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  • 1
    Publication Date: 2014-11-10
    Description: Graphs with circular symmetry, called webs, are relevant w.r.t. describing the stable set polytopes of two larger graph classes, quasi-line graphs and claw-free graphs. Providing a decent linear description of the stable set polytopes of claw-free graphs is a long-standing problem. However, even the problem of finding all facets of stable set polytopes of webs is open. So far, it is only known that stable set polytopes of webs with clique number $\leq 3$ have rank facets only while there are examples with clique number $〉4$ having non-rank facets.
    Keywords: ddc:000
    Language: English
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  • 2
    Publication Date: 2014-02-26
    Description: The bio-heat transfer equation is a macroscopic model for describing the heat transfer in microvascular tissue. In [{\sl Deuflhard, Hochmuth 2002}] the authors applied homogenization techniques to derive the bio-heat transfer equation as asymptotic result of boundary value problems which provide a microscopic description for microvascular tissue. Here those results are generalized to a geometrical setting where the regions of blood are allowed to be connected. Moreover, asymptotic corrector results are derived.
    Keywords: ddc:000
    Language: English
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  • 3
    Publication Date: 2014-11-10
    Description: Stable multi-sets are an evident generalization of the well-known stable sets. As integer programs, they constitute a general structure which allows for a wide applicability of the results. Moreover, the study of stable multi-sets provides new insights to well-known properties of stable sets. In this paper, we continue our investigations started in [{\sl Koster and Zymolka 2002}] and present results of three types: on the relation to other combinatorial problems, on the polyhedral structure of the stable multi-set polytope, and on the computational impact of the polyhedral results. First of all, we embed stable multi-sets in a framework of generalized set packing problems and point out several relations. The second part discusses properties of the stable multi-set polytope. We show that the vertices of the linear relaxation are half integer and have a special structure. Moreover, we strengthen the conditions for cycle inequalities to be facet defining, show that the separation problem for these inequalities is polynomial time solvable, and discuss the impact of chords in cycles. The last result allows to interpret cliques as cycles with many chords. The paper is completed with a computational study to the practical importance of the cycle inequalities. The computations show that the performance of state-of-the-art integer programming solvers can be improved significantly by including these inequalities.
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    Language: English
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  • 4
    Publication Date: 2014-02-26
    Description: In this paper, first solutions of the dust moment equations developed in [{\sl Woitke & Helling 2002}] for the description of dust formation and precipitation in brown dwarf and giant gas planet atmospheres are presented. We consider the special case of a static brown dwarf atmosphere, where dust particles continuously nucleate from the gas phase, grow by the accretion of molecules, settle gravitationally and re-evaporate thermally. Applying a kinetic description of the relevant microphysical and chemical processes for TiO$_2$-grains, the model makes predictions about the large-scale stratification of dust in the atmosphere, the depletion of molecules from the gas phase, the supersaturation of the gas in the atmosphere as well as the mean size and the mass fraction of dust grains as function of depth. Our results suggest that the nucleation occu in the upper atmosphere where the gas is cool, strongly depleted, but nevertheless highly supersaturated ($S\!\gg\!1$). These particles settle gravitationally and populate the warmer layers below, where the in-situ formation (nucleation) is ineffective or even not possible. During their descent, the particles grow up to radii $\approx\!0.3\,\mu{\rm m}\,...\,150\,\mu{\rm m}$, depending gas around the cloud base. The particles finally sink into layers which are sufficiently hot to cause their thermal evaporation. Hence, an effective transport mechanism for condensable elements exi considered solid/liquid material. In the stationary case studied here, this downward directed element transport by precipitating dust grains is balanced by an upward directed flux of condensable elements from the deep interior of the star via convective mixing (no dust without mixing). We find a self-regulation mechanism which leads to an approximate phase equilibrium ($S\!\approx\!1$) around the cloud base. The mass fraction of dust present in the atmosphere results be to approximately given by the mass fraction of condensable elements in the gas being mixed up.
