutadiene, which we attribute to strain and repulsion between the π electrons of the C=C double bonds. The other two molecules have negative isodesmic energies, indicative of net stabilizing effects. We conclude that the concept of antiaromaticity is useful for identifying molecules that resist the apparent opportunity for extensive © delocalization, but that it does not intrinsically imply net destabilization. © 1994 John Wiley & Sons, Inc.
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  • 57
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    International Journal of Quantum Chemistry 49 (1994), S. 559-573 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Use of orthogonalized Hartree product (OHP) orbitals as the reference orbitals in coupled-cluster (cc) calculations is presented. Since such orbitals are determined without exchange, they provide as “classical” a description as possible. The OHP orbitals were generated by implementing Harris's formulation of the original Hartree method. Some computational considerations of the formulation are discussed. A critical evaluation of the OHP method as an orbital localization scheme is presented. The OHP orbitals were used as the reference in CCD and CCSD calculations and compared with corresponding Hartree-Fock (HF) reference CC results. The average variation of localized Hartree product (LHP) reference CCSD energy from that of the HF reference is 0.83 kcal/mol, whereas for CCD, the average variation is 234 kcal/mol, indicating the importance of single-excitation effects in CC calculations with non-HF references. © 1994 John Wiley & Sons, Inc.
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  • 58
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    International Journal of Quantum Chemistry 52 (1994), S. 195-203 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A series of complete coupled-cluster singles, doubles, and triples (CCSDT) calculations have been performed with Hartree-Fock (HF) and Brueckner (B) orbitals. Calculations have been performed with a double-zeta plus polarization basis set on the H2O, SiH2, NH2, BeO, C2, CN+, and BN molecules. Calculations on H2O and SiH2 at equilibrium and stretched geometries show negligible difference between HF-and B-CCSDT energies. This is also true for NH2, except when the bonds have been stretched to twice their equilibrium values, at which point there is about a 2.5 milli-Hartree (mEh) difference. Calculations on the isoelectronic systems BeO, C2, CN+, and BN were performed at equilibrium geometries. Even though these systems have large T1 amplitudes, the difference between HF- and B-CCSDT energies is only about 1 mEh. For the CCSD method and the CCSD(T) method, which includes triple excitations in an approximate, noniterative manner, however, somewhat larger differences are observed between and HF-and B-CC results. Finally, some properties of BN were computed using HF- and B-CC methods. There are quite small differences between the HF- and B-CCSDT results, but significantly larger ones for the more approximate CCSD and CCSD(T) methods. For this difficult system, where the CCSD(T) approximation seems to be inadequate for HF orbitals, the use of Brueckner orbitals improves the agreement of CCSD(T) with CCSD(T) substantially for re and we, although the difference for μ is unaffected. © 1994 John Wiley & Sons, Inc.
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  • 59
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    International Journal of Quantum Chemistry 52 (1994), S. 181-194 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computational study, using relativistic effective core potentials, is presented of transition metalmain group multiply bonded complexes, of interest in the context of catalysis and chemical vapor deposition of TM/MG materials. Model d0 transition metal complexes chosen are of the general form ClnME where M = Zr (n = 2), Ta (n = 3), and W (n = 4). Main group elements of interest are the tetrels (E = C, Si, Ge, Sn), pnictogens (E = N, P, As, Sb), and chalcogens (E = O, S, Se, Te). A comparison between calculated metric data and available experimental data for a wide range of TM = MG complexes will help in further assessing efficient computational approaches to TM complexes, particularly of the heavier MG elements, as a function of metal, ligand and level of theory. In the present work restricted Hartree Fock (RHF) and Møller-Plesset second order perturbation theory (MP2) wavefunctions were employed. In most cases there are small differences between RHF and MP2 calculated geometries, with both methods showing good agreement with experimental data, suggesting these approaches will be suitable for the study of larger, more experimentally relevant models. Changes in ZrE bond lengths for E = chalcogen (upon going from RHF to MP2) suggest a fundamentally different description between the Zr-oxo bond and heavier chalcogens, a result supported by recent experimental data for a series of Zr-chalcogenidos. To date no examples have been reported of arsinidene and stibinidene complexes. Computational results show similar behavior among the heavier pnictogen complexes, i.e., LnM = EH (E = P, As, Sb), suggesting that strategies used to synthesize phosphinidenes may be suitable in the search for the first LnM = AsR and LnM = SbR complexes. Additionally, calculations suggest that design of ligand sets which yield linearly coordinated phosphinidenes (and presumably As and Sb analogues) will lead to phosphinidenes with stronger metal-pnictogen bonds and increased thermodynamic stability versus nonlinearly coordinated examples. © 1994 John Wiley & Sons, Inc.
