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  • 1990-1994  (2,459)
  • 1965-1969  (313)
  • Computational Chemistry and Molecular Modeling  (2,611)
  • Bone
  • Electron Microscopy
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Year
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Cellular and molecular life sciences 50 (1994), S. 530-535 
    ISSN: 1420-9071
    Keywords: Bone ; collagen ; fulvic acids ; DNA ; ancient DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The amount of DNA in ancient bone was determined by ethidium bromide staining after the removal of the potent Taq inhibitor, fulvic acid. A complete decalcification and a perfusion protocol were used to recover DNA from bone. A variety of purification techniques including molecular sieve, hydroxyapatite binding and ‘Magic’ preparations yielded DNA that spanned from 3.4μg/g of bone to below detectable limits. Fulvic acid was shown to interfere with the quantification of DNA derived from ancient human skeletal material one hundred to over seven thousand years old. Scanning UV in the 300 to 230 nm range is a simple and sensitive technique for documenting fulvic acid contamination in ancient bone extracts.
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  • 2
    ISSN: 1438-2199
    Keywords: Amino acids ; Homocysteine thiolactone ; Alpha-homocysteine thiolactone ; Bone ; Glycosaminoglycans
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Summary Homocysteine (HC) is a radiation protector but toxic to bone. Its derivative homocysteine thiolactone (HCTL) and the alpha-alkylated analogue (A-methyl-HCTL) was fed to mice for a period of six weeks in a daily dose of 50 mg/kg body weight. Parameters for bone matrix as collagen content, acid solubility of bone collagen, urinary bone collagen cross links (pyridinolines) and urinary acid glycosaminoglycans were determined. Urinary acid glycosaminoglycans were significantly reduced in the HCTL treated group but not in the alpha-methyl-homocysteine thiolactone (A-methyl-HCTL) group (controls: 45 ± 7 mg/mmol creatinine, homocysteine thiolactone 38 ± 5 mg/mmol creatinine, A-methyl HCTL 45 ± 6 mg/mmol creatinine). No differences were found for the parameters of bone collagen between the groups. The potent radiation protecting methylated derivative therefore did not change bone matrix and should be a candidate for further toxicological studies.
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  • 3
    ISSN: 1432-1440
    Keywords: Parathyroid ; Crisis ; Kidney ; Bone ; Turnover
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Parathyroid crisis occurring in primary hyperparathyroidism is characteized by extremely high circulating levels of parathyroid hormone and acute onset of severe hypercalcemia. We describe a 62-year-old woman with parathyroid crisis probably due to an intraturnoral hemorrhage. Renal dysfunction reduced the effectiveness of preoperative management and continued to deteriorate for 5 days after parathyroidectomy. The normalization of serum calcium after parathyroidectomy delayed and it took 6 days. Maintenance of renal function is important for pre- and postoperative courses of the present case. The rapid decrease in serum parathyroid hormone after parathyroidectomy was followed by a rapid and transient (about fivefold) increase in serum alkaline phosphatase with peak value on the 10th postoperative day. This indicated that reversal phase from bone resorption (accelerated by parathyroid hormone) to bone formation lasted about 10 days under the conditions of the present case.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    International journal of legal medicine 107 (1994), S. 152-155 
    ISSN: 1437-1596
    Keywords: Ancient DNA ; Bone ; Soft tissue ; Automated DNA extraction ; PCR ; Sex determination ; alte DNA ; Knochen ; Weichgewebe automatisierte ; DNA-Extraktion ; PCR Geschlechtsbestimmung
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Law
    Description / Table of Contents: Zusammenfassung Für eine vergleichende Untersuchung von Knochen und Weichgewebe als Quellenmaterial für DNA-Analysen wurden südamerikanische, präkolumbische, männliche Mumien verwendet. Die Eignung der DNA-Extrakte beider Quellen wurde über ihre Effektivität als Ziel-DNA in PCR-Amplifikationen bewertet. Die Ergebnisse zeigen, daß bei Verwendung stark degradierten Materials Knochen den Weichgeweben für PCR-Analysen vorzuziehen sind. Dies scheint unabhängig von der spezifischen anatomischen Herkunft der Proben zu sein.
    Notes: Abstract South american precolumbian male mummies were employed as source material for a comparative investigation of bone and soft tissues by DNA analysis. The suitability of the DNA extracts from both sources was tested and evaluated by their effectiveness as target DNA in PCR amplifications. The results suggest that skeletal material should be given preference over soft tissues for PCR analysis if the material is severely degraded. This seems to be independent of the specific anatomical origin of the samples.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Methods in cell science 16 (1994), S. 211-215 
    ISSN: 1573-0603
    Keywords: Bone ; Bone sialoprotein ; Osteopontin ; Protein purification
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A protocol to extract and purify osteopontin, a protein with cell adhesion and mineral-crystal binding properties, from mineral-associated tissues is described. This procedure provides for the complete separation of osteopontin from bone sialoprotein, a mineralized tissue-specific protein with similar properties to that of osteopontin.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Anatomy and embryology 189 (1994), S. 259-274 
    ISSN: 1432-0568
    Keywords: Bone ; Cancellous ; Trabecular ; Age ; Osteoporosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract In an analysis of the 3D architecture of cancellous bone, two-dimensional techniques are of limited value. A simple technique employing stereophotographs of whole sections of lumbar vertebrate made possible a detailed description of the 3D structure of the normal fourth lumbar vertebral body and its changes with ageing and osteoporosis. Parallax measurements were used to calculate the real lengths of horizontal trabeculae. The bone presented a continuous spectrum of microstructure, from a honeycomb of tubes, to plates and braces and, finally, fragile rods. A distinct pattern was produced in osteoporotic samples by the removal of horizontal and selected vertical trabeculae followed by a thickening of the remaining vertical trabeculae in the peripheral regions. Very long, thin horizontal trabeculae were formed in all three zones (superior, middle and inferior) during this process. The observation of porotic architecture in intact specimens points to the inadequacy of the clinical criterion of the occurrence of a fracture in judging the osteoporotic state.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Anatomy and embryology 190 (1994), S. 339-349 
    ISSN: 1432-0568
    Keywords: Osteoclasts ; Osteoblasts ; Resorption ; Remodelling ; Dentine ; Bone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract In the normal adult human skeleton, new bone formation by osteoblasts restores the contours of bone surfaces following osteoclastic bone resorption, but the evidence for resorption-repair coupling remains circumstantial. To investigate whether sites of prior resorption, more than the surrounding unresorbed surface, attract osteoblasts or stimulate them to proliferate or make new matrix, we developed a simple in vitro system in which resorption-repair coupling occurs. Resorption pits were produced in mammalian dentine or bone slabs by culturing chick bone-derived cells on them for 2–3 days. The chick cells were swept off and the substrata reseeded with rat calvarial osteoblastic cells, which make bone nodules in vitro, for periods of up to 8 weeks. Cell positions and new bone formation were investigated by ordinary light microscopy, fluorescence and reflection confocal laser microscopy, and SEM, in stained and unstained samples. There was no evidence that the osteoblasts were especially attracted to, or influenced by, the sites of resorption in dentine or bone before cell confluence was reached. Bone formation was identified by light microscopy by the accumulation of matrix, staining with alizarin and calcein and by von Kossa's method, and confirmed by scanning electron microscopy (SEM) by using backscattered electron (BSE) and transmitted electron imaging of unembedded samples and BSE imaging of micro-milled embedded material. These new bone patches were located initially in the resorption pits. The model in vitro system may throw new light on the factors that control resorption-repair coupling in the mineralised tissues in vivo.
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  • 8
    ISSN: 1432-0568
    Keywords: Ectopic ossification ; Ossicles ; parasite infection ; Chondroid bone ; Bone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract This paper describes the development and tissues in mineralized ossicles in the musculature of Perca flavescens infected with metacercariae of the trematode Apophallus brevis. Analysis involved light microscopy, transmission and scanning electron microscopy, X-ray scanning electron microprobe analysis, and tetracycline labelling. Two to 14 days post-infection, fibroblast-like host cells stream towards the parasite cyst forming a fusiform cellular capsule. By 14 days post-infection the capsule differentiates into an inner hypertrophied layer, an extensive middle layer of fibroblast-like cells, and a thin outer layer of flattened fibroblast-like cells forming a fibrous sheath at the capsule/muscle interface. From 21–35 days post-infection, a bony tissue is deposited periosteally in an equatorial ring around the cyst. With time, additional tissue is secreted over the ring increasing its thickness and advancing the matrix front towards the poles of the ossicle. Plump osteoblast-like cells cover the developing ossicle and may become trapped within the matrix in lacunae encapsulated by collagen. By 63 days post-infection, medium-sized ossicles are morphologically similar to large cysts from perch captured in the wild; ovoid with two polarized canals, but lacking acellular or lamellar bone-like tissue. Mineralized ossicles contain calcium, phosphorus and oxygen. Large ossicles retrieved from perch given multiple doses of tetracycline revealed discrete fluorescent bands, indicative of incremental growth. Fully developed ossicles are composed of two skeletal tissues, an inner region of chondroid bone and an outer region of acellular, lamellar bone.
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Surgical and radiologic anatomy 16 (1994), S. 409-412 
    ISSN: 1279-8517
    Keywords: Nutrient foramina ; Bone ; Lower limb
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé Les foramens nourriciers de 269 os longs de membres inférieurs d'adultes ont été étudiés afin d'en préciser le nombre et le siège. L'index foraminal moyen était de 48,82 pour le fémur, 33,17 pour le tibia, 47,82 pour la fibula. Sur le fémur, les foramens sont le plus souvent doubles, situés au tiers moyen de la ligne âpre. Sur le tibia, le foramen est le plus souvent au tiers supérieur de la face postérieure. Enfin sur la fibula, il se situe en général au tiers moyen de face postérieure.
    Notes: Summary In this study a total of 269 adult lower limb long bones were examined to determine the number and location of the nutrient foramina in the shafts of bones. The mean of foraminal index was 48.82 for femur, 33.17 for tibia, and 47.82 for fibula. The number of foramina noted were: two on the linea aspera in the middle third of the femur, one on the posterior surface of the upper third of the tibia, and one on the posterior surface of the middle third of the fibula.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 54 (1994), S. 44-49 
    ISSN: 1432-0827
    Keywords: Bone ; Stress ; Elasticity ; Mechanical properties ; Calcium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract Magnesium (Mg) participates in the normal formation and remodeling of bone. However, little is known about effects of Mg status on the biomechanical function of bone. We examined gross morphometry and composition as well as biomechanical properties of the femurs of male rats fed diets adequate or deficient in Mg. Comparison of deficient animals and controls yielded a number of differences (all significant at P〈0.05). Mg-depleted animals exhibited slow growth, inefficient food utilization, and greatly reduced concentrations of Mg in both serum and femur ash. Compared with controls, femurs from depleted animals were shorter, but wet weights, diameters, and midfemoral cross-sectional areas showed no differences. Bone length was reduced to a greater degree than could be accounted for by differences in body weights between the groups. Bones of Mg-deficient rats contained less dry matter and less ash (which contained more Ca/g) than those of controls, along with a higher percentage of moisture. Significantly reduced bone strength in depleted animals was evident from the lighter loads supported at the elastic limit (yield point) and at fracture and from decreased stresses accompanying those loads. Modulus of elasticity, however, was not affected by Mg depletion. Different yield and breaking loads were related to different body weights of groups, but stresses were reduced for deficient bones even after adjusting for body size. Our data establish abnormal biomechanical behavior of cortical bone in Mg-deficient animals and emphasize the importance of measuring such functional properties of bone in the assessment of responses to altered metabolic conditions under experimental conditions.
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  • 11
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 54 (1994), S. 83-86 
    ISSN: 1432-0827
    Keywords: Ultrasound attenuation ; Bone ; Osteoporosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract Ultrasound transmission measurement through the os calcis is an emerging technique and a promising clinical tool for early assessment of osteoporosis. However, several previous studies showed that broadband ultrasonic attenuation (BUA) is sensitive to small variations in bone mass or structure. The os calcis is an inhomogeneous bone and therefore, the attenuation depends on the location in the os calcis. BUA distribution within the os calcis can be measured by rectilinear scanning over the entire bone. We used a mechanical scanning device with both unfocused and focused transducers. The spatial resolution of these was about 25 mm and 4 mm, respectively. There was good agreement (r=0.97) between the results with unfocused and focused transducers. In addition, imaging the variations of BUA is possible with the focused transducers, and high quality images are obtained. These images permit the selection of optimal regions of interest for ultrasound attenuation measurement.