    Keywords: ddc:000
    Language: English
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  • 5
    Publication Date: 2020-03-09
    Description: Analysis of phenomena that simultaneously occur on quite different spatial and temporal scales require adaptive, hierarchical schemes to reduce computational and storage demands. For data represented as grid functions, the key are adaptive, hierarchical, time-dependent grids that resolve spatio-temporal details without too much redundancy. Here, so-called AMR grids gain increasing popularity. For visualization and feature identification/tracking, the underlying continuous function has to be faithfully reconstructed by spatial and temporal interpolation. Well designed interpolation methods yield better results and help to reduce the amount of data to be stored. We address the problem of temporal interpolation of AMR grid data, e.g.\ for creation of smooth animations or feature tracking. Intermediate grid hierarchies are generated by merging the cells on all refinement levels that are present in the key frames considered. Utilizing a clustering algorithm a structure of nested grids is induced on the resulting collection of cells. The grid functions are mapped to the intermediate hierarchy, thus allowing application of appropriate interpolation techniques.
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  • 6
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    Publication Date: 2020-03-09
    Description: An improved general-purpose technique for the visualization of symmetric positive definite tensor fields of rank two is described. It is based on a splatting technique that is built from tiny transparent glyph primitives which are capable to incorporate the full directional information content of a tensor. The result is an information-rich image that allows to read off the preferred directions in a tensor field at each point of a three-dimensional volume or two-dimensional surface. It is useful for analyzing slices or volumes of a three-dimensional tensor field and can be overlayed with standard volume rendering or color mapping. The application of the rendering technique is demonstrated on general relativistic data and the diffusion tensor field of a human brain.
    Keywords: ddc:000
    Language: English
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  • 7
    Publication Date: 2014-11-10
    Description: Graphs with circular symmetry, called webs, are relevant for describing the stable set polytopes of two larger graph classes, quasi-line graphs [{\sl Giles and Trotter 1981, Oriolo 2001}] and claw-free graphs [{\sl Galluccio and Sassano 1997, Giles and Trotter 1981}]. Providing a decent linear description of the stable set polytopes of claw-free graphs is a long-standing problem [{\sl Grötschel, Lov\'asz, and Schrijver 1988}]. However, even the problem of finding all facets of stable set polytopes of webs is open. So far, it is only known that stable set polytopes of webs with clique number $\leq 3$ have rank facets only [{\sl Dahl 1999, Trotter 1975}] while there are examples with clique number $\geq 4$ having non-rank facets [{\sl e.g. Liebling et al. 2003, Oriolo 2001, P\^echer and Wagler 2003}]. In this paper, we provide a construction for non-rank facets of stable set polytopes of webs. We use this construction to prove, for several fixed values of $\omega$ including all odd values at least 5, that there are only finitely many webs with clique number $\omega$ whose stable set polytopes admit rank facets only.
    Keywords: ddc:000
    Language: English
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  • 8
    Publication Date: 2020-11-13
    Description: We present an algorithm that constructs parametrizations of boundary and interface surfaces automatically. Starting with high-resolution triangulated surfaces describing the computational domains, we iteratively simplify the surfaces yielding a coarse approximation of the boundaries with the same topological type. While simplifying we construct a function that is defined on the coarse surface and whose image is the original surface. This function allows access to the correct shape and surface normals of the original surface as well as to any kind of data defined on it. Such information can be used by geometric multigrid solvers doing adaptive mesh refinement. Our algorithm runs stable on all types of input surfaces, including those that describe domains consisting of several materials. We have used our method with success in different fields and we discuss examples from structural mechanics and biomechanics.
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  • 9
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    Publication Date: 2020-08-05
    Description: This article investigates a certain class of combinatorial packing problems and some polyhedral relations between such problems and the set packing problem.