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  • 60
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    International Journal of Quantum Chemistry 52 (1994), S. 205-214 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Relativistic pair correlation energies of Xe were computed by employing a recently developed relativistic coupled cluster theory based on the no-pair Dirac-Coulomb-Breit Hamiltonian. The matrix Dirac-Fock-Breit SCF and relativistic coupled cluster calculations were performed by means of expansion in basis sets of well-tempered Gaussian spinors. A detailed study of the pair correlation energies in Xe is performed, in order to investigate the effects of the low-frequency Breit interaction on the correlation energies of Xe. Nonadditivity of correlation and relativistic (particularly Breit) effects is discussed. © 1994 John Wiley & Sons, Inc.
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  • 61
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    International Journal of Quantum Chemistry 52 (1994), S. 215-226 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Topological properties of the charge density \documentclass{article}\pagestyle{empty}\begin{document}$ \rho (\vec r) $\end{document} of a series of diatomic molecules, as well as ethane, ethene, and acetylene are calculated at the Hartree-Fock level employing various basis sets, and by the AM1 method. The effect of the core orbitals on the bonding regions in these molecules is examined. The results help to evaluate the utility of AM1 wavefunctions for analyzing the topological properties of the charge density. © 1994 John Wiley & Sons, Inc.
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  • 62
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    International Journal of Quantum Chemistry 51 (1994), S. 343-344 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 63
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    International Journal of Quantum Chemistry 51 (1994), S. 397-405 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Slater-type orbitals (STOs) with a single-exponent by shell or by subshell have been constructed to reduce the number of integrals evaluated in the electronic calculations. The expansion of orbitals in these new basis sets has been carried out in detail for the ground state of the Ne atom. We have carried out a study of STO basis sets with a different size for this atom that could help to propose empirical rules for the selection of these basis sets for other atoms. The usefulness of STOs with single-exponent by shell and subshell and the splitting of s and p functions are discussed. © 1994 John Wiley & Sons, Inc.
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  • 64
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    International Journal of Quantum Chemistry 51 (1994), S. 407-415 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An application of symplectic implicit Runge-Kutta (RK) integration schemes, the s-stage Gauss-Legendre Runge-Kutta (GLRK) methods of order 2s, for the numerical solution of molecular dynamics (MD) equation is described. The two-stage fourth-order GLRK method, the implicit midpoint rule, and the three-stage diagonally implicit RK method of order four are studied. The fixed-point iteraction was used for solving the resulting nonlinear system of equations. The algorithms were applied to a complex system of N particles interacting through a Lennard-Jones potential. The proposed symplectic methods for MD integration permit a wide range of time steps, are highly accurate and stable, and are thus suitable for the MD integration. © 1994 John Wiley & Sons, Inc.
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  • 65
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    International Journal of Quantum Chemistry 51 (1994), S. 425-437 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rapidly developing field of statistical theory of spectra of many-electron systems is briefly reviewed. In particular, new formal developments, their implementations in studying general properties of the model spaces, and links to the reduction problem are addressed. Applications in molecular and atomic spectroscopy are also discussed. © 1994 John Wiley & Sons, Inc.
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  • 66
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    International Journal of Quantum Chemistry 51 (1994), S. 447-463 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The convergence properties of the expansions of (a) the function 1/r and (b) the function exp(-αr) in an even-tempered basis of Gaussians are studied analytically. The starting points are the Gaussian integral representations of 1/r and exp(-αr). One arrives at an expansion in a finite number of Gaussians in three steps: (1) a restriction of the integration domain, (2) a variable transformation, and (3) discretization of the integral. The cutoff error goes in both cases essentially as exp(-ah), and the discretization error, as exp(-b/h). The minimum overall error is reached for the β-parameter of an even-tempered basis β ∽ exp(c/√n), where n is the dimension of the basis, and the error itself decreases as ∊ ∽ exp(-d√n). Different optimum basis parameters are obtained depending on which quantity one wants to minimize, e.g., the error of the energy expectation value, the distance in Hilbert space, the variance of the energy, or the density at the nucleus. © 1994 John Wiley & Sons, Inc.