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  • 12
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 54 (1994), S. 96-100 
    ISSN: 1432-0827
    Keywords: Bone ; Material quality ; Sound transmission ; Frequency of resonance ; Age ; Bone width
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract In women before and after the age of peak bone mass, identical values of bone mineral density (BMD) can be obtained. However, there is a much higher incidence of osteoporotic fractures in older women. We investigated whether a deterioration of bone material quality with increasing age might contribute to this phenomenon. Material properties of bone tissue can be characterized by the modulus of elasticity, which is correlated to the square of sound transmission velocity. In this study, sound transmission velocity was determined in cortical bone by measuring the frequency of resonance in the ulna in the direction of the bone's longitudinal axis and correcting the values by multiplying by ulna length. Validation of this method indicated acceptable reproducibility: interobserver variability determined as the mean coefficient of variation was 1.82%. In a clinical study, 21 young women (22.5±1.2 years old) were compared with 21 middle-aged women (52.9±2.7 years old). Pairs were matched that had identical values of BMD in the nondominant forearm at a location representing mainly cortical bone (SPA). The product of ulna length and frequency of resonance in the ulna in the younger women was found to be 61.4±5.8 m/second, and in the middle-aged women 55.7±4.5 m/second. The difference was highly significant with P〈0.005. Our results confirm recent findings indicating a deterioration of bone material quality independent of BMD with increasing age. As shown by comparing ulna width at the site of measurement of bone mineral density between both groups of women, the deterioration of bone material quality in ulnar cortical bone with increasing age might at least in part be functionally compensated by an increase of the moment of inertia due to greater bone width [8, 10].
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  • 13
    ISSN: 1432-0827
    Keywords: Helodermin ; Bone ; Cyclic AMP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract Helodermin and helospectin are peptides structurally similar to vasoactive intestinal polypeptide (VIP) which were recently isolated from the salivary gland venom of the lizard Heloderma suspectum. Pituitary adenylate cyclaseactivating polypeptide (PACAP) has been isolated from ovine hypothalamus and also shows sequence homology to VIP. A helodermin-like peptide has been detected by combined immunohistochemical and immunochemical techniques in the thyroid C-cells. In the present study, lizard helodermin was found to cause a time- and dose-dependent stimulation of cyclic AMP (cAMP) formation in neonatal mouse calvarial bones. Also, helospectin I, PACAP 27, and the C-terminally extended PACAP 38 stimulated cAMP accumulation in the mouse calvariae. The cAMP rise in response to helodermin was comparable to that induced by VIP, both in terms of potency and magnitude of the response. Helodermin, helospectin I, PACAP 27, and PACAP 38, at concentrations of 1 μmol/liter, stimulated cAMP accumulation in enzymatically isolated mouse calvarial bone cells. A significant response to all peptides was observed in both early and late released bone cells isolated from the calvariae, with low and high alkaline phosphatase activity, respectively. Helodermin and VIP stimulated cAMP accumulation in the cloned mouse calvarial osteoblastic cell line MC3T3-E1, in rat (UMR 106-01), and human (Saos-2) osteoblastic osteosarcoma cell lines, but not in the rat osteosarcoma cell line ROS 17/2.8. The effect of helodermin was synergistically and dose-dependently enhanced by forskolin (0.1 and 1 μmol/liter). These data show that bone cells, including osteoblasts, respond to several peptides of the VIP family, including helodermin, helospectin I, PACAP 27, and PACAP 38. Whether the responses are mediated via one or several receptor populations remains to be established. The finding that VIP and helodermin, at maximally effective concentrations, did not cause additive effect on cAMP formation in intact mouse calvariae suggests that these two agonists may use a common receptor.
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  • 14
    ISSN: 1432-0827
    Keywords: IL-1α ; IL-1β ; IL-1 receptor antagonist ; Bone ; Calcium ; Parathyroid hormone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract Both interleukin-1α (IL-1α) and interleukin-1β (IL-1β) are powerful stimulators of bone resorption in vivo and in vitro. Interleukin-1 receptor antagonist (IL-1ra) binds to many interleukin-1 receptors. It does not activate the receptor and effectively blocks the action of IL-1α and IL-1β. In this study, human recombinant IL-1ra, at 100-fold excess, was found to block bone resorption in cultured mouse calvaria due to IL-1β but not IL-1α. These observations may be explained by differential affinities of receptors for IL-1α, IL-1β and rhIL-1ra on target bone cells.
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  • 15
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 55 (1994), S. 376-380 
    ISSN: 1432-0827
    Keywords: Electromagnetic ; Bone ; Calcium ; Osteoblast
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract Low energy electromagnetic fields (EMF) exhibit a large number of biological effects. A major issue to be determined is “What is the lowest threshold of detection in which cells can respond to an EMF?” In these studies we demonstrate that a low-amplitude combined magnetic field (CMF) which induces a maximum potential gradient of 10-5 V/m is capable of increasing net calcium flux in human osteoblast-like cells. The increase in net calcium flux was frequency dependent, with a peak in the 15.3–16.3 Hz range with an apparent bandwidth of approximately 1 Hz. A model that characterizes the thermal noise limit indicates that nonspherical cell shape, resonant type dynamics, and signal averaging may all play a role in the transduction of lowamplitude EMF effects in biological systems.
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  • 16
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 55 (1994), S. 381-386 
    ISSN: 1432-0827
    Keywords: Acoustic microscopy ; Bone ; Collagen fiber ; Elastic anisotropy ; Mineral crystal
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract It has long been thought that collagen fibers within the bone matrix are deposited in an aligned pattern that channels mineral growth. If this model of bone structure is correct, both organic and inorganic phases of bone should have similar elastic anisotropy. Using an acoustic microscope, we measured longitudinal and transverse acoustic velocities of cortical specimens taken from 10 dog femurs before and after removal of either the mineral (using 10% EDTA) or collagen phases (using 7% sodium hypochlorite) and calculated longitudinal (CL) and transverse (CT) elastic coefficients. The anisotropy ratio (CL/CT) decreased significantly after demineralization (1.61 before versus 1.06 after, P〈0.0001, paired t-test). However, there was no significant change after decollagenization (1.51 before versus 1.48 after, P=0.617, paired t-test). We conclude that the orientation of mineral crystals is the primary determinant of bone anisotropy, and the collagen matrix within osteonal bone has little directional orientation.
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  • 17
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 54 (1994), S. 34-37 
    ISSN: 1432-0827
    Keywords: Magnesium ; Bone ; Aging ; Human
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract The present study was undertaken to reveal the magnesium distribution in human bone. Sixty human ribs, obtained from subjects aged 10–80 years of age, were used. Transverse sections were prepared from the middle region of the human ribs. Adjacent sections were ground to a thickness of about 1000 μm. One section was used for magnesium determination by atomic absorption spectrophotometry, and the other was used for analysis with X-ray microanalysis. Thirty micron thick samples were abraded continuously from the periosteal and the endosteal surfaces by abrasive microsampling, as previously described by Weatherell et al. [3]. Results showed that magnesium concentrations were higher in both the periosteal and endosteal surfaces and did not change with age in general, although it tended to be higher among teenagers and lower over 80 years old.
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  • 18
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 54 (1994), S. 179-185 
    ISSN: 1432-0827
    Keywords: Bone ; Drugs ; Trabecular ; Turnover ; Computer ; Model ; Sensitivity ; Activation frequency
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract A computer model of trabecular bone turnover has been developed, based on concepts of Jonathan Reeve [1]. This model predicts changes in bone volume by summing bone resorption and formation over a large number of remodeling sites. Clinical data [histomorphometry and bone mineral content (BMC)] from two clinical studies using an antiresorptive drug (etidronate disodium, EHDP) in post-menopausal osteoporosis were used to test the model. The results for BMC obtained from the EHDP and placebo groups in each study at 60 and 120 weeks were correctly predicted by the model from the histomorphometric data obtained from baseline and week 60 biopsies. The parameter in this model having the greatest influence on predicted changes in bone volume was found by sensitivity analysis to be activation frequency. These results suggest that the contribution of bone turnover to BMC can be predicted solely by considering the cell kinetics of the basic multicellular unit (BMU), and that, in the case of antiresorptive drugs, maximal effects on bone volume may be achieved by pharmacological reduction of activation frequency. The results also suggest that the present model may be useful in predicting in clinical studies the effects of EHDP and similar drugs on bone turnover.
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  • 19
    ISSN: 1432-0827
    Keywords: Calcium ; Lactate ; Acidosis ; Treadmill ; Bone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract The purpose of this study was to examine the influence of exercise on the serum concentrations of intact parathyroid hormone (PTH). Serum PTH and plasma lactate were measured in 15 well-trained men, 9 long-distance runners and 6 fire-fighters, during two running exercises. Test one consisted of 40-minute treadmill running with a stepwise increased load and test two consisted of 50-minute treadmill running with a constant velocity. When the load was step-wise increased, the PTH concentrations increased moderately at the slower running paces but reached a final value that was about 50% higher than the starting value. This rise occurred despite a concomitant increase of total serum calcium from 2.38±0.06 to 2.49±0.05 mmol/liter (P〈0.01). During the constant running exercise, the long-distance runners, but not the fire-fighters, displayed a significant increase in PTH concentrations although the rise in total serum calcium was similar in both groups. There was a weak correlation between the changes in PTH and lactate in both exercises. The findings demonstrate that both high and low intensity exercise enhance release of PTH in long-distance runners through a mechanism that does not involve serum calcium. This relationship might be of importance for bone mass in men performing long-distance training.
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  • 20
    ISSN: 1432-0827
    Keywords: Bone ; Diphosphonate ; Osteoporosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract During intermittent cyclical etidronate treatment, a lower extremity pain syndrome associated with stress fractures was observed in three osteoporotic patients. This report describes the development of stress fractures during initial cycles of treatment, with recurrence of symptoms in two patients when etidronate therapy was resumed. Further studies are needed to confirm whether stress fractures are associated with cyclic etidronate treatment and if so, the incidence and pathophysiology need to be determined.
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  • 21
    ISSN: 1432-0827
    Keywords: Pseudohypoparathyroidism ; Thiazide ; Kidney ; Bone ; Parathyroid hormone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract We compared the effect of orally administered 100 mg of hydrochlorothiazide (HCTZ) among eight patients with pseudohypoparathyroidism (PHP) type I, 11 patients with idiopathic hypoparathyroidism (IHP), and 12 patients with primary hyperparathyroidism (1oHPT). Patients with PHP type I or with IHP were studied during the treatment with 1α-hydroxylated metabolites of vitamin D3. HCTZ raised serum levels of calcium (Ca) in 1oHPT (P〈0.001) and PHP type I (P〈0.01) but did not increase urinary excretion of Ca. Serum parathyroid hormone (PTH) in PHP type I decreased (P〈0.02) after HCTZ administration in response to the increase in serum Ca. HCTZ did not raise serum levels of Ca in IHP but increased urinary excretion of Ca in this group (P〈0.01). HCTZ suppressed tubular reabsorption of phosphate (P) in IHP (P〈0.01) and 1oHPT (P〈0.05) but not in PHP type I. Urinary excretion of cAMP did not change after HCTZ administration in PHP type I, IHP, or 1oHPT. Endogenous PTH modulated the effects of HCTZ on Ca mobilization from bone and renal reabsorption of Ca in PHP type I with normal or high serum levels of PTH and in 1oHPT with high serum levels of PTH. The inhibitory effect of HCTZ on renal tubular reabsorption of P (probably from proximal tubules) was independent of PTH. The resistance to this inhibitory effect of HCTZ on P reabsorption in PHP type I suggested a proximal tubular dysfunction in this disorder.