    Keywords: ddc:000
    Language: English
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  • 10
    Publication Date: 2014-02-26
    Description: We construct non-constructible simplicial $d$-spheres with $d+10$ vertices and non-constructible, non-realizable simplicial $d$-balls with $d+9$ vertices for $d\geq 3$.
    Keywords: ddc:000
    Language: English
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  • 11
    Publication Date: 2014-11-11
    Description: We consider the problem of designing a network that employs a non-bifurcated shortest path routing protocol. The network's nodes and the set of potential links are given together with a set of forecasted end-to-end traffic demands. All relevant hardware components installable at links or nodes are considered. The goal is to simultaneously choose the network's topology, to decide which hardware components to install on which links and nodes, and to find appropriate routing weights such that the overall network cost is minimized. In this paper, we present a mathematical optimization model for this problem and an algorithmic solution approach based on a Lagrangian relaxation. Computational results achieved with this approach for several real-world network planning problems are reported.
    Keywords: ddc:000
    Language: English
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  • 12
    Publication Date: 2014-02-26
    Description: We investigate the impact of link and path restoration on the cost of telecommunication networks. The surprising result is the following: the cost of an optimal network configuration is almost independent of the restoration concept if (i) the installation of network elements (ADMs, DXCs, or routers) and interface cards, (ii) link capacities, and (iii) working and restoration routings are simultaneously optimized. We present a mixed-integer programming model which integrates all these decisions. Using a branch-and-cut algorithm (with column generation to deal with all potential routing paths), we solve structurally different real-world problem instances and show that the cost of optimal solutions is almost independent of the used restoration concept. In addition, we optimize spare capacities for given shortest working paths which are predetermined with respect to different link metrics. In comparison to simultaneous optimization of working and restoration routings, it turns out that this approach does not allow to obtain predictably good results.
    Keywords: ddc:000
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  • 13
    Publication Date: 2020-11-13
    Description: In the dial-a-ride-problem (DARP) objects have to be moved between given sources and destinations in a transportation network by means of a server. The goal is to find a shortest transportation for the server. We study the DARP when the underlying transportation network forms a caterpillar. This special case is strongly NP-hard in the worst case. We prove that in a probabilistic setting there exists a polynomial time algorithm which almost surely finds an optimal solution. Moreover, with high probability the optimality of the solution found can be certified efficiently. We also examine the complexity of the DARP in a semi-random setting and in the unweighted case.
    Keywords: ddc:000
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  • 14
    Publication Date: 2019-01-29
    Description: The paper presents a new affine invariant theory on asymptotic mesh independence of Newton's method in nonlinear PDEs. Compared to earlier attempts, the new approach is both much simpler and more natural from the algorithmic point of view. The theory is exemplified at collocation methods for ODE boundary value problems and at finite element methods for elliptic PDE problems.
    Keywords: ddc:000
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  • 15
    Publication Date: 2014-02-26
    Description: In this paper we introduce the notion of smoothed competitive analysis of online algorithms. Smoothed analysis has been proposed by [{\sl Spielman and Teng} STOC 2001] to explain the behaviour of algorithms that work well in practice while performing very poorly from a worst case analysis point of view. We apply this notion to analyze the Multi-Level Feedback (MLF) algorithm to minimize the total flow time on a sequence of jobs released over time when the processing time of a job is only known at time of completion. The initial processing times are integers in the range $[1,2^K]$. We use a partial bit randomization model, where the initial processing times are smoothened by changing the $k$ least significant bits under a quite general class of probability distributions. We show that MLF admits a smoothed competitive ratio of $O(max((2^k/\sigma)^3, (2^k/\sigma)^2 2^K-k))$, where $\sigma$ denotes the standard deviation of the distribution. In particular, we obtain a competitive ratio of $O(2^K-k)$ if $\sigma = \Theta(2^k)$. %The analysis holds for an oblivious as well as for a stronger adaptive %adversary. We also prove an $\Omega(2^{K-k})$ lower bound for any deterministic algorithm that is run on processing times smoothened according to the partial bit randomization model. For various other smoothening models, including the additive symmetric smoothening model used by [{\sl Spielman and Teng}], we give a higher lower bound of $\Omega(2^K)$. A direct consequence of our result is also the first average case analysis of MLF. We show a constant expected ratio of the total flow time of MLF to the optimum under several distributions including the uniform distribution.