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  • 67
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    International Journal of Quantum Chemistry 51 (1994), S. 473-485 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum Chemistry can today boast the fact that ordinary chemists - by means of personal computers and programs available - can study many theoretical properties of molecules by solving the Schrödinger equation and get an advance idea of how to properly arrange their experiments to find new features. For small molecules, they can use ab initio programs of the Hartree-Fock type, and for large molecules, they can use semiempirical programs available. To achieve higher accuracy and to include electron correlation properly, however, one has in the ab initio approach to use configurational interaction methods and giant computers, whereas in the semiempirical methods, the effect of correlating is often taken into account in the adjustable parameters forming the basis for this approach. In connection with the ab initio methods, it is further emphasized that the resolvent methods combined with the partitioning technique provide an excellent conceptual and mathematical framework for getting solutions of any accuracy desired, but that most of the programming of this approach remains to be done. Ordinary wave mechanics is valid at absolute zero of temperature, and - in order to include such important chemical concepts as temperature, entropy, free energy, etc. - one has to go over to general quantum theory and the Liouvillian formalism. One can stil start from the Coulombic Hamiltonian, but it becomes of importance to include the nuclear motion properly and preferably on the same level as that of the electronic motion. It is further emphasized that the irreversibility problem is not yet fully solved, that the theory of the interaction between matter and electromagnetic fields still needs some improvements, and that the question of the proper introduction of relativistic corrections in the quantum theoretical treatment of molecular systems involving heavier atoms still has a great deal to desire. © 1994 John Wiley & Sons, Inc.
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  • 68
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A microscopic formulation of solution chemical reactions, taking reactants and medium structures into consideration, is presented on the basis of microscopic understandings obtained by recent quantum chemical methods (i.e., ab initio molecular orbital theory, etc.). Assuming thermal equilibrium of the medium bath, an effective internal Hamiltonian is derived, and, further, its derivative with respect to internal normal coordinates is proved explicitly to give the same force field as is provided by the free-energy surface or potential of mean force. The free-energy surface can be expressed in the composite normal coordinate system (CNCS) consisting of some normal coordinate systems of isolated reactants and surrounding solvent molecules (i.e., medium solvent molecules). In CNCS, in use of diagonal elements obtained in the Hessian matrix of the free-energy surface, effective normal-mode frequencies, which reflect the equilibrium solvent effect, are estimated. Furthermore, on the generalized Langevin equation (GLE) treatment, a closed expression of the time-dependent frictional coefficient is derived on a microscopic basis, reflecting the reactant and solvent structures. The nonequilibrium effect is estimated by an analytical expression similar to that in the Grote-Hynes theory. The rate constant is evaluated for a typical model system and it is shown that the equilibrium rate constants should be reduced by a factor 0.997. Finally, it is concluded that the present microscopic theory is reasonably applicable to the estimation of chemical reaction rate constants in solution. © 1994 John Wiley & Sons, Inc.
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  • 69
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A number of physical processes, such as autoionization, predissociation, ac- or dc-field-induced ionization, multiphoton dissociation, or chemical transformations, can be formulated as problems involving a nonstationary state satisfying a time-independent complex eigenvalue Schrödinger equation (CESE). The CESE gives rise to all the conceptual and practical difficulties associated with the polyelectronic structures of excited states, as well as novel ones due to the presence of external fields and to the physical significance of the continuous spectrum. In a series of articles from this institute, it has been shown how advanced electronic structure theory and methods suitable for excited states can be integrated in a practical way into selected elements of the rigorous theory of discrete states interacting with the continous spectrum in order to solve the CESE nonperturbatively and efficiently and compute properties such as positions and widths of inner hole or multiply excited states, multiphoton ionization rates, multichannel predissociation lifetimes, nonlinear static and frequency-dependent polarizabilities, and tunneling rates. The present article constitutes a review of the basic features of this theory and its computational methods. © 1994 John Wiley & Sons, Inc.
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  • 70
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    International Journal of Quantum Chemistry 52 (1994) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 71
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    International Journal of Quantum Chemistry 51 (1994), S. 569-575 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method for finding the chemical potential for an electronic system with density ρ = Σρi represented within the Kohn-Sham approximation is proposed. To find the chemical potential of the system under consideration, we propose to refer to the definition μ = δE/δρ and to apply the mathematical properties of functional derivatives. Particularly, in the case examined, the result μ = μ(r) ≠ const has been obtained, which may be explained in the framework of the calculus of variation. Taking the limit limr→∞ μ(r) as the best approximation to the proper equilibrium chemical potential of a free atom, one obtains μ = -I, where I denotes first ionization energy. A possibility of further applications of the proposed method in relation to crystalline systems is also discussed. © 1994 John Wiley & Sons, Inc.
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  • 72
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    International Journal of Quantum Chemistry 52 (1994), S. 339-348 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The hydration energies of the proton, hydroxyl ion, and several inorganic ions were calculated using the multicavity self-consistent reaction field (MCa SCRF) method developed for the quantum-mechanical modeling of rotationally or flexible systems in dielectric media. The ionic complexes H3O+(H2O)4, OH-(H2O)4, NH4+(H2O)4, and Hal-(H2O)4, where Hal = F, Cl, or Br, have been studied. Each complex was divided between five spheres, corresponding to the central ion and four water molecules in their first coordination sphere, respectively. Each cavity was surrounded by a polarizable medium with the dielectric permittivity of water at room temperature (80). The ionic hydration energies of ions were divided into specific and nonspecific parts. After accounting for the cavity-formation energy using scaled particle theory, good agreement between the total calculated and experimental hydration energies was obtained for all ions studied. © 1994 John Wiley & Sons, Inc.