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  • 22
    Electronic Resource
    Electronic Resource
    Springer
    Calcified tissue international 55 (1994), S. 230-235 
    ISSN: 1432-0827
    Keywords: Noncollagenous ; Proteins ; Bone ; Sialo-protein ; Osteopontin ; Osteocalcin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract Quantitative analyses of a wide variety of different solvents used for the extraction of several of the noncollagenous proteins of fully mineralized chicken bone powder were carried out to compare both the effectiveness of various procedures and the distribution of specific proteins which were solubilized. Extraction procedures included solutions of 6 M guanidine-HCl, pH 7.0, 0.5 M EDTA, pH 7.4, 0.3 N citric acid, 0.3 N HCl, 0.3 N formic acid, and 0.3 N acetic acid. Chelation of calcium ions by EDTA and dissolution of the mineral phase by acid extraction released 95% or more of the total calcium content of the bone powder by 48 hours, guanidine-HCl released less than 20% or less of the total calcium content even when extraction was carried out by 168 hours. Moreover, although guanidine-HCl solubilized a significant amount of collagen as gelatin, essentially none of the phosphoproteins, osteocalcin, or the proteoglycan decorin were solubilized, as detected by immunological techniques. In contrast, extraction of the mineralized bone powder by HCl and formic acid was very efficient in selectively solubilizing osteocalcin and osteopontin, while bone sialoprotein was selectively released by EDTA, and solubilized to a lesser extent by formic acid. Similarly, EDTA selectively removed decorin compared with HCl, formic, acetic, or citric acids. Only small amounts of osteopontin and osteocalcin were detected in the acetic acid extracts. These results provide methods for the selective solubilization of several different major, noncollagenous proteins from mineralized bone which should significantly aid in maximizing the amount of the specific protein recovered, and the ease with which the various proteins can be purified. The data also provide some insight into the intrinsic solubility characteristics of collaten, the specific noncollagenous proteins, and their potential association with each other and the mineral phase.
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  • 23
    ISSN: 1432-0827
    Keywords: Bone ; Biochemical markers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Abstract The influence of chronic and acute exposure to parathyroid hormone (PTH) on formation and breakdown of type I collagen, using two recently developed radioimmunoassays for serum PICP (the carboxyterminal propeptide of type I procollagen) and serum ICTP (the carboxyterminal telopeptide of type I collagen), have been evaluated. Fasting morning values were obtained from 18 women with primary hyperparathyroidism (HPT) and an equal number of age-matched, healthy controls. A 24-hour infusion of synthetic human parathyroid hormone (PTH 1-38) was performed in 14 healthy females. The patients with HPT had higher values for serum ICTP than the controls (6.0±3.0 and 4.1±2.1 μg/liter; P〈0.05), whereas the serum PICP concentrations were not different (170±72 and 151±65 μg/liter; n.s.). During infusion of PTH in healthy subjects, there was an increase of the serum ICTP concentrations (from 3.6±1.3 to 4.4±1.8 μg/liter; P〈0.001) whereas those of serum PICP decreased (from 185±78 to 118±42 μg/liter; P≤0.0001). The increase of serum ICTP during infusion of PTH was positively related to the increase of serum calcium and other indices of bone resorption, i.e., fasting urinary excretions of hydroxyproline and calcium. The decrease of serum PICP was also related to the changes of serum ICTP and hydroxyproline in urine, serum calcium, and alkaline phosphatase but not to osteocalcin, an established marker of osteoblastic activity. The findings support the fact that serum ICTP is a valuable method for evaluating bone resorption and is also easy to perform. Furthermore, the discordant results for the different markers of osteoblastic activity indicat that they reflect different functions of the cell.
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  • 24
    ISSN: 1432-1939
    Keywords: Carbon isotopes ; Arctic fox ; Diet ; Bone ; Collagen
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We used stable carbon isotopes to analyse individual variation in arctic fox diet. We extracted collagen from bones (the lower jaw), and measured stable carbon isotopes. The foxes came from three different localities: Iceland, where both microtines and reindeer are rare; west Greenland, where microtines are absent; and Sweden, where scat analyses showed the primary food to be microtine rodents and reindeer. The Icelandic samples included foxes from both coastal and inland habitats, the Swedish sample came from an inland area, and the Greenland sample from coastal sites. The spatial variation in the isotopic pattern followed a basic division between marine and terrestrial sources of protein. Arctic foxes from inland sites had δ13C values of −21.4 (Iceland) and −20.4‰ (Sweden), showing typical terrestrial values. Coastal foxes from Greenland had typical marine values of −14.9‰, whereas coastal foxes from Iceland had intermediate values of −17.7‰. However, there was individual variation within each sample, probably caused by habitat heterogeneity and territoriality among foxes. The variation on a larger scale was related to the availability of different food items. These results were in accordance with other dietary analyses based on scat analyses. This is the first time that stable isotopes have been used to reveal individual dietary patterns. Our study also indicated that isotopic values can be used on a global scale.
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  • 25
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    European journal of orthopaedic surgery & traumatology 4 (1994), S. 21-21 
    ISSN: 1432-1068
    Keywords: Metastases ; Bone ; Métastases osseuses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé Dans cette série de cas, vus par des chirurgiens, une métastase sur deux est traitée au stade de fracture. Une fracture sur deux est survenue en l'absence de toute symptomatologie évocatrice.
    Notes: Abstract This series of surgical patients shows that 50% of bony metastases are complicated by a fracture. Of these, 50% occurred without any preceding symptoms or signs.
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  • 26
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    European journal of orthopaedic surgery & traumatology 4 (1994), S. 5-8 
    ISSN: 1432-1068
    Keywords: Bone ; Metastases ; Osteoclast ; Cytokines ; Métastases osseuses ; Ostéoclaste ; Cytokines
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé Les métastases ostéolytiques des cancers sont à l'origine de douleurs et de fractures pathologiques responsables d'une importante invalidité altérant la qualité de survie des patients. Ces destructions osseuses sont dues à une augmentation de la résorption osseuse, liée à la stimulation des ostéoclastes par des médiateurs sécrétés localement par les cellules tumorales et médullaires. Les bisphosphonates, puissants agents anti-ostéoclastiques, ont une bonne efficacité sur les douleurs osseuses, la prévention des fractures et des épisodes hypercalcémiques.
    Notes: Abstract Osteolytic metastases are the cause of pain and pathological fractures with marked disability affecting the patient's quality of life. The bone destruction is due to an increase of bone resorption, linked to stimulation of osteoclasts by mediators secreted locally by tumour and medullary cells. Bisphosphonates, strong anti-osteoclastic agents, are effective for bone pain, prevention of fractures and the treatment of hypercalcaemic episodes.
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  • 27
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    European journal of orthopaedic surgery & traumatology 4 (1994), S. 3-4 
    ISSN: 1432-1068
    Keywords: Metastases ; Bone ; Métastases osseuses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé Le traitement des métastases osseuses a vu ses modalités évoluer en fonction d'améliorations obtenues dans la prise en charge du cancer primitif et en raison d'une meilleure compréhension des phénomènes biologiques constatés au niveau de l'os métastatique. Du simple traitement palliatif des douleurs osseuses, la thérapeutique s'est orientée vers la prévention des complications dégradantes que sont les fractures et les paraplégies. Des résultats intéressants sont obtenus actuellement par l'utilisation de traitements chimiques luttant contre l'ostéolyse métastatique.
    Notes: Abstract The treatment of bony metastases has developed due to improvements in the care of the primary cancer and due to a better understanding of the biological phenomenon in the metastasis. From simple palliative treatment of bone pain, treatment is now being directed towards the prevention of the complications of metastasis, such as fractures and paraplegia. Interesting results are currently being obtained by using chemotherapy for treatment of metastatic osteolysis.
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  • 28
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    European journal of orthopaedic surgery & traumatology 4 (1994), S. 11-12 
    ISSN: 1432-1068
    Keywords: Radiotherapy ; Metastases ; Bone ; Radiothérapie ; Métastases osseuses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé Les techniques d'irradiation antalgique sont différentes s'il s'agit de métastases uniques (champs séparés) ou multiples (irradiation hémicorporelle antalgique). Un procédé original d'irradiation hémicorporelle précoce est décrit.
    Notes: Abstract Irradiation for bone pain depends on whether the metastasis is solitary (separate field) or disseminated (antalgic half body irradiation). A new original procedure of early halfbody irradiation is described.
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  • 29
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    European journal of orthopaedic surgery & traumatology 4 (1994), S. 13-15 
    ISSN: 1432-1068
    Keywords: Thyroid ; Bone ; Metastases ; Métastases osseuses ; Thyroïde
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé En 25 ans, 1061 cancers de la thyroïde ont été pris en charge. 42 patients étaient atteints de métastases osseuses, unique ou multiples. La forme histologique la moins métastasiante est le cancer papillaire qui de plus, survient chez les sujets jeunes. Deux stades doivent être différentiés dans la maladie métastasiante. La métastase osseuse, unique, est découverte à la scintigraphie, les radiographies sont normales, l'irradiation à l'iode éventuellement associée au cobalt peut la stériliser. La métastase osseuse est visible sur les radiographies, elle n'est pas unique, la scintigraphie objectivera d'autres foyers hyperfixants, le traitement chirurgical, palliatif, aura pour effet de réduire la taille tumorale pour que l'irradiation puisse la stériliser ainsi que les autres foyers fixants.
    Notes: Abstract Over 25 years, 1601 thyroid cancers were treated. 42 patients had solitary or multiple bony metastases. The least metastatic histological form is papillary cancer, which in addition occurs in young subjects. There are two stages of the metastatic disease. The solitary bony metastasis, discovered on scintigraphy with normal Xrays, may be effectively treated by irradiation with iodine with the possible addition of cobalt. Multiple metastases, visible on plain X-ray with other hyperfixation areas on scintigraphy, is best treated by palliative surgery to reduce size so that it can be sterilised by irradiation at the same time as other hyperfixation sites.
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  • 30
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    European journal of orthopaedic surgery & traumatology 4 (1994), S. 9-10 
    ISSN: 1432-1068
    Keywords: Metastases ; Bone ; Métastases osseuses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Description / Table of Contents: Résumé L'histo-pronostic, comme l'utilisation de marqueurs, sont des notions relativement nouvelles qui facilitent la prise en charge de certains cancers. Hormonothérapie et chimiothérapie doivent être discutées en fonction de leurs avantages et de leurs inconvénients. Toutes les ressources modernes contre la douleur doivent être utilisées.
    Notes: Abstract The histological prognosis and use of markers are new concepts, which are of value in managing some cancers. Hormonal therapy and chemotherapy should be considered, along with their advantages and disadvantages. All contemporary modalities of treatment against pain should be used.
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  • 31
    ISSN: 1432-2161
    Keywords: Cystic angiomatosis ; Hemangiomatosis ; Lymphangiomatosis ; Osteosclerosis ; Bone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Five unusual cases of cystic angiomatosis of bone which presented with the radiologic appearance of osteoblastic lesions are reported. Three patients were female (ages 37, 41, and 65 years) and two were male (ages 24 and 66 years). Although cystic angiomatosis of bone usually produces widespread osteolytic lesions with a honeycombed appearance in the skeletal system, multiple osteoblastic lesions mimicking metastatic osteoblastic carcinoma are sometimes seen. This radiological presentation has not been well emphasized in previous reports. Histologically, in addition to the angiomatous lesions, both mature thickened lamellar bone trabeculae and immature trabeculae of woven bone were found. In one of our patients, increasing density of the osteoblastic lesions was noted over time. One previous study has suggested that the age of the lesions of cystic angiomatosis is related to radiographic density. It is important to recognize this uncommon variant of cystic angiomatosis and to include this entity among the radiologic differential diagnoses when multiple osteoblastic lesions are encountered.