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  • 16
    Publication Date: 2014-11-11
    Description: For the general G/G/1 processor sharing (PS) system a sample path result for the sojourn times in a busy period is proved, which yields a relation between the sojourn times under PS and FCFS discipline. In particular, the result provides a formula for the mean sojourn time in G/D/1-PS in terms of the mean sojourn time in the corresponding G/D/1-FCFS, generalizing known results for GI/M/1 and M/GI/1. Extensions of the formula provide the basis for a two-moment approximation of the mean sojourn time in G/GI/1-PS in terms of a related G/D/1-FCFS.
    Keywords: ddc:000
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  • 17
    Publication Date: 2014-02-26
    Description: The paper surveys recent progress in the mathematical modelling and simulation of essential molecular dynamics. Particular emphasis is put on computational drug design wherein time scales of $msec$ up to $min$ play the dominant role. Classical long-term molecular dynamics computations, however, would run into ill-conditioned initial value problems already after time spans of only $psec=10^{-12} sec$. Therefore, in order to obtain results for times of pharmaceutical interest, a combined deterministic-stochastic model is needed. The concept advocated in this paper is the direct identification of metastable conformations together with their life times and their transition patterns. It can be interpreted as a {\em transfer operator} approach corresponding to some underlying hybrid Monte Carlo process, wherein short-term trajectories enter. Once this operator has been discretized, which is a hard problem of its own, a stochastic matrix arises. This matrix is then treated by {\em Perron cluster analysis}, a recently developed cluster analysis method involving the numerical solution of an eigenproblem for a Perron cluster of eigenvalues. In order to avoid the 'curse of dimension', the construction of appropriate boxes for the spatial discretization of the Markov operator requires careful consideration. As a biomolecular example we present a rather recent SARS protease inhibitor.
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  • 18
    Publication Date: 2021-02-01
    Description: The operative planning problem in natural gas distribution networks is addressed. An optimization model focusing on the governing PDE and other nonlinear aspects is presented together with a suitable discretization for transient optimization in large networks by SQP methods. Computational results for a range of related dynamic test problems demonstrate the viability of the approach.
    Keywords: ddc:000
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  • 19
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    Publication Date: 2014-02-26
    Description: This article presents a new computational approach to the three-dimensional (3D) modeling of ribonucleic acid (RNA) sequences with unknown spatial structure. The main concept is a mapping of the query sequence onto the 3D structures of a suitable template RNA molecule. This technique called \textit{threading} has originally been developed for the modeling of protein 3D structures. The application to RNA systems bridges the information gap between the growing mass of RNA sequence data and the relatively limited number of available 3D structures. The new RNA threading method is demonstrated on a tRNA model system because sufficient representative 3D structures have experimentally been elucidated and deposited in the public databases. Nevertheless, the method is in principle transferable on all other RNA species. Algorithms are developed that decompose these template structures into their secondary structure elements and gather this information in a specific template database. The best template is chosen with public alignment and secondary structure prediction tools which are integrated in the RNA modeling module. The structural information gathered from the template and the best alignment is combined to establish a comprehensive 3D model of the query sequence. A range of complete tRNA structures has successfully been modeled with the RNA threading method. The prototype module visualizes the models and provides convenient access to the proposed 3D structures. Therefore, the method could give new insight into a variety of RNA systems which in the recent years have become increasingly important as potential new pharmaceutical agents.