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  • 73
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    International Journal of Quantum Chemistry 52 (1994), S. 89-96 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We presnet a theoretical study of the effect of the conjugation length on the electronic properties and second-order molecular polarizabilities β in p-amino-p′-nitrodiphenylacetylene molecules where the number of triple bonds in the conjugated segment varies from 1 to 4. The β values are calculated via an intermediate neglect of differential overlap/single configuration interaction (INDO/SCI) sum-over-states (SOS) approach. We test the convergence of the SOS method and the validity of the two-state model to describe the β response. The results indicate that increasing the conjugation length results in a decrease of the charge transfer within the molecule. The two-state model is shown to break down as the conjugated segment extends to four triple bonds; this is due to the appearance of several low-lying nearly isoenergetic excited states that significantly contribute to the β response. The theoretical results are in excellent agreement with recent experimental data. © 1994 John Wiley & Sons, Inc.
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  • 74
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Based on the generalized relationship for calculating the nuclear spin-spin coupling constants and the correlation of the bond stretching frequencies with the coupling constants, a novel generalized reationship, which includes the contributions of not only the hybrid orbitals, but also the net atomic charges, is introduced for calculation of the bond stretching frequencies and employed to elucidate the C—H stretching frequencies in hydrocarbons and heterosubstituted hydrocarbons on the basis of the MBOHO calculation employing the CNDO/2 approximation. By use of the obtained concrete realtionships, one can get different νCH value for the C—H bonds existing in different chemical environments, which is coincident with chemical intuition. The calculated numerical results show that for hydrocarbons the contribution of the net atomic charges can be neglected, but it is necessary for heterosubstituted hydrocarbons to include the contribution of the net atomic charges to the C—H stretching frequencies. The calculated C—H stretching frequencies are in good ageement with the experimental data, which shows its reasonableness. © 1994 John Wiley & Sons, Inc.
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  • 75
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    International Journal of Quantum Chemistry 52 (1994), S. 135-146 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The so-called shake-up satellites accompanying C1s photoionization in C60 have been studied theoretically by means of INDO/CI. It is found that the lowest shake-up satellites in C60 correspond to global charge-transfer excitions that move charge from the opposite side of the fullerence cage to the core-hole region, whereas higher-energy satellites tend to move charge from regions nearer to the core hole. Analogies are drawn, with, on the one hand, smaller model molecules such as napthalene and acenaphtylene and, on the other hand, infinite systems such as graphite. © 1994 John Wiley & Sons, Inc.
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  • 76
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    International Journal of Quantum Chemistry 52 (1994), S. 165-175 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A Hamiltonian model to describe molecular vibrations of triatomic molecules is proposed. The Hamiltonian is based on the use of the Kratzer potential variable for the stretching motions and a perturbed Poschl Teller potential for the bending one. The perturbation and variational treatments to compute the vibrational energies of this Hamiltonian can be developed using a zero-order system that includes part of the couplings between the stretching and bending motions. All the matrix elements involved in these calclations can be then evaluated in closed form. A numerical application to the HCN molecule is made. © 1994 John Wiley & Sons, Inc.
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  • 77
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    International Journal of Quantum Chemistry 52 (1994), S. 247-265 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electron density theory is first employed to express the potential energy curve of the H2+ molecular ion in terms of bond midpoint properties. For heavy homonuclear diatomics, low-ordr density gradient theory is used, but now for the chemical potential, with a similar conclusion to that for H2+. Homonuclear clusters of alkali atoms are then treated in some detail. Finally the dissociation of doubly charged clusters is considered, by a study of supermolecular treated in some detail. Finally the dissociation of doubly charged clusters is considered, by a study of supermolecular ions (Na20+)2 and (K20+)2, again using a density gradient expansion in low order. The deviation between the barrier for fission and the Coulomb barrier is linear in the bond midpoint density over a substantial range of fragment separation. © 1994 John Wiley & Sons, Inc.
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  • 78
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    International Journal of Quantum Chemistry 52 (1994), S. 211-225 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Coupled-cluster (CC) methods at the level of CCSD, CCSD+T(CCSD), CCSD(T), CCSDT-1, and CCSDT-3 are applied to calculations of the dipole moment and polarizability of the CN molecule, ionization potentials and electron affinities of the oxygen and iron atoms and CN molecule, and the energy splitting of the 5D and 5F states of the iron atom. Both UHF and ROHF references are applied. Extended basis sets are used in some comparison of CC data to experiment. All calculated atomic and molecular properties are known as challenging problems, suitable for a careful analysis of the performance of sophisticated versions of the CC approach. Attention is paid to energy terms distinguishing CCSD(T) from CCSD+T(CCSD). We exploit results from various iterative and noniterative high-level CC methods in the assessment of error bars in calculations of atomic and molecular properties. © 1994 John Wiley & Sons, Inc.