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  • 32
    ISSN: 1432-0878
    Keywords: Bone ; Ossification ; Cartilage ; Matrix ; Chondrocytes ; Complement ; Matrix metalloproteinase ; Immunocytochemistry ; Man
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The first component of complement $$C\bar 1s$$ has been shown to degrade type I and type II collagens (Yamaguchi et al. 1990), the latter of which is a major constituent of the cartilage matrix. In order to understand the physiological roles of $$C\bar 1s$$ in cartilage resorption, the expression of C1s was examined by immunohistochemistry in the primary ossification center where the matrix is removed and replaced by bone marrow. Hypertrophic chondrocytes, endothelium and hematogenous elements in the capillary buds were intensely stained by a monoclonal antibody against C1s. Matrix metalloproteinase 9 (MMP-9, 92kDa gelatinase/type IV collagenase) was also immunolocalized in hypertrophic chondrocytes, mesenchymal cells in the primitive bone marrow and the cartilage matrix adjacent to the marrow. In addition, $$C\bar 1s$$ was found to activate the zymogen of MMP-9. These observations suggest that $$C\bar 1s$$ and MMP-9 coordinately participate in matrix degradation in cartilage.
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  • 33
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    Annals of biomedical engineering 22 (1994), S. 404-415 
    ISSN: 1573-9686
    Keywords: Bone ; Ultrasound ; Interfacial bonding ; Anisotropy ; Fluoride
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Technology
    Notes: Abstract The mechanical properties of composites are influenced, in part, by the volume fraction, orientation, constituent mechanical properties, and interfacial bonding. Cortical bone tissue represents a short-fibered biological composite where the hydroxyapatite phase is embedded in an organic matrix composed of type I collagen and other noncollagenous proteins. Destructive mechanical testing has revealed that fluoride ion treatment significantly lowers theZ-axis tensile and compressive properties of cortical bone through a constituent interfacial debonding mechanism. The present ultrasonic data indicates that fluoride ion treatment significantly alters the longitudinal velocity in theZ-axis as well as the circumferential and radial axes of cortical bone. This suggests that the distribution of constituents and interfacial bonding amongst them may contribute to the anisotropic nature of bone tissue.
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  • 34
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    Journal of statistical physics 77 (1994), S. 125-143 
    ISSN: 1572-9613
    Keywords: Bone ; collagen ; Voronoi tesselations ; small-angle scattering ; structure function ; calcified tissue
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract Randomly colored space tesselations are considered as models for the mineral/organic structure of bone. First, it is shown that the structure function for such models is always proportional to the average form factor of the individual tiles and hence independent of the mineral density in the sample. Then the structure function is calculated for three such models: for model I, based on a hexagonal, and model 2, on a Poisson-Voronoi tesselation of the plane and for model 3, based on a random tesselation of the line. These results are compared to experimental structure functions measured by small-angle scattering and excellent agreement is obtained between model 2 and the bone from mice and rats, as well as between model 3 and calcified turkey leg tendon. Divergent conclusions following recent experiments by small-angle x-ray scattering and by electron microscopy are discussed in the light of these structural models and an explanation is proposed which might remove the discrepancy.
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  • 35
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    Annals of biomedical engineering 22 (1994), S. 194-201 
    ISSN: 1573-9686
    Keywords: Blood/Fluid flow ; Bone ; Laser ; Material properties
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Technology
    Notes: Abstract This project was undertaken to establish if the integral circulation had any effects upon the mechanical behavior of bone. The influence of blood flow in the rabbit tibia on the strain induced at the bone surface when under load was assessed. Recordings were taken from three adult and three immature New Zealand White rabbits which had previously had both their tibiae pinned with modified orthopedic pins. Strain readings were obtained from the exposed mid-shaft of the tibia of both hind legs before, during and after blood flow changes. The loading was static and used to maintain a strain of 250 μstrain in adult animals and 180 μstrain in immature animals prior to variation in blood flow. The blood flow was altered by means of a tourniquet inflated to 80 mm Hg and placed medial to the pinned tibia; it was inflated for a specific time (≈40 minutes) during the experimental loading. Reducing the blood flow appeared to alter the strain recorded at the bone surface while the applied load across the pins remained constant. An initial effect when there was reduced perfusion was that the strain increased following a reduction in blood flow. The strain then began to decrease in magnitude on the compressive aspect coincident with release of the cuff to a level below the value of the initial normally perfused bone. Upon return of the blood supply to normal levels following the initial hyperaemic phase, the strain value increased to a value comparable with that of normally perfused bone. During the hyperemic phase, found on the compressive aspect of the tibia, the measured strain decreased to a value below the initial loaded strain despite the load remaining constant. This demonstrates that the presence of a normal cardiovascular perfusion actually stiffens the bone while a reduction in perfusion allows the bone to deform more readily for the same external loading.
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  • 36
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    International Journal of Quantum Chemistry 50 (1994), S. 317-332 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a systematic comparison of the correlation contribution at the level of the second-order polarization propagator approximation (SOPPA) and MP2 to the static dipole polarizability of (1) Be, BeH-, BH, CH+, MgH-, AIH, SiH+, and GeH+; (2) BH3, CH4, NH3, H2O, HF, BF, and F2; and (3) N2, CO, CN-, HCN, C2H2, and HCHO. Fairly extended basis sets were used in the calculations. We find that the agreement with experimental values is improved in SOPPA and MP.2 over the results at the SCF level. The signs and magnitudes of the correlation contribution in SOPPA are similar to those obtained in analytical derivative MP2 calculations. However, it is not possible to say, in general, which method gives the largest correlation contribution or the best agreement with experiment, nor is it possible to make a priori prediction of the sign of the correlation contribution. For the first group of molecules, which have a quasi-degenerate ground state, additional CCDPPA and CCSDPPA calculations were performed and compared with polarizabilities obtained as analytical/numerical derivatives of the CCD and CCSD energies. The CCSDPPA results were found to be in better agreement with other calculations than were the SOPPA results, demonstrating the necessity of using methods based on infinite-order perturbation theory for these systems. © 1994 John Wiley & Sons, Inc.
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  • 37
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    International Journal of Quantum Chemistry 51 (1994), S. 313-318 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio (TZV*, SBK*, and 3-21G* or 6-31G* basis sets) calculations were performed to predict the geometries and gas-phase proton affinities of Li2O, LiOH, LiNH2, Na2O, NaOH, NaNH2, K2O, KOH, and KNH2. © 1994 John Wiley & Sons, Inc.
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  • 38
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    International Journal of Quantum Chemistry 51 (1994), S. 285-291 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To accelerate the convergence of the HH expansion, we modified the HH-GLF method, a new simple hyperspherical harmonic method proposed recently by us, into the CFHH-GLF method. Applications of the CFHH-GLF method to the three-body systems He and e- e- e+ exhibit very fast convergence with number of HH basis sets. With only 36 HH and five GLF, we obtain the ground-state energy of -2.90371 au for He, compared with the exact value of -2.90372 au, and with only 36 HH and 10 GLF, we obtained the ground-state energy of -0.26188 au for e- e- e+, compared with the exact value of -0.26200 au. We formulate the CFHH-GLF method in this article. © 1994 John Wiley & Sons, Inc.
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  • 39
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    International Journal of Quantum Chemistry 52 (1994), S. 147-152 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An iso-energy cutoff scheme is introduced for the calculation of the potential of mean force between two ions in water. The cutoff criterion is based on the optimal interaction of the water dipole with the ion pair, for which analytical expressions are derived. Formulas are also derived to characterize the solvent reorganization contribution to the potential of mean force. Treatment of the contributions from waters outside the cutoff is also discussed. © 1994 John Wiley & Sons, Inc.
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  • 40
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    International Journal of Quantum Chemistry 52 (1994), S. 267-280 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The elongation method, a theoretical tool to synthesize the electronic states of polymers, is applied within the framework of the density functional approach and using a linear combination of Gaussian-type orbitals. In this treatment, the wave function of a cluster is localized and the interaction with an attacking monomer is self-consistently calculated according to the Kohn-Sham equation. The reliability and the applicability of our treatment are examined by the application to a random hydrogen molecule cluster, comparing the results with those obtained by the usual diagonalization method for the whole system. The results show that this treatment efficiently provides the electronic states of the end part of aperiodic polymers. © 1994 John Wiley & Sons, Inc.
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  • 41
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    International Journal of Quantum Chemistry 52 (1994), S. 301-308 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new approach to the description of the formation of spherulites in a polymer solution is proposed. It is based on an analytical scheme that takes into account the mass conservation law as a fundamental evolution equation. Three physically interesting cases are considered, both which, on deterministic and stochastic levels, can reflect an asymptotic behavior characteristic for spherulites, namely, R(t) ∝ t, where R(t) is a radius of the spherulite measured at instant t. A few examples of systems similar to that under study are mentioned. © 1994 John Wiley & Sons, Inc.
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  • 42
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    International Journal of Quantum Chemistry 52 (1994), S. 309-319 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An elongation method, which had already been proposed to calculate the electronic structure of aperiodic polymer efficiently, was applied to atactic polypropylene, with the approximation level of the extended Hückel method. The atomic populations thus calculated were found to be dependent sensitively on the tacticity of the polymer. Next, this elongation method was applied to the π-electron stacking system composed of ethylene and butadiene, etc. Excellent agreement was found between the elongation method and the usual extended Hückel calculations. Thus, the elongation method can confidently be applied to π-electron molecular crystal systems. Finally, the local density of states of polyacetylene with both cis-transoid and trans-cisoid structures was calculated. We found that the site with large local density of state in the valence band of a polymer chain gives large electron transfer to the site with large local density of state in the conduction band of another polymer chain. © 1994 John Wiley & Sons, Inc.
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  • 43
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    International Journal of Quantum Chemistry 52 (1994), S. 395-412 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Structural and electronic properties of hydrogen-bonded infinite chains of hydrogen cyanide and formamide molecules have been investigated by the ab initio crystal orbital method using several, partly highly polarized, atomic basis sets of increasing size at the Hartree-Fock (HF) level and by including electron correlation effects in the second order of Møller-Plesset perturbation theory. The results obtained show that hydrogen bonding in molecular crystals of the type investigated is a highly cooperative phenomenon, both from the structural and energetic points of view. Comparison with clusters of up to four monomers demonstrate how various structural parameters converge toward their limiting values in the infinite system. The results obtained for infinite HCN chains show an excellent agreement with those observed for solid HCN, whereas the infinite formamide chain proves to be a reasonable model for the corresponding liquid phase. © 1994 John Wiley & Sons, Inc.
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  • 44
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    International Journal of Quantum Chemistry 52 (1994), S. 413-423 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The many-electron system in one and two dimensions are studied within the geminal approach. The analytical expressions for the wave functions and ground-state energies are obtained for a number of 1-D and 2-D systems: conjugated polymers, organic conductors, 2-D conductors with square lattices, and others. It is shown that electron excitations of a kink type can exist in 2-D systems with mixed valency. In this case, the correlation pairing of current carriers arises as a result of correlation effects leading to superconducting properties of the system. © 1994 John Wiley & Sons, Inc.
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  • 45
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    International Journal of Quantum Chemistry 52 (1994), S. 425-435 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The multiparticle correlation expansion for the entropy of a classical monatomic liquid is presented. This entropy expresses the physical picture in which there is no free particle motion, but, rather, each atom moves within a cage formed by its neighbors. The liquid expansion, including only pair correlations, gives an excellent account of the experimental entropy of most liquid metals, of liquid argon, and of the hard-sphere liquid. The pair correlation entropy is well approximated by a universal function of temperature. Higher-order correlation entropy, due to n-particle irreducible correlations for n ≥ 3, is significant in only a few liquid metals, and its occurrence suggests the presence of n-body forces. When the liquid theory is applied to the study of melting, we discover the important classification of normal and anomalous melting, according to whether there is not or is a significant change in the electronic structure upon melting, and we discover the universal disordering entropy for melting of a monatomic crystal. Interesting directions for future research are extension to include orientational correlations of molecules, theoretical calculation of the entropy of water, application to the entropy of the amorphous state, and correlational entropy of compressed argon. We clarify the relation among different entropy expansions in the recent literature. © 1994 John Wiley & Sons, Inc.
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  • 46
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    International Journal of Quantum Chemistry 49 (1994) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 47
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    International Journal of Quantum Chemistry 49 (1994), S. 11-19 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Möbius transformations recently proposed for integrating functions with a sharp peak close to a single boundary of integration (H.H.H. Homeier and E.O. Steinborn, J. Comput. Phys. 87, 61, 1990) are used to extend Ruedenberg's algorithm for two-center exchange integrals to cases with very diffuse STOs. © 1994 John Wiley & Sons, Inc.