    Keywords: ddc:000
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  • 20
    Publication Date: 2014-02-26
    Description: Collection of abstracts of the Korean-German Bilateral Symposium on Scientific Computing, Berlin January 15/16, 2004
    Keywords: ddc:000
    Language: English
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  • 21
    Publication Date: 2014-11-11
    Description: Beim Entwurf und Ausbau von Informations- und Kommunikationsnetzwerken m{ü}ssen zahlreiche interdependente Entscheidungen getroffen und gleichzeitig mannigfaltige Bedingungen ber{ü}cksichtigt werden. Die verf{ü}gbaren technischen und organisatorischen Alternativm{ö}glichkeiten sind normalerweise so vielf{ä}ltig und komplex, dass eine manuelle Planung praktisch nicht m{ö}glich ist. In diesem Artikel wird das Potential und die Methodik der mathematischen Optimierung bei der kostenoptimalen Planung von Kommunikationsnetzen vorgestellt. Als Ausgangspunkt wird exemplarisch eine typische praktische Aufgabe, die Struktur- und Konfigurationsplanung mehrstufiger Telekommunikationsnetzwerke, dargestellt. Anschließend werden kurz die wesentlichen Modellierungstechniken und Verfahrensans{ä}tze der mathematischen Optimierung skizziert. Abschließend gehen wir auf die Planung einer ad{ä}quaten Informations- und Kommunikations- Infrastruktur f{ü}r ein dezentrales Energieversorgungsnetz ein.
    Keywords: ddc:000
    Language: German
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  • 22
    Publication Date: 2020-08-05
    Description: Point-to-Multipoint systems are one kind of radio systems supplying wireless access to voice/data communication networks. Such systems have to be run using a certain frequency spectrum, which typically causes capacity problems. Hence it is, on the one hand, necessary to reuse frequencies but, on the other hand, no interference must be caused thereby. This leads to the bandwidth allocation problem, a special case of so-called chromatic scheduling problems. Both problems are NP-hard, and there exist no polynomial time approximation algorithms with a guaranteed quality. One kind of algorithms which turned out to be successful for many other combinatorial optimization problems uses cutting plane methods. In order to apply such methods, knowledge on the associated polytopes is required. The present paper contributes to this issue, exploring basic properties of chromatic scheduling polytopes and several classes of facet-defining inequalities.
    Keywords: ddc:000
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  • 23
    Publication Date: 2020-02-11
    Description: The UMTS radio network planning problem poses the challenge of designing a cost-effective network that provides users with sufficient coverage and capacity. We describe an optimization model for this problem that is based on comprehensive planning data of the EU project MOMENTUM. We present heuristic mathematical methods for this realistic model, including computational results.
    Keywords: ddc:000
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  • 24
    Publication Date: 2014-02-26
    Description: Relaying -- allowing multiple wireless hops -- is a protocol extension for cellular networks conceived to improve data throughput. Its benefits have only been quantified for small example networks. For assessing its general potential, we define a complex resource allocation\slash{}scheduling problem. Several mathematical models are presented for this problem; while a time-expanded MIP approach turns out intractable, a sophisticated column generation scheme leads to good computational results. We thereby show that for selected cases relaying can increase data throughput by 30\% on the average.
    Keywords: ddc:000
    Language: English
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  • 25
    Publication Date: 2014-02-26
    Description: Finding conflict-free wavelength assignments with a minimum number of required conversions for a routing of the lightpaths is one of the important tasks within the design of all-optical networks. We consider this problem in multi-fiber networks with different types of WDM systems. We give a detailed description of the problem and derive its theoretical complexity. For practical application, we propose several sequential algorithms to compute appropriate wavelength assignments. We also perform computational experiments to evaluate their performance. For the iterative algorithms, we identify characteristic patterns of progression. Two of these algorithms qualify for application in practice.