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  • 79
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    International Journal of Quantum Chemistry 52 (1994), S. 481-500 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report some of our recent results from theoretical modeling of the interaction between metals and π-conjugated molecules. We apply the semiempirical Austin Model 1 method for the investigation of two fundamentally different systems: sodium interacting with diphenylpolyenes and aluminum interacting with poly (p-phenylenevinylene) and derivatives. In the former case, electronic-structure calculations are also performed using the nonempirical pseudopotential Valence Effective Hamiltonian (VEH) technique. For sodium interacting with diphenylpolyenes, we investigate the geometric and electronic structure modifications that are induced upon charge transfer in a series of diphenylpolyenes with an even number of carbons (from stilbene to α,ω-diphenyltetradecaheptaene, i.e., one to seven double bonds in the polyene part of the molecule). Densities of valence states generated from the VEH calculations are directly compared to experimental ultraviolet photoelectron spectroscopy valence band spectra; these are recorded during successive sodium exposure of the molecular solids. The charge-storage states in the series are discussed in terms of soliton-antisoliton-pairs and polaron-like states induced upon doping (reduction). Introducing aluminum atoms onto poly (p-phenylenevinylene) systems allows us to study the initial stages of interface formation. We find that aluminum atoms preferentially react with the vinylene linkages in both poly (p-phenylenevinylene) and poly (2,5-dimethoxy-p-phenylenevinylene). When carbonyl groups appear on the side of the chains, as in poly (2,5-dialdehyde-p-phenylenevinylene), new reactive sites are induced, leading to structures with stabilities comparable to those in the most stable configurations involving a single vinylene group. In all three systems investigated, the interaction with aluminum induces major modifications of the polymer chains with interruptions of the π-system caused by formation of sp3-like defects. © 1994 John Wiley & Sons, Inc.
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  • 80
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    International Journal of Quantum Chemistry 52 (1994), S. 553-563 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy surfaces of Mn+/SCN- and Mn+/OCN- (M = Li+ and Mg2+) ion pairs have been calculated at the Hartree-Fock and MP2 levels of theory. The electrostatic potential and the actual binding energies are compared. Besides linear ion pairs, nonlinear ones are also found and are in some cases the most stable ones. The electrostatic potential and the actual binding to cations are compared. © 1994 John Wiley & Sons, Inc.
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  • 81
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    International Journal of Quantum Chemistry 52 (1994), S. 541-551 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The minimum-energy structures and bonding properties of the hydrogenated lithium clusters, Li4H2 and Li7H, have been investigated by means of an ab initio Monte Carlo simulated annealing method. The minimum-energy structures of Li4H2 and Li7H are found to resemble those of the triangular planar (D3h) isomer of Li6 and Td isomer of Li8 clusters, respectively. © 1994 John Wiley & Sons, Inc.
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  • 82
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    International Journal of Quantum Chemistry 52 (1994), S. 329-337 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The full-optimized-APSG approach based on the MC SCF technique is developed and applied to study ground-state properties of one-dimensional correlated systems. The effects of electron-electron interactions and bond relaxation are considered for the conjugated diatomic polymer; charge distribution and bond relaxation are calculated for the N = 50 chain within a wide range of site energy and e-e integral modulation involving the case of alternancy symmetry for diatomic systems. With relation to the results obtained, the problem of the neutral-ionic transition in mixed-stack crystals is discussed. © 1994 John Wiley & Sons, Inc.
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  • 83
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The basic concepts of fractal geometry are reviewed and applied to quasi-two-dimensional zinc electrodeposits. Among the different structures developed during zinc electrodeposition, we have identified the open texture (obtained at large zinc sulfate concentration and small applied potential values) as a typical fractal self-similar structure. © 1994 John Wiley & Sons, Inc.
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  • 84
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    International Journal of Quantum Chemistry 52 (1994), S. 465-478 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Results of density functional calculations will be reported on a variety of hydrogen-bonded complexes, ranging from weak to strong hydrogen bonds. The charged bimolecular NH3—NH4+ complex and the dimers of water and methanol were investigated using a local approximation of the exchange-correlation potential and two different nonlocal potentials with gradient corrections. In the case of the water dimers, the dependence of the results on the extension of the atomic basis set has also been investigated. The equilibrium structures of all complexes have been determined. Dipole moments, hydrogen-bond lengths, and hydrogen-bonding energies, calculated with corrections for the basis-set superposition error using the counterpoise method, have been found to agree well with the corresponding experimental results. © 1994 John Wiley & Sons, Inc.