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  • 48
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    International Journal of Quantum Chemistry 52 (1994), S. 731-765 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The first implementation of the intrinsic reaction coordinate (IRC) method within the density functional theory (DFT) framework is presented. The implementation has been applied to four different types of chemical reactions represented by the isomerization process, HCN = HNC (A); the SN2 process, H- + CH4 = CH4 + H- (B); the exchange process, H· + HX = HX + H· (X = F,Cl) (C); and the elimination process, C2H5Cl = C2H4 + HCl (D). The present study presents for each process optimized structures and calculated harmonic vibrational frequencies for the reactant(s), the transition state, and the product(s) along with the IRC path connecting the stationary points. The calculations were carried out within the local density approximation (LDA) as well as the LDA/NL scheme where the LDA energy expression is augmented by Perdew's and Becke's nonlocal (NL) corrections. The LDA and LDA/NL results are compared with each other as well as the best available ab initio calculations and experimental data. For reaction (D), ab initio calculations based on MP2 geometries and MP4SDTQ energies have been added due to the lack of accurate published post-HF calculations on this process. A detailed discussion is provided on the efficiency of the IRC algorithms, the relative accuracy of the DFT and ab initio schemes, as well as the reaction mechanisms of the four reactions. It is concluded that the LDA/NL scheme affords the same accuracy as does the MP4 method. The post-HF methods seem to overestimate activation energies, whereas the corresponding LDA/NL estimates are too low. The LDA activation energies are even lower than the LDA/NL counterparts. The incorporation of the IRC method into the DFT framework provides a promising and reliable tool for probing the chemical reaction path on the potential energy surfaces, even for large-size systems. IRC calculations by ab initio methods of an accuracy similar to the LDA/NL scheme, such as the MP4 scheme, are not feasible. © John Wiley & Sons, Inc.
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  • 49
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    International Journal of Quantum Chemistry 52 (1994), S. 809-816 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The first discussion of the dynamics of Jahn-Teller systems in terms of the electronic density as the fundamental variable was given by W.J. Clinton in 1960, where the degenerate electronic configuration of a Jahn-Teller molecule was interpreted in terms of the infinite number of ways in which the charge distribution can be oriented for the same energy. The moving nuclear framework serves as the perturbation necessary to define the orientation of the charge density, with no activation energy required to put the charge cloud into motion. Recently, this notion of the electronic charge cloud in a Jahn-Teller molecule sweeping out the potential surface over which the nuclei move has found mathematical expression in our work in terms of a generalized electronic current density in nuclear-coordinate space [N. Sukumar and B.M. Deb, Int. J. Quantum Chem. 40, 501 (1991)]. The introduction of the electronic phase as a function of both electronic and nuclear coordinates, in addition to the electronic density, is a crucial component of this formulation. In the present work, the density-based treatment is extended to the nonadiabatic situation, with the Born couplings interpreted as nonadiabatic currents in parameter space. Abelian and non-Abelian gauge transformations of these currents are discussed. © John Wiley & Sons, Inc.
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  • 50
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    International Journal of Quantum Chemistry 49 (1994), S. 133-134 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 51
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    International Journal of Quantum Chemistry 52 (1994), S. 935-945 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Second-order density functional methods are used to introduce the electron correlation in Hartree-Fock (HF) ab initio electronic energy calculations of three-dimensional potential energy surfaces (PES). We analyze the behavior of these methods in PES calculations by applying them to the Li + FH reaction, which has been considered a prototype of the elementary atom-diatom reactions. This system has been studied also by the usual techniques, allowing a point-by-point (for a total of 317 grid points) comparison for the lowest 2A' adiabatic state. In particular, we compare the results obtained using the HF, Møller-Plesset (MP3 level), and configuration interaction (CISD and MRDCI levels) methods with the corresponding results obtained using the Colle-Salvetti (CS) and Moscardó-San Fabián (MSF) procedures using the HF results as the starting point. We found that the CS and MSF procedures support the prediction of a shallow well in the entrance channel that deepens slightly away from collinearity and disappears for a bond angle Θ 〈 74°. We also found that the constrained saddle-point positions remain essentially constant from Θ = 180°-90° and are clearly in the exit channel as for the MRDCI approach (corresponding to the best results). In conclusion, there is a good overall agreement, but there is a question in which this agreement is less pronounced: the heights of the saddle points including the transition state. In particular, the transition-state height is about 3 kcal/mol higher than the more accurate value obtained with the MRDCI approach. However, the second-order density functional methods have been capable of reducing the HF barrier from 18 to 9 kcal/mol (all of these values obtained by spline interpolation), the latter value being very similar to the CISD result. © 1994 John Wiley & Sons, Inc.
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  • 52
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    International Journal of Quantum Chemistry 49 (1994), S. 291-298 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: For the first time, we obtain practical density matrices approximately N-representable by correlated-determinant wave functions, which are functionals of the electron density and entirely defined by information obtainable from the X-ray coherent diffraction experiment. © 1994 John Wiley & Sons, Inc.
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  • 53
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    International Journal of Quantum Chemistry 49 (1994), S. 239-251 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Chemical binding is modeled through interatomic charge transfer and accumulation of electron density at the bond center using the concepts of electronegativity and hardness parameters defined for the bond region. The generalized electronegativity and hardness parameters for the up- and down-spin electrons are also defined within the framework of spin-polarized density functional theory, leading to the formulation of covalent binding in molecules in terms of a two-way flow of unpaired electrons between the atoms. The associated energy changes corresponding to these descriptions are shown to provide quite accurate predictions of bond energies for simple heteronuclear diatomic molecules. © 1994 John Wiley & Sons, Inc.
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  • 54
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    International Journal of Quantum Chemistry 52 (1994), S. 1247-1247 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 55
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    International Journal of Quantum Chemistry 52 (1994), S. 1229-1243 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The coordination chemistry of the zinc ion in the active site of alcohol dehydrogenase has been studied by the ab initio Hartree-Fock method. Geometry optimizations were performed using analytical gradients and basis sets of double-zeta quality. Correlation effects were included at the MP2 level. The active site was modeled by Zn(HS)2XL(H2O)0-2, where X denotes ammonia or imidazole and L denotes water, methanol, ethanol, or the corresponding aldehydes or anions. It is shown that with uncharged L-ligands the four-coordinate complexes are about 20, 17, and 40kJ/mol more stable than are the corresponding three-, five-, and six-coordinate complexes, respectively. If the L-ligand is negatively charged, only the four-coordinate complexes are stable. These results suggest that the active-site zinc ion in alcohol dehydrogenase prefers a coordination number of four during the catalytic reaction, especially when the nonprotein ligand is negatively charged. Ligand exchange at the zinc ion is likely to proceed by an associative mechanism with intermittent formation of a five-coordinate complex. The results lend no support to mechanistic proposals attributing an important catalytic role to a negatively charged five-coordinate hydroxide or alkoxide ligand. © 1994 John Wiley & Sons, Inc.
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  • 56
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    International Journal of Quantum Chemistry 49 (1994), S. 495-509 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Unrestricted Hartree-Fock, coupled-cluster calculations are reported for the ground state of NeH+ using atomic basis sets of increasing size and accuracy for both Ne and H. The goal is to determine the basis set and coupled-cluster level of calculation needed to obtain a NeH+ potential energy curve of known accuracy. Here, it is shown that calculations using a quintuple zeta basis at the coupled-cluster singles and doubles level with noniterative triples, CCSD(T), predict a Ne - H bond dissociation energy that is within about 0.01 eV of the exact Born-Oppenheimer molecular electronic structure result. Spectroscopic constants determined using the Simons-Parr-Finlan procedure are found to be in very good agreement with the experimental results. Calculations at the augmented quadruple zeta level for the two lowest triplet excited states of the NeH+ species are presented. Both of these states separate into ground-state Ne+ and H(1s). The resulting potential curves predict stable minima at the SCF, CCSD, and CCSD(T) levels with dissociation energies of about 0.07 eV. Spectroscopic constants from the potential curves and dissociation constants are reported. © 1994 John Wiley & Sons, Inc.
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  • 57
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    International Journal of Quantum Chemistry 49 (1994), S. 539-548 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A set of exact conditions is compiled for the purpose of developing and testing approximations for the exchange-correlation energy as a functional of the electron density. Special emphasis is placed upon recently developed density-scaling relationships. Commonly used generalized gradient approximations are compared against several of these conditions. A direct tabular comparison of these functionals (not of calculated properties) with one another is also made. © 1994 John Wiley & Sons, Inc.
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  • 58
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    International Journal of Quantum Chemistry 49 (1994), S. 527-537 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have demonstrated molecular dynamics simulations using a combination of the classical molecular dynamics with density functional theory for argon clusters. Three different molecular dynamics schemes, which differ in their treatment of the potential energy and forces, have been carried out. The first uses a Lennard-Jones potential. In the second, the potential is computed using the Harris functional, and in the third, a combination of Lennard-Jones and Harris functional potentials is used. In addition to direct examination of the trajectories, the velocity autocorrelation function and its power spectrum have been computed to demonstrate the agreement between these three methods. The present studies show that a scheme that used a combination of model potentials and density functional theory provides a very useful tool for the dynamics simulation of systems that contain some fragments in which the analytical model potentials are not available. © 1994 John Wiley & Sons, Inc.
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  • 59
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    International Journal of Quantum Chemistry 49 (1994), S. 511-526 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Local spin density (LSD) methods were used to study the concerted 1,3-dipolar cycloadditions for fulminic acid plus acetylene, fulminic acid plus ethylene, and nitrone plus ethylene. Cartesian Gaussian double-zeta split-valence basis sets augmented with one set of polarization functions (DZVP) were used for the LSD calculations. The LSD calculations were performed with the LSD exchange functional (Dirac) and with the Vosko, Wilk, and Nusair correlation energy functional (VWN). Nonlocal spin-density corrections (NLSD) were estimated with the exchange functional of Becke and the correlation energy functional of Perdew (VWN + BP) and Becke, and the correlation energy functional of Lee, Yang, and Parr (B-LYP). Vibrational frequencies were computed at the VWN and B-LYP levels by numerical differentiation of the analytical first derivatives of the energy. Each of these reactions was examined using Hartree-Fock and Møller-Plesset perturbation theory for comparison. Geometry optimizations were carried out at the Hartree-Fock level with the 6-311G(d,p) basis set, and correlation energies were computed up to the MP4SDTQ/6-311G(d,p) level of theory. For the reactions of fulminic acid plus acetylene, fulminic acid plus ethylene, and nitrone plus ethylene, our best estimated density functional barrier heights are 7.8 ± 1.5, 8.9 ± 0.3, and 11.05 ± 1.9 kcal/mol, respectively. These results are in reasonable agreement with the correlated wave-function calculations and experimental estimates. © 1994 John Wiley & Sons, Inc.
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  • 60
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    International Journal of Quantum Chemistry 49 (1994), S. 549-557 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this work, a way to approximate the correlation energy functional starting from a model correlation factor is shown. The problem is addressed by using formally exact properties of the second-order density matrix and actual values of correlation energies for atoms. An Ansatz for the correlation factor is proposed that allows one to derive some known and some new correlation energy density functionals. Results for atomic systems show the reliability of the approach. © 1994 John Wiley & Sons, Inc.
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  • 61
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    International Journal of Quantum Chemistry 49 (1994) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 62
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    International Journal of Quantum Chemistry 49 (1994), S. 575-579 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An analysis is presented of the results of earlier ab initio computational studies of cyclobutadiene, cyclooctatetraene, and 1,4-dihydropyrazine. The first and third of these are normally categorized as antiaromatic. All three molecules are polyenes, even when the last two are forced into planar conformations. There is no driving force for extensive π delocalization, even when it would appear to have been facilitated. Calculated isodesmic energies show a net destabilization only in the case of cyclobutadiene, which we attribute to strain and repulsion between the π electrons of the C=C double bonds. The other two molecules have negative isodesmic energies, indicative of net stabilizing effects. We conclude that the concept of antiaromaticity is useful for identifying molecules that resist the apparent opportunity for extensive © delocalization, but that it does not intrinsically imply net destabilization. © 1994 John Wiley & Sons, Inc.