    Keywords: ddc:000
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  • 26
    Publication Date: 2014-09-30
    Description: A recently developed algorithm allows Rigid Body Docking of ligands to proteins, regardless of the accessibility and location of the binding site. The Docking procedure is divided into three subsequent optimization phases, two of which utilize rigid body dynamics. The last one is applied with the ligand already positioned inside the binding pocket and accounts for full flexibility. Initially, a combination of geometrical and force-field based methods is used as a Coarse Docking strategy, considering only Lennard-Jones interactions between the target and pharmaceutically relevant atoms or functional groups. The protein is subjected to a Hot Spot Analysis, which reveals points of high affinity in the protein environment towards these groups. The hot spots are distributed into different subsets according to their group affiliation. The ligand is described as a complementary point set, consisting of the same subsets. Both sets are matched in $\mathrm{I\!R}^{3}$, by superimposing members of the same subsets. In the first instance, steric inhibition is nearly neglected, preventing the system's trajectory from trapping in local minima and thus from finding false positive solutions. Hence the exact location of the binding site can be determined fast and reliably without any additional information. Subsequently, errors resulting from approximations are minimized via finetuning, this time considering both Lennard-Jones and Coulomb forces. Finally, the potential energy of the whole complex is minimized. In a first evaluation, results are rated by a reduced scoring function considering only noncovalent interaction energies. Exemplary Screening results will be given for specific ligands.
    Keywords: ddc:000
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  • 27
    Publication Date: 2014-02-26
    Description: We suggest a new model for the design of telecommunication networks which integrates decisions about the topology, configuration of the switching hardware, link dimensioning, and protected routing of communication demands. Applying the branch-and-cut-algorithm implemented in our network planning and optimization tool DISCNET, we demonstrate that real-world based network planning instances of such an enhanced model can be solved.
    Keywords: ddc:000
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  • 28
    Publication Date: 2020-02-11
    Description: Dieser Bericht beschreibt die Erfahrungen und Schlussfolgerungen,die im Rahmen der VDS-Vorstudie bei der Speicherung der vom Friedrich-Althoff-Konsortium lizenzierten Zeitschriften des Kluwer-Verlages gewonnen wurden.
    Keywords: ddc:000
    Language: German
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  • 29
    Publication Date: 2020-11-13
    Description: Der KOBV setzt für die endnutzerbasierte Online-Fernleihe den Sisis ZFL-Server (Zentraler Fernleih-Server) ein. Mit dem Einsatz des ZFL-Servers können in den Bibliotheken echte Rationalisierungseffekte erzielt werden: Der Server ist in der Lage, Fernleih-Bestellungen an lokale Systeme zu übergeben, so dass sie im lokalen System automatisch - ohne Eingreifen von Bibliotheksmitarbeitern - weiterverarbeitet werden können. Im KOBV können derzeit Sisis- und Aleph-Lokalsysteme diese Schnittstelle voll bedienen. Andere Bibliothekssysteme im KOBV, die diese Schnittstelle nicht bedienen können, werden mittels eines E-Mail-Verfahrens in die Online-Fernleihe integriert. Die vorliegende Kurzbeschreibung der Online-Fernleihe im KOBV soll - im Gegensatz zur Spezifikation, die möglichst vollständig sein sollte - einen leicht verständlichen Einblick in die Abläufe der Online-Fernleihe vermitteln. Nach einem Überblick über zu erwartende Rationalisierungseffekte ist der Ablauf einer Online-Fernleih-Bestellung - veranschaulicht durch eine Graphik mit dem technischen Aufbau im KOBV - kurz dargestellt. \vspace{6mm} {\it Hinweis:} Die von einer Arbeitsgruppe des KOBV erstellte Spezifikation zur Online-Fernleihe ist als ZIB Report 02-30 auf dem Preprint-Server des ZIB veröffentlicht. Siehe: Monika Kuberek (Red.) {\begin{rawhtml} 〈a href="http://www.zib.de/Publications/Reports/ZR-02-30.pdf"〉 〈i〉 Spezifikation für eine Verbund-Fernleih-Software im KOBV〈/i〉 〈/a〉 \end{rawhtml}}
    Keywords: ddc:000
    Language: German
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  • 30
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    Publication Date: 2014-02-26
    Description: The problem of clustering data can often be transformed into the problem of finding a hidden block diagonal structure in a stochastic matrix. Deuflhard et al. have proposed an algorithm that state s the number $k$ of clusters and uses the sign structure of $k$ eigenvectors of the stochastic matrix to solve the cluster problem. Recently Weber and Galliat discovered that this system of eigenvectors can easily be transformed into a system of $k$ membership functions or soft characteristic functions describing the clusters. In this article we explain the corresponding cluster algorithm and point out the underlying theory. By means of numerical examples we explain how the grade of membership can be interpreted.