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  • 85
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    International Journal of Quantum Chemistry 52 (1994), S. 457-463 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Although several authors proposed the existence of long-range correlations in DNA sequences [W. Li and K. Kaneko, Europhys. Lett. 17, 655 (1992); R.F. Voss, Phys. Rev. Lett. 68, 3805 (1992); C.-K. Peng et al., Nature 356, 168 (1992)], we claim that the real character of the correlations remains uncertain. To corroborate long-range correlations, one should prove that the correlation functions decay as an inverse power of the distance between the nucleotides in the DNA sequence. Instead of a direct calculation of the correlation functions, one can calculate either the Fourier transforms of the sequences or the characteristics of “DNA walk.” In our previous work we pointed out that the character of the results depends upon the way the DNA sequences are chosen. When looking for the correlations separately in introns and separately in exons, we found that the resulting correlations are short range. In this work, we discuss the numerical aspects of two computational approaches: the calculation of correlation function and the evaluation of “DNA walk” characteristics. We present the analytic results for the case of exponential correlations. © 1994 John Wiley & Sons, Inc.
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  • 86
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    International Journal of Quantum Chemistry 52 (1994), S. 491-506 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum chemical calculations for two different kinds of native proteins (pig insulin and hen egg white lysozyme) were done by the extended negative factor counting method in which the matrix elements have been calculated at the ab initio level with the help of a minimal basis and the simulation of the aqueous solution environment. The hopping conductivities were worked out by the formulas of the random walk theory of Lax and co-workers. The electronic density of states of these native proteins confirmed the conclusions obtained previously from aperiodic model peptides chains. The results show that the ac conductivity vs. frequency curve of these native proteins lies in the range of some typical good inorganic amorphous conductors and thus confirm that proteins, if doped, are amorphous conductors. The behavior of the ac conductivities of the proteins in different ranges of frequencies are discussed. © 1994 John Wiley & Sons, Inc.
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  • 87
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    International Journal of Quantum Chemistry 52 (1994), S. 625-632 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We test an exchange-correlation functional with explicit dependence on kinetic-energy density as well as the density, its gradient, and its Laplacian, on the Gaussian-2 thermochemical data base. With a small degree of exact-exchange mixing, we find average errors with respect to experiment of order 2 kcal/mol, 0.15 eV, and 2 kcal/mol, respectively, for atomization energies, ionization potentials, and proton affinities. © 1994 John Wiley & Sons, Inc.
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  • 88
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    International Journal of Quantum Chemistry 52 (1994), S. 633-644 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Density-Functional method, with Linear Combination of Atomic Orbitals, has been applied to eight crystals: the lattice equilibrium parameters, and the lattice formation energies have been calculated at the Hartree-Fock level (HF), at the hybrid Hartree-Fock Density-Functional level (DFT/HF), and at the Kohn-Sham Density-Functional level (DFT). The band structures and the electronic charge distributions calculated at the DFT and HF levels are compared. © 1994 John Wiley & Sons, Inc.
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  • 89
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    International Journal of Quantum Chemistry 52 (1994), S. 767-797 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We obtain an analytic expression for the total energy of a metallic cluster formed by N atoms of valence v and with net charge Q, by solving variationally the extended Thomas-Fermi version of density functional theory within the spherical jellium model. The energy is expressed as an expansion (mass formula) in decreasing powers of the cluster radius RI = rsZ1/3, with Z = vN, and rs, the one electron radius of the bulk, \documentclass{article}\pagestyle{empty}\begin{document}$$ E\left( {r_s ,Z,Q} \right) = \sum\limits_{n = - 2}^3 {a_n \left( {r_s } \right)Z^{n/3} + Q\sum\limits_{n = 0}^2 {W_n \left( {r_s } \right)Z^{ - n/3} + \frac{1}{2}\frac{{Q2}}{{R_I + d\left( {r_s } \right)}},} } $$\end{document} and the coefficients of this mass formula are functions of rs. Contributions of volume (RI3), surface (RI2), curvature (RI), constant (RI0), (1/RI), and (1/RI2) are clearly separated in the formula. The Chemical potential, work function, electron affinity, and ionization potential are easily obtained for neutral and charged clusters of any electronic density in the metallic range. A general estimation of the critical size for stability against electron detachment of negatively charged clusters is also obtained. The stability of highly charged clusters against fragmentation is also studied. © John Wiley & Sons, Inc.