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  • 63
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    International Journal of Quantum Chemistry 49 (1994), S. 559-573 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Use of orthogonalized Hartree product (OHP) orbitals as the reference orbitals in coupled-cluster (cc) calculations is presented. Since such orbitals are determined without exchange, they provide as “classical” a description as possible. The OHP orbitals were generated by implementing Harris's formulation of the original Hartree method. Some computational considerations of the formulation are discussed. A critical evaluation of the OHP method as an orbital localization scheme is presented. The OHP orbitals were used as the reference in CCD and CCSD calculations and compared with corresponding Hartree-Fock (HF) reference CC results. The average variation of localized Hartree product (LHP) reference CCSD energy from that of the HF reference is 0.83 kcal/mol, whereas for CCD, the average variation is 234 kcal/mol, indicating the importance of single-excitation effects in CC calculations with non-HF references. © 1994 John Wiley & Sons, Inc.
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  • 64
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    International Journal of Quantum Chemistry 52 (1994), S. 195-203 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A series of complete coupled-cluster singles, doubles, and triples (CCSDT) calculations have been performed with Hartree-Fock (HF) and Brueckner (B) orbitals. Calculations have been performed with a double-zeta plus polarization basis set on the H2O, SiH2, NH2, BeO, C2, CN+, and BN molecules. Calculations on H2O and SiH2 at equilibrium and stretched geometries show negligible difference between HF-and B-CCSDT energies. This is also true for NH2, except when the bonds have been stretched to twice their equilibrium values, at which point there is about a 2.5 milli-Hartree (mEh) difference. Calculations on the isoelectronic systems BeO, C2, CN+, and BN were performed at equilibrium geometries. Even though these systems have large T1 amplitudes, the difference between HF- and B-CCSDT energies is only about 1 mEh. For the CCSD method and the CCSD(T) method, which includes triple excitations in an approximate, noniterative manner, however, somewhat larger differences are observed between and HF-and B-CC results. Finally, some properties of BN were computed using HF- and B-CC methods. There are quite small differences between the HF- and B-CCSDT results, but significantly larger ones for the more approximate CCSD and CCSD(T) methods. For this difficult system, where the CCSD(T) approximation seems to be inadequate for HF orbitals, the use of Brueckner orbitals improves the agreement of CCSD(T) with CCSD(T) substantially for re and we, although the difference for μ is unaffected. © 1994 John Wiley & Sons, Inc.
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  • 65
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    International Journal of Quantum Chemistry 52 (1994), S. 181-194 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computational study, using relativistic effective core potentials, is presented of transition metalmain group multiply bonded complexes, of interest in the context of catalysis and chemical vapor deposition of TM/MG materials. Model d0 transition metal complexes chosen are of the general form ClnME where M = Zr (n = 2), Ta (n = 3), and W (n = 4). Main group elements of interest are the tetrels (E = C, Si, Ge, Sn), pnictogens (E = N, P, As, Sb), and chalcogens (E = O, S, Se, Te). A comparison between calculated metric data and available experimental data for a wide range of TM = MG complexes will help in further assessing efficient computational approaches to TM complexes, particularly of the heavier MG elements, as a function of metal, ligand and level of theory. In the present work restricted Hartree Fock (RHF) and Møller-Plesset second order perturbation theory (MP2) wavefunctions were employed. In most cases there are small differences between RHF and MP2 calculated geometries, with both methods showing good agreement with experimental data, suggesting these approaches will be suitable for the study of larger, more experimentally relevant models. Changes in ZrE bond lengths for E = chalcogen (upon going from RHF to MP2) suggest a fundamentally different description between the Zr-oxo bond and heavier chalcogens, a result supported by recent experimental data for a series of Zr-chalcogenidos. To date no examples have been reported of arsinidene and stibinidene complexes. Computational results show similar behavior among the heavier pnictogen complexes, i.e., LnM = EH (E = P, As, Sb), suggesting that strategies used to synthesize phosphinidenes may be suitable in the search for the first LnM = AsR and LnM = SbR complexes. Additionally, calculations suggest that design of ligand sets which yield linearly coordinated phosphinidenes (and presumably As and Sb analogues) will lead to phosphinidenes with stronger metal-pnictogen bonds and increased thermodynamic stability versus nonlinearly coordinated examples. © 1994 John Wiley & Sons, Inc.
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  • 66
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    International Journal of Quantum Chemistry 52 (1994), S. 205-214 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Relativistic pair correlation energies of Xe were computed by employing a recently developed relativistic coupled cluster theory based on the no-pair Dirac-Coulomb-Breit Hamiltonian. The matrix Dirac-Fock-Breit SCF and relativistic coupled cluster calculations were performed by means of expansion in basis sets of well-tempered Gaussian spinors. A detailed study of the pair correlation energies in Xe is performed, in order to investigate the effects of the low-frequency Breit interaction on the correlation energies of Xe. Nonadditivity of correlation and relativistic (particularly Breit) effects is discussed. © 1994 John Wiley & Sons, Inc.
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  • 67
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    International Journal of Quantum Chemistry 52 (1994), S. 215-226 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Topological properties of the charge density \documentclass{article}\pagestyle{empty}\begin{document}$ \rho (\vec r) $\end{document} of a series of diatomic molecules, as well as ethane, ethene, and acetylene are calculated at the Hartree-Fock level employing various basis sets, and by the AM1 method. The effect of the core orbitals on the bonding regions in these molecules is examined. The results help to evaluate the utility of AM1 wavefunctions for analyzing the topological properties of the charge density. © 1994 John Wiley & Sons, Inc.
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  • 68
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    International Journal of Quantum Chemistry 51 (1994), S. 343-344 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 69
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    International Journal of Quantum Chemistry 51 (1994), S. 397-405 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Slater-type orbitals (STOs) with a single-exponent by shell or by subshell have been constructed to reduce the number of integrals evaluated in the electronic calculations. The expansion of orbitals in these new basis sets has been carried out in detail for the ground state of the Ne atom. We have carried out a study of STO basis sets with a different size for this atom that could help to propose empirical rules for the selection of these basis sets for other atoms. The usefulness of STOs with single-exponent by shell and subshell and the splitting of s and p functions are discussed. © 1994 John Wiley & Sons, Inc.
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  • 70
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    International Journal of Quantum Chemistry 51 (1994), S. 407-415 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An application of symplectic implicit Runge-Kutta (RK) integration schemes, the s-stage Gauss-Legendre Runge-Kutta (GLRK) methods of order 2s, for the numerical solution of molecular dynamics (MD) equation is described. The two-stage fourth-order GLRK method, the implicit midpoint rule, and the three-stage diagonally implicit RK method of order four are studied. The fixed-point iteraction was used for solving the resulting nonlinear system of equations. The algorithms were applied to a complex system of N particles interacting through a Lennard-Jones potential. The proposed symplectic methods for MD integration permit a wide range of time steps, are highly accurate and stable, and are thus suitable for the MD integration. © 1994 John Wiley & Sons, Inc.
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  • 71
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    International Journal of Quantum Chemistry 51 (1994), S. 425-437 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rapidly developing field of statistical theory of spectra of many-electron systems is briefly reviewed. In particular, new formal developments, their implementations in studying general properties of the model spaces, and links to the reduction problem are addressed. Applications in molecular and atomic spectroscopy are also discussed. © 1994 John Wiley & Sons, Inc.
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  • 72
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    International Journal of Quantum Chemistry 51 (1994), S. 447-463 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The convergence properties of the expansions of (a) the function 1/r and (b) the function exp(-αr) in an even-tempered basis of Gaussians are studied analytically. The starting points are the Gaussian integral representations of 1/r and exp(-αr). One arrives at an expansion in a finite number of Gaussians in three steps: (1) a restriction of the integration domain, (2) a variable transformation, and (3) discretization of the integral. The cutoff error goes in both cases essentially as exp(-ah), and the discretization error, as exp(-b/h). The minimum overall error is reached for the β-parameter of an even-tempered basis β ∽ exp(c/√n), where n is the dimension of the basis, and the error itself decreases as ∊ ∽ exp(-d√n). Different optimum basis parameters are obtained depending on which quantity one wants to minimize, e.g., the error of the energy expectation value, the distance in Hilbert space, the variance of the energy, or the density at the nucleus. © 1994 John Wiley & Sons, Inc.
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  • 73
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    International Journal of Quantum Chemistry 51 (1994), S. 473-485 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum Chemistry can today boast the fact that ordinary chemists - by means of personal computers and programs available - can study many theoretical properties of molecules by solving the Schrödinger equation and get an advance idea of how to properly arrange their experiments to find new features. For small molecules, they can use ab initio programs of the Hartree-Fock type, and for large molecules, they can use semiempirical programs available. To achieve higher accuracy and to include electron correlation properly, however, one has in the ab initio approach to use configurational interaction methods and giant computers, whereas in the semiempirical methods, the effect of correlating is often taken into account in the adjustable parameters forming the basis for this approach. In connection with the ab initio methods, it is further emphasized that the resolvent methods combined with the partitioning technique provide an excellent conceptual and mathematical framework for getting solutions of any accuracy desired, but that most of the programming of this approach remains to be done. Ordinary wave mechanics is valid at absolute zero of temperature, and - in order to include such important chemical concepts as temperature, entropy, free energy, etc. - one has to go over to general quantum theory and the Liouvillian formalism. One can stil start from the Coulombic Hamiltonian, but it becomes of importance to include the nuclear motion properly and preferably on the same level as that of the electronic motion. It is further emphasized that the irreversibility problem is not yet fully solved, that the theory of the interaction between matter and electromagnetic fields still needs some improvements, and that the question of the proper introduction of relativistic corrections in the quantum theoretical treatment of molecular systems involving heavier atoms still has a great deal to desire. © 1994 John Wiley & Sons, Inc.
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  • 74
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A microscopic formulation of solution chemical reactions, taking reactants and medium structures into consideration, is presented on the basis of microscopic understandings obtained by recent quantum chemical methods (i.e., ab initio molecular orbital theory, etc.). Assuming thermal equilibrium of the medium bath, an effective internal Hamiltonian is derived, and, further, its derivative with respect to internal normal coordinates is proved explicitly to give the same force field as is provided by the free-energy surface or potential of mean force. The free-energy surface can be expressed in the composite normal coordinate system (CNCS) consisting of some normal coordinate systems of isolated reactants and surrounding solvent molecules (i.e., medium solvent molecules). In CNCS, in use of diagonal elements obtained in the Hessian matrix of the free-energy surface, effective normal-mode frequencies, which reflect the equilibrium solvent effect, are estimated. Furthermore, on the generalized Langevin equation (GLE) treatment, a closed expression of the time-dependent frictional coefficient is derived on a microscopic basis, reflecting the reactant and solvent structures. The nonequilibrium effect is estimated by an analytical expression similar to that in the Grote-Hynes theory. The rate constant is evaluated for a typical model system and it is shown that the equilibrium rate constants should be reduced by a factor 0.997. Finally, it is concluded that the present microscopic theory is reasonably applicable to the estimation of chemical reaction rate constants in solution. © 1994 John Wiley & Sons, Inc.
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  • 75
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A number of physical processes, such as autoionization, predissociation, ac- or dc-field-induced ionization, multiphoton dissociation, or chemical transformations, can be formulated as problems involving a nonstationary state satisfying a time-independent complex eigenvalue Schrödinger equation (CESE). The CESE gives rise to all the conceptual and practical difficulties associated with the polyelectronic structures of excited states, as well as novel ones due to the presence of external fields and to the physical significance of the continuous spectrum. In a series of articles from this institute, it has been shown how advanced electronic structure theory and methods suitable for excited states can be integrated in a practical way into selected elements of the rigorous theory of discrete states interacting with the continous spectrum in order to solve the CESE nonperturbatively and efficiently and compute properties such as positions and widths of inner hole or multiply excited states, multiphoton ionization rates, multichannel predissociation lifetimes, nonlinear static and frequency-dependent polarizabilities, and tunneling rates. The present article constitutes a review of the basic features of this theory and its computational methods. © 1994 John Wiley & Sons, Inc.