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  • 90
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    International Journal of Quantum Chemistry 52 (1994), S. 957-961 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The applicability of the local density approximation (LDA) and of corresponding gradient corrections (for the exchange and correlation energy) for the treatment of the hydrogen bond is investigated. As test systems, we consider the water dimer and the H2O…HX complexes (X = F, Cl, Br): Using an LCAO scheme, their equilibrium geometries and interaction energies are ćalculated and compared with experimental data and with other calculations. We obtain that the LDA gives the geometries in qualitative agreement with other data, whereas the energies are overestimated. The use of the gradient corrections (GC) according to Becke and Perdew leads to a significant improvement of the geometry, and especially of the interaction energies. The calculations indicate further that LDA + GC should also be able to describe weaker intermolecular interactions than the usual hydrogen bond. Finally, a short discussion of the charge distribution and the dipole moments of the H2O…HX complexes is performed. © 1994 John Wiley & Sons, Inc.
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  • 91
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    Journal of Polymer Science Part B: Polymer Physics 32 (1994), S. 2289-2306 
    ISSN: 0887-6266
    Keywords: poly(ethylene terephthalate) ; fiber ; x-ray diffraction ; crystal structure ; three-phase model ; modulus ; tenecity ; shrinkage ; Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The structure of four semicrystalline poly(ethylene terephthalate) fibers were analyzed with full-pattern (two-dimensional Rietveld) x-ray diffraction refinement, small-angle x-ray scattering, and thermal mechanical analysis, and compared to some of their known mechanical properties. The classical two-phase model of crystal and amorphous phases were unable to correlate structure and properties. We found that there must be a third phase, an oriented, intermediate phase, located mainly between the fibrils. About 1/3 of the intensity of fiber diffraction of the analyzed samples was contributed from such intermediate phase. For some fiber properties the intermediate phase plays a similar role as proposed for “taut tie molecules.” A simple model for the description of structure-insensitive properties of PET fibers was developed, based on this quantitaitve separation into three phases. The oriented intermediate phase changes the definition and calculation of the basic parameters of the fiber structure, such as crystallinity and orientation. Based on small-angle x-ray evidence, the crystallites are assumed to be separated by layers of largely amorphous material, both surrounded by the intermediate phase. The initial modulus of the fiber is determined mainly by the amount and orientation of the intermediate phase which has a maximum modulus of about 500 g/d on full orientation instead of the earlier predicted 150 g/d for fully oriented semicrystalline fibers. Based on the relationship between tenactity and average orientation function, the maximum tenacity for PET fibers of a structure like the ones analyzed may reach 20-45 g/d instead of earlier predictions of 10 g/d. The additional information needed to understand the structure-sensitive property of shrinkage is discussed. Presently easily accessible parameters have no quantitative predictive capabilities. © 1994 John Wiley & Sons, Inc.
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  • 92
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    Journal of Polymer Science Part B: Polymer Physics 32 (1994), S. 2653-2659 
    ISSN: 0887-6266
    Keywords: tetraalkylammonium halide ; atomic force microscopy ; crystal structure ; surface structure ; hextriacontane ; Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The surface structures of two series of tetra-n-alkylammonium halides, N(CxH2×+1)4I and N(CxH2x+1)4 Br have been investigated with atomic force microscopy (AFM) and compared to hexatriacontane (C36H74). The surfaces could be imaged with atomic resolution. The observed primitive, square surface-patterns of tetra-n-butyl chloride and bromide are in good accord with x-ray single-crystal structure. For n 〉 4, x-ray powder diffraction showed that increasing the alkyl chain-length leads mainly to an appropriate increase of the unit cell along the c-axis, which suggests similar layer structures for all long-chain salts beyond the butyl homologue. Within the centers of the molecular layers of these crystals reside the halide anions and the quaternary nitrogens. The surfaces accessible for AFM consist of methyl end-groups. As the number of carbon atoms increases beyond four, the surface symmetry changes to the face-centered square patterns characteristic of many paraffins. The chains of the tetraalkyl ammonium salts pack, however, less dense than paraffins. © 1994 John Wiley & Sons, Inc.
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    Journal of Polymer Science Part B: Polymer Physics 32 (1994), S. 851-857 
    ISSN: 0887-6266
    Keywords: rigid rod polymer ; thermotropic ; aromatic polyester ; oriented film ; thermal expansion ; crystal structure ; Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The linear thermal expansion coefficients of oriented films of poly(p-phenylene-2,5-didodecyloxy-terephthalate) in the three structures B, A, and Lf are reported. The results are interpreted in terms of a molecular laminate model in which the rigid main-chain layers are separated by the aliphatic side chains. In a film oriented unidirectionally the rigid mainchain layers provide a negative contribution to the thermal expansion coefficient, while the side chains supply a positive contribution. Therefore, the resulting expansion coefficient α depends on the details of the main- and side-chain packing and low-temperature values between α = +0.3 × 10-5 K-1 (A and Lf and α = -1.2 × 10-5 K-1 (B) are found in highly oriented films. Measurements on undrawn films are in accordance with the molecular laminate model. © 1994 John Wiley & Sons, Inc.