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  • 76
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    International Journal of Quantum Chemistry 52 (1994) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 77
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    International Journal of Quantum Chemistry 51 (1994), S. 569-575 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method for finding the chemical potential for an electronic system with density ρ = Σρi represented within the Kohn-Sham approximation is proposed. To find the chemical potential of the system under consideration, we propose to refer to the definition μ = δE/δρ and to apply the mathematical properties of functional derivatives. Particularly, in the case examined, the result μ = μ(r) ≠ const has been obtained, which may be explained in the framework of the calculus of variation. Taking the limit limr→∞ μ(r) as the best approximation to the proper equilibrium chemical potential of a free atom, one obtains μ = -I, where I denotes first ionization energy. A possibility of further applications of the proposed method in relation to crystalline systems is also discussed. © 1994 John Wiley & Sons, Inc.
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  • 78
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    International Journal of Quantum Chemistry 52 (1994), S. 339-348 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The hydration energies of the proton, hydroxyl ion, and several inorganic ions were calculated using the multicavity self-consistent reaction field (MCa SCRF) method developed for the quantum-mechanical modeling of rotationally or flexible systems in dielectric media. The ionic complexes H3O+(H2O)4, OH-(H2O)4, NH4+(H2O)4, and Hal-(H2O)4, where Hal = F, Cl, or Br, have been studied. Each complex was divided between five spheres, corresponding to the central ion and four water molecules in their first coordination sphere, respectively. Each cavity was surrounded by a polarizable medium with the dielectric permittivity of water at room temperature (80). The ionic hydration energies of ions were divided into specific and nonspecific parts. After accounting for the cavity-formation energy using scaled particle theory, good agreement between the total calculated and experimental hydration energies was obtained for all ions studied. © 1994 John Wiley & Sons, Inc.
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  • 79
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    International Journal of Quantum Chemistry 52 (1994), S. 89-96 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We presnet a theoretical study of the effect of the conjugation length on the electronic properties and second-order molecular polarizabilities β in p-amino-p′-nitrodiphenylacetylene molecules where the number of triple bonds in the conjugated segment varies from 1 to 4. The β values are calculated via an intermediate neglect of differential overlap/single configuration interaction (INDO/SCI) sum-over-states (SOS) approach. We test the convergence of the SOS method and the validity of the two-state model to describe the β response. The results indicate that increasing the conjugation length results in a decrease of the charge transfer within the molecule. The two-state model is shown to break down as the conjugated segment extends to four triple bonds; this is due to the appearance of several low-lying nearly isoenergetic excited states that significantly contribute to the β response. The theoretical results are in excellent agreement with recent experimental data. © 1994 John Wiley & Sons, Inc.
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  • 80
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Based on the generalized relationship for calculating the nuclear spin-spin coupling constants and the correlation of the bond stretching frequencies with the coupling constants, a novel generalized reationship, which includes the contributions of not only the hybrid orbitals, but also the net atomic charges, is introduced for calculation of the bond stretching frequencies and employed to elucidate the C—H stretching frequencies in hydrocarbons and heterosubstituted hydrocarbons on the basis of the MBOHO calculation employing the CNDO/2 approximation. By use of the obtained concrete realtionships, one can get different νCH value for the C—H bonds existing in different chemical environments, which is coincident with chemical intuition. The calculated numerical results show that for hydrocarbons the contribution of the net atomic charges can be neglected, but it is necessary for heterosubstituted hydrocarbons to include the contribution of the net atomic charges to the C—H stretching frequencies. The calculated C—H stretching frequencies are in good ageement with the experimental data, which shows its reasonableness. © 1994 John Wiley & Sons, Inc.
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  • 81
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    International Journal of Quantum Chemistry 52 (1994), S. 135-146 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The so-called shake-up satellites accompanying C1s photoionization in C60 have been studied theoretically by means of INDO/CI. It is found that the lowest shake-up satellites in C60 correspond to global charge-transfer excitions that move charge from the opposite side of the fullerence cage to the core-hole region, whereas higher-energy satellites tend to move charge from regions nearer to the core hole. Analogies are drawn, with, on the one hand, smaller model molecules such as napthalene and acenaphtylene and, on the other hand, infinite systems such as graphite. © 1994 John Wiley & Sons, Inc.
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  • 82
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    International Journal of Quantum Chemistry 52 (1994), S. 165-175 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A Hamiltonian model to describe molecular vibrations of triatomic molecules is proposed. The Hamiltonian is based on the use of the Kratzer potential variable for the stretching motions and a perturbed Poschl Teller potential for the bending one. The perturbation and variational treatments to compute the vibrational energies of this Hamiltonian can be developed using a zero-order system that includes part of the couplings between the stretching and bending motions. All the matrix elements involved in these calclations can be then evaluated in closed form. A numerical application to the HCN molecule is made. © 1994 John Wiley & Sons, Inc.
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  • 83
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    International Journal of Quantum Chemistry 52 (1994), S. 247-265 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Electron density theory is first employed to express the potential energy curve of the H2+ molecular ion in terms of bond midpoint properties. For heavy homonuclear diatomics, low-ordr density gradient theory is used, but now for the chemical potential, with a similar conclusion to that for H2+. Homonuclear clusters of alkali atoms are then treated in some detail. Finally the dissociation of doubly charged clusters is considered, by a study of supermolecular treated in some detail. Finally the dissociation of doubly charged clusters is considered, by a study of supermolecular ions (Na20+)2 and (K20+)2, again using a density gradient expansion in low order. The deviation between the barrier for fission and the Coulomb barrier is linear in the bond midpoint density over a substantial range of fragment separation. © 1994 John Wiley & Sons, Inc.
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  • 84
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    International Journal of Quantum Chemistry 52 (1994), S. 211-225 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Coupled-cluster (CC) methods at the level of CCSD, CCSD+T(CCSD), CCSD(T), CCSDT-1, and CCSDT-3 are applied to calculations of the dipole moment and polarizability of the CN molecule, ionization potentials and electron affinities of the oxygen and iron atoms and CN molecule, and the energy splitting of the 5D and 5F states of the iron atom. Both UHF and ROHF references are applied. Extended basis sets are used in some comparison of CC data to experiment. All calculated atomic and molecular properties are known as challenging problems, suitable for a careful analysis of the performance of sophisticated versions of the CC approach. Attention is paid to energy terms distinguishing CCSD(T) from CCSD+T(CCSD). We exploit results from various iterative and noniterative high-level CC methods in the assessment of error bars in calculations of atomic and molecular properties. © 1994 John Wiley & Sons, Inc.
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  • 85
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    International Journal of Quantum Chemistry 52 (1994), S. 481-500 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We report some of our recent results from theoretical modeling of the interaction between metals and π-conjugated molecules. We apply the semiempirical Austin Model 1 method for the investigation of two fundamentally different systems: sodium interacting with diphenylpolyenes and aluminum interacting with poly (p-phenylenevinylene) and derivatives. In the former case, electronic-structure calculations are also performed using the nonempirical pseudopotential Valence Effective Hamiltonian (VEH) technique. For sodium interacting with diphenylpolyenes, we investigate the geometric and electronic structure modifications that are induced upon charge transfer in a series of diphenylpolyenes with an even number of carbons (from stilbene to α,ω-diphenyltetradecaheptaene, i.e., one to seven double bonds in the polyene part of the molecule). Densities of valence states generated from the VEH calculations are directly compared to experimental ultraviolet photoelectron spectroscopy valence band spectra; these are recorded during successive sodium exposure of the molecular solids. The charge-storage states in the series are discussed in terms of soliton-antisoliton-pairs and polaron-like states induced upon doping (reduction). Introducing aluminum atoms onto poly (p-phenylenevinylene) systems allows us to study the initial stages of interface formation. We find that aluminum atoms preferentially react with the vinylene linkages in both poly (p-phenylenevinylene) and poly (2,5-dimethoxy-p-phenylenevinylene). When carbonyl groups appear on the side of the chains, as in poly (2,5-dialdehyde-p-phenylenevinylene), new reactive sites are induced, leading to structures with stabilities comparable to those in the most stable configurations involving a single vinylene group. In all three systems investigated, the interaction with aluminum induces major modifications of the polymer chains with interruptions of the π-system caused by formation of sp3-like defects. © 1994 John Wiley & Sons, Inc.
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  • 86
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    International Journal of Quantum Chemistry 52 (1994), S. 553-563 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy surfaces of Mn+/SCN- and Mn+/OCN- (M = Li+ and Mg2+) ion pairs have been calculated at the Hartree-Fock and MP2 levels of theory. The electrostatic potential and the actual binding energies are compared. Besides linear ion pairs, nonlinear ones are also found and are in some cases the most stable ones. The electrostatic potential and the actual binding to cations are compared. © 1994 John Wiley & Sons, Inc.
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  • 87
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    International Journal of Quantum Chemistry 52 (1994), S. 541-551 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The minimum-energy structures and bonding properties of the hydrogenated lithium clusters, Li4H2 and Li7H, have been investigated by means of an ab initio Monte Carlo simulated annealing method. The minimum-energy structures of Li4H2 and Li7H are found to resemble those of the triangular planar (D3h) isomer of Li6 and Td isomer of Li8 clusters, respectively. © 1994 John Wiley & Sons, Inc.
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  • 88
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    International Journal of Quantum Chemistry 52 (1994), S. 329-337 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The full-optimized-APSG approach based on the MC SCF technique is developed and applied to study ground-state properties of one-dimensional correlated systems. The effects of electron-electron interactions and bond relaxation are considered for the conjugated diatomic polymer; charge distribution and bond relaxation are calculated for the N = 50 chain within a wide range of site energy and e-e integral modulation involving the case of alternancy symmetry for diatomic systems. With relation to the results obtained, the problem of the neutral-ionic transition in mixed-stack crystals is discussed. © 1994 John Wiley & Sons, Inc.
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  • 89
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The basic concepts of fractal geometry are reviewed and applied to quasi-two-dimensional zinc electrodeposits. Among the different structures developed during zinc electrodeposition, we have identified the open texture (obtained at large zinc sulfate concentration and small applied potential values) as a typical fractal self-similar structure. © 1994 John Wiley & Sons, Inc.
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  • 90
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    International Journal of Quantum Chemistry 52 (1994), S. 465-478 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Results of density functional calculations will be reported on a variety of hydrogen-bonded complexes, ranging from weak to strong hydrogen bonds. The charged bimolecular NH3—NH4+ complex and the dimers of water and methanol were investigated using a local approximation of the exchange-correlation potential and two different nonlocal potentials with gradient corrections. In the case of the water dimers, the dependence of the results on the extension of the atomic basis set has also been investigated. The equilibrium structures of all complexes have been determined. Dipole moments, hydrogen-bond lengths, and hydrogen-bonding energies, calculated with corrections for the basis-set superposition error using the counterpoise method, have been found to agree well with the corresponding experimental results. © 1994 John Wiley & Sons, Inc.
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  • 91
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    International Journal of Quantum Chemistry 52 (1994), S. 457-463 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Although several authors proposed the existence of long-range correlations in DNA sequences [W. Li and K. Kaneko, Europhys. Lett. 17, 655 (1992); R.F. Voss, Phys. Rev. Lett. 68, 3805 (1992); C.-K. Peng et al., Nature 356, 168 (1992)], we claim that the real character of the correlations remains uncertain. To corroborate long-range correlations, one should prove that the correlation functions decay as an inverse power of the distance between the nucleotides in the DNA sequence. Instead of a direct calculation of the correlation functions, one can calculate either the Fourier transforms of the sequences or the characteristics of “DNA walk.” In our previous work we pointed out that the character of the results depends upon the way the DNA sequences are chosen. When looking for the correlations separately in introns and separately in exons, we found that the resulting correlations are short range. In this work, we discuss the numerical aspects of two computational approaches: the calculation of correlation function and the evaluation of “DNA walk” characteristics. We present the analytic results for the case of exponential correlations. © 1994 John Wiley & Sons, Inc.
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  • 92
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    International Journal of Quantum Chemistry 52 (1994), S. 491-506 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum chemical calculations for two different kinds of native proteins (pig insulin and hen egg white lysozyme) were done by the extended negative factor counting method in which the matrix elements have been calculated at the ab initio level with the help of a minimal basis and the simulation of the aqueous solution environment. The hopping conductivities were worked out by the formulas of the random walk theory of Lax and co-workers. The electronic density of states of these native proteins confirmed the conclusions obtained previously from aperiodic model peptides chains. The results show that the ac conductivity vs. frequency curve of these native proteins lies in the range of some typical good inorganic amorphous conductors and thus confirm that proteins, if doped, are amorphous conductors. The behavior of the ac conductivities of the proteins in different ranges of frequencies are discussed. © 1994 John Wiley & Sons, Inc.
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  • 93
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    International Journal of Quantum Chemistry 52 (1994), S. 625-632 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We test an exchange-correlation functional with explicit dependence on kinetic-energy density as well as the density, its gradient, and its Laplacian, on the Gaussian-2 thermochemical data base. With a small degree of exact-exchange mixing, we find average errors with respect to experiment of order 2 kcal/mol, 0.15 eV, and 2 kcal/mol, respectively, for atomization energies, ionization potentials, and proton affinities. © 1994 John Wiley & Sons, Inc.
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  • 94
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    International Journal of Quantum Chemistry 52 (1994), S. 633-644 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Density-Functional method, with Linear Combination of Atomic Orbitals, has been applied to eight crystals: the lattice equilibrium parameters, and the lattice formation energies have been calculated at the Hartree-Fock level (HF), at the hybrid Hartree-Fock Density-Functional level (DFT/HF), and at the Kohn-Sham Density-Functional level (DFT). The band structures and the electronic charge distributions calculated at the DFT and HF levels are compared. © 1994 John Wiley & Sons, Inc.
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  • 95
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    International Journal of Quantum Chemistry 52 (1994), S. 767-797 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We obtain an analytic expression for the total energy of a metallic cluster formed by N atoms of valence v and with net charge Q, by solving variationally the extended Thomas-Fermi version of density functional theory within the spherical jellium model. The energy is expressed as an expansion (mass formula) in decreasing powers of the cluster radius RI = rsZ1/3, with Z = vN, and rs, the one electron radius of the bulk, \documentclass{article}\pagestyle{empty}\begin{document}$$ E\left( {r_s ,Z,Q} \right) = \sum\limits_{n = - 2}^3 {a_n \left( {r_s } \right)Z^{n/3} + Q\sum\limits_{n = 0}^2 {W_n \left( {r_s } \right)Z^{ - n/3} + \frac{1}{2}\frac{{Q2}}{{R_I + d\left( {r_s } \right)}},} } $$\end{document} and the coefficients of this mass formula are functions of rs. Contributions of volume (RI3), surface (RI2), curvature (RI), constant (RI0), (1/RI), and (1/RI2) are clearly separated in the formula. The Chemical potential, work function, electron affinity, and ionization potential are easily obtained for neutral and charged clusters of any electronic density in the metallic range. A general estimation of the critical size for stability against electron detachment of negatively charged clusters is also obtained. The stability of highly charged clusters against fragmentation is also studied. © John Wiley & Sons, Inc.
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  • 96
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    International Journal of Quantum Chemistry 52 (1994), S. 957-961 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The applicability of the local density approximation (LDA) and of corresponding gradient corrections (for the exchange and correlation energy) for the treatment of the hydrogen bond is investigated. As test systems, we consider the water dimer and the H2O…HX complexes (X = F, Cl, Br): Using an LCAO scheme, their equilibrium geometries and interaction energies are ćalculated and compared with experimental data and with other calculations. We obtain that the LDA gives the geometries in qualitative agreement with other data, whereas the energies are overestimated. The use of the gradient corrections (GC) according to Becke and Perdew leads to a significant improvement of the geometry, and especially of the interaction energies. The calculations indicate further that LDA + GC should also be able to describe weaker intermolecular interactions than the usual hydrogen bond. Finally, a short discussion of the charge distribution and the dipole moments of the H2O…HX complexes is performed. © 1994 John Wiley & Sons, Inc.
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  • 97
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    The @Anatomical Record 239 (1994), S. 243-254 
    ISSN: 0003-276X
    Keywords: Bone ; Ovariectomy ; Immobilization ; Bone resorption ; Bone formation ; Rats ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: Background: Ovariectomy (OVX) and immobilization (IMM) in rats are useful models of osteopenia, replicating some aspects of osteoporosis in humans. The purpose of this study was to compare changes in cancellous bone after OVX and/or IMM.Methods: Differences in cancellous bone were determined at 6 and 12 weeks after OVX or IMM. Comparisons were also made when rats were ovariectomized or immobilized for 6 weeks and then immobilized (OVX/IMM) and ovariectomized (IMM/OVX), respectively, for 6 more weeks. The femurs were used to determine bone mineral content (BMC) using single photon absorptiometry (SPA) and for scanning electron microscopy (SEM). Tibias were collected for microradiography, image analysis, and histomorphometry of metaphyseal cancellous bone.Results: Six and 12 weeks after OVX, there was less cancellous bone mass, compared with controls, as indicated by SPA, SEM, microradiography, image analyses, and histomorphometry. Bone was lost primarily from the central metaphyseal regions in the OVX animals, whereas the loss occurred throughout the metaphyses in the IMM animals. There were more rodlike bone spicules and fewer platelike trabecule in the OVX and IMM groups compared with controls. Differences in the structural aspects of the cancellous bone, including differences in the types of bone struts and marrow star volumes, indicated less trabecular connectivity and greater trabecular separation in the OVX and IMM animals, compared with controls. Endochondral growth indices in the IMM groups tended to be less, whereas the OVX groups tended to be greater than controls. Cancellous bone formation rates were generally greater in the OVX groups but less in the IMM groups compared with controls. Osteoclastic resorption surfaces were substantially elevated in the IMM and OVX groups, particularly the IMM groups. Changes reflecting OVX and IMM, independently, were apparent in the OVX/IMM and IMM/OVX groups and indices of osteopenia were different from controls, including less bone mass, trabecular connectivity, and greater trabecular separation, bone turnover rates, and osteoclastic surface.Conclusions: These results demonstrate differences in the osteopenic changes that occur in cancellous bone following OVX or IMM. The changes were generally more dramatic in the IMM than in the OVX animals. When OVX and IMM were applied in combination, the osteopenic changes are particularly severe, emphasizing the importance of mechanical usage even with a deficiency of gonadal hormones. © 1994 Wiley-Liss, Inc.
    Additional Material: 6 Ill.
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  • 98
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    The @Anatomical Record 240 (1994), S. 1-18 
    ISSN: 0003-276X
    Keywords: Joint ; Bone ; Cartilage ; Mechanical influences ; Growth ; Osteoarthritis ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: Making a durable joint requires adapting the one present at birth to its subsequent mechanical usage and then maintaining it. The total loads on a joint's momentarily loaded area plus the size of that area determine the unit loads on its articular cartilage and subchondral bone. Given those facts, this model suggests the following.For adaptaion: As is true for bone, a threshold range of unit loads that could turn cartilage modeling ON would lie below this tissue's microdamage threshold. When a joint's unit loads rose to that modeling threshold, chondral modeling would begin enlarging the momentarily loaded area to reduce and keep the unit loads on it below the microdamage thresholds of the bone and cartilage supporting that area.For maintenance: Maintenance activities would control the stiffness of cartilage and bone, which would also affect a joint's momentarily loaded area. These activities would usually repair whatever microdamage normally arises in those tissues, and could modify their microdamage thresholds too.In children, modeling and maintenance in bone and cartilage would function effectively. In adults chondral modeling becomes ineffective, but maintenance activities in bone and cartilage would remain effective, and likewise for modeling in the subchondral bone.This model assigns special importance in joint design to the stiffness of bone, cartilage, and ligament (as distinguished from their strength), to the typical largest unit: loads applied to them by a subject's usual weekly physical activities, and to their microdamage. © 1994 Wiley-Liss, Inc.
    Additional Material: 18 Ill.
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  • 99
    ISSN: 1040-452X
    Keywords: FGF ; Receptor ; Brain ; Muscle ; Wound healing ; Skin ; Bone ; Biopolymer ; Heparan-like ; Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: Several heparin-binding growth factors (HBGFs) are thought to play a key role in the natural processes of tissue homeostasis, regeneration or repair. The HBGFs are active upon release from neighbouring inflammatory or circulating cells, as well as upon release from heparan sulfate proteoglycosaminoglycans that are associated with the extracellular matrix (ECM). To better understand the physiological role of these HBGFs, we have focused our effort on studying a subset of HBGFs, namely FGF-1 and FGF-2 and their receptors. We present the purification and characterisation of a new form of heparinbinding FGF receptor from adult bovine brain (Perderiset et al., 1992). This receptor has now been purified to homogeneity. Ligand blot and cross-linking experiments performed with labeled FGF-1 or FGF-2 revealed 80-kd and 130-kd bands. Preliminary sequence information indicates that receptor is different from the receptors, FGFR-1 to -4, but it may be related the cysteine-rich-FGF receptor (CFR).We have previously shown that FGF-1, but not FGF-2, is specifically expressed in myoblastic satellite cells during the proliferating phase preceding myoblast alignment and fusion. We have now transfected primary cultures of rat myoblastic satellite cells with FGF-1 cDNA and expressed this growth factor constitutively. The transfected cells were no longer able to form myotubes. Transfection with antisense FGF-1 induced myotube formation suggesting that endogenous expression of FGF-1 is associated with myoblastic cell differentiation.Numerous studies have concluded that the ECM represents a natural reservoir for various HBGFs. The HBGFs are stored through their interaction with matrix-associated heparan sulfates and can become available for stimulating cell migration, multiplication, and differentiation during tissue repair. In order to better understand how the control of the bioavailability of HBGFs plays a role in wound healing, we have studied the healing effect of various chemically substituted dextrans (CMDBS) selected for their affinity for HBGFs, alone and in association with HBGFs. The CMDBS were obtained by substitution of methyl carboxylic (CM), benzylamide (B), and benzylamine sulfonate (S) groups. We expected that the CMDBS could act in the following ways: (1) to potentiate the biological activity of FGF-1 and FGF-2; (2) to protect FGF-1 and FGF-2 against thermal or pH inactivation; or (3) to protect FGF-1 and FGF-2 against proteolytic degradation (Tardieu et al., 1992). Selected CMDBSs were tested alone in cutaneous and flat bone wound-healing models. Rats were skin punched and skin regeneration was studied by morphometric and histological analysis. The wounds (6-mm diameter) were filled with collagen plaster alone or soaked with CMDBS. The CMDBS in collagen plaster was able to induce a remarkable effect both on the kinetics and on the quality of the restored skin.We have also looked at the effect of CMDBS in the healing of calvarian bone defects. Adult rats were trephined (5-mm diameter) and the healing of their defects was determined after 35 days. Only those treated with CMDBS show appreciable new bone formation. The filling of defects was almost complete, and the response was dose-dependent. Optimal doses were at 50-100 m̈g CMDBS, while at 400 m̈g CMDBS, less bone was formed. Interestingly, when the defect included bone suture, the suture was restored after CMDBS treatment. We have measured by biochemical, immunological, and histological methods the content and distribution of several HBGFs in the granulation tissue formed during healing, in the presence or absence of CMDBS. Our results suggest that the endogenous HBGFs naturally released during the regeneration process could be trapped, protected, and released by CMDBS. In conclusion, biopolymers can be designed to mimic some of the mechanisms regulating the availability of growth factors and so could be used as wound-healing agents. © 1994 Wiley-Liss, Inc.
    Additional Material: 3 Ill.
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  • 100
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 15 (1994), S. 12-22 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The suitability of the two most widely used strategies to compute semiempirical MEPs is examined. For this purpose, MEP minima, electrostatic charges, and dipoles for a large number of molecules were computed at the AM1, MNDO, and PM3 levels using both the NDDO strategy developed by Ferenczy, Reynolds, and Richards and our own quasi-ab initio method. Results demonstrate that the quasi-ab initio is preferred over the NDDO method for the computation of MEP minima. It is also found that the best set of semiempirical charges and dipoles are obtained using either the AM1 NDDO or the MNDO quasi-ab initio methods. In these two cases, the quality of the results is fully comparable with 6-31G* values. © 1994 by John Wiley & Sons, Inc.
    Additional Material: 6 Tab.
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