    Additional Material: 7 Ill.
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  • 94
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 12-22 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The suitability of the two most widely used strategies to compute semiempirical MEPs is examined. For this purpose, MEP minima, electrostatic charges, and dipoles for a large number of molecules were computed at the AM1, MNDO, and PM3 levels using both the NDDO strategy developed by Ferenczy, Reynolds, and Richards and our own quasi-ab initio method. Results demonstrate that the quasi-ab initio is preferred over the NDDO method for the computation of MEP minima. It is also found that the best set of semiempirical charges and dipoles are obtained using either the AM1 NDDO or the MNDO quasi-ab initio methods. In these two cases, the quality of the results is fully comparable with 6-31G* values. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 6 Tab.
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  • 95
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 54-60 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Explicitly correlated Gaussian functions have been used in variational calculations on the ground state of the helium atom. The major problem of this application, as well as in other applications of the explicitly correlated Gaussian functions to compute electronic energies of atoms and molecules, is the optimization of the nonlinear parameters involved in the variational wave function. An effective Newton-Raphson optimization procedure is proposed based on analytic first and second derivatives of the variational functional with respect to the Gaussian exponents. The algorithm of the method and its computational implementation is described. The application of the method to the helium atom shows that the Newton-Raphson procedure leads to a good convergence of the optimization process. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 1 Ill.
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  • 96
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 90-104 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: We described various technical aspects in applying reaction field theories using continuum models to practical problems. It was investigated how solvent-dependent properties of solute molecules are influenced by the following factors: difference in quantum-chemical description of solute-solvent (continuum dielectric) interaction, difference in values of empirically determinable parameters such as atomic radii to define a size of a cavity created in a dielectric to accommodate a solute, and difference in the sophistication level of molecular orbital calculation, including electron correlation and different parameter sets (MNDO, AM1, and PM3). Through these investigations, the better parameter sets were found to evaluate accurately physicochemically important parameters such as hydration enthalpy. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 8 Ill.
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  • 97
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 132-143 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio MP2/6-31G*//MP2/6-31G* and semiempirical AM1 and PM3 calculations on a series of differently substituted α-oxo-ketenes are used to investigate E/Z-isomerism and rotational barriers in these molecules. Sterically crowded derivatives are found to exist solely as s-E conformers. The unusual stability of these derivatives thus can be attributed to their inability to adopt the s-Z conformation required for the normal α-oxo-ketene reactions. With respect to structures and energies, the PM3 method (especially in the case of highly crowded molecules) is found to be less reliable than AM1. Ab initio HF/3-21G and PM3 vibrational frequencies appear to be of sufficient accuracy for a distinction between s-Z and s-E conformers. In this respect, the AM1 method appears less reliable. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 2 Ill.
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  • 98
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 200-207 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Atomic charges derived from a recently described approach to the very rapid computation of AM1 electrostatic potentials (ESP) accurately parallel, but are ca. 20% smaller than, the corresponding HF/6-31G* values. The dipole moments computed from the AM1 charges are virtually identical to those derived directly from the wave function and in rather better agreement with the experimental values than those computed using the HF/6-31G* charges. Unlike other approaches to the semiempirical calculation of ESP-derived charges, the present method also yields near HF/6-31G* quality potentials close to the molecular periphery. For medium-sized organic molecules (40-100 basis functions), the method is approximately two orders of magnitude faster than those involving prior deorthogonalization of AM1 wave function and explicit computation of the full ESP integral matrix. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
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  • 99
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 233-240 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Rigid inhibitors suffer a smaller loss of conformational entropy when they bind to a macromolecular receptor than their acyclic counterparts. They can also be useful for elucidating pharmacophores due to their reduced conformational space and may be more amenable to synthesis. Computational approaches to rational drug design should therefore take these factors into consideration when suggesting possible compounds. We describe how an acyclic chain which links two parts of a receptor site can be ‘braced’ using ring templates. The acyclic chains may be produced from a number of sources, including lattices or the structures of known inhibitors. The resulting structures contain a rich variety of isolated and fused ring systems, which provide many useful molecular skeletons for subsequent inhibitor design. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 7 Ill.
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  • 100
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 251-268 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A general force field type of calculation has been devised in connection with MM3 to treat 1,2- and 1,4-diketones, both when they are not conjugated (as in derivatives of glyoxal) and when they are conjugated (as in derivatives of ortho- and para-benzoquinone). The molecular structures, moments of inertia, dipole moments, and vibrational spectra have been examined for about 15 compounds, some in several conformations. Ab initio calculations (6-31G*) have been used to determine quantities that have not been previously defined by experiment. In general, the force field permits the calculation of the structures with high accuracy, and the spectroscopic and conformational energy data with fair accuracy. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
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