    Keywords: ddc:000
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  • 31
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    Publication Date: 2014-02-26
    Description: Mit der Entwicklung des KOBV-Informationsportals soll den Benutzern in der Region Berlin-Brandenburg ein verbesserter Zugang zu Informationsressourcen geboten werden. Einen wesentlichen Anteil diese Auf der Grundlage der Analyse der Rahmenbedingungen werden Anforderungen an die Zugriffskontrolle im KOBV definiert und Lösungsmöglichkeiten auf der Ebene allgemeiner Modelle diskutiert.
    Keywords: ddc:000
    Language: German
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  • 32
    Publication Date: 2014-02-26
    Description: The KOBV Informationsportal aims to be a universal gateway to the sources of information hosted by the partner libraries from the Berlin-Brandenburg area. Due to the large number of these sources, an intuitive navigation is an essential component of the portal. The navigation-component should preserve the partner libraries? independence and overcome their administrative and technical differences. This paper proposes a collection-level navigation with four dimensions: the sources? subject areas (e.g. the first two levels of DDC), the sources? type (e.g. e-journals, databases, OPACs, etc.), the sources? location (e.g. Berlin, Brandenburg) / the library that hosts that source and the sources? accessing state (e.g. free, restricted, etc.).
    Keywords: ddc:000
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  • 33
    Publication Date: 2014-02-26
    Description: Our main result is that every n-dimensional polytope can be described by at most (2n-1) polynomial inequalities and, moreover, these polynomials can explicitly be constructed. For an n-dimensional pointed polyhedral cone we prove the bound 2n-2 and for arbitrary polyhedra we get a constructible representation by 2n polynomial inequalities.
    Keywords: ddc:000
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  • 34
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    Publication Date: 2020-02-11
    Description: The NETLIB has now served for 18 years as a repository of LP problem instances. From the beginning to the present day there was some uncertainness about the precise values of the optimal solutions. We implemented a program using exact rational arithmetic to compute proofs for the feasibility and optimality of an LP solution. This paper reports the \emph{exact} optimal objective values for all NETLIB problems.
    Keywords: ddc:000
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  • 35
    Publication Date: 2014-02-26
    Description: Based on the knowledge gained from direct numerical simulations which are only possible in the microscale regime, a concept of driven turbulence is presented which allows to enter the mesoscopic scale regime. Here, dust formation under stochastic hydro- and thermodynamic conditions is studied: constructively superimposed stochastic waves initiate dust formation by the creation of singular nucleation events. It, hence, results a varying mean grain size and dust density in space and time. The newly formed dust changes the thermodynamic behavior from almost isotherm to adiabatic and chemically depletes the gas phase.
    Keywords: ddc:000
    Language: English
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  • 36
    Publication Date: 2014-11-11
    Description: Der scharfe Wettbewerb innerhalb der Telekommunikationsbranche zwingt die Netzbetreiber dazu, ihre Investitionen genau zu planen und immer wieder Einsparungsmanahmen durchzuführen. Gleichzeitig ist es jedoch wichtig, die Qualität der angebotenen Dienste zu verbessern, um neue Kunden zu gewinnen und langfristig an sich zu binden. Die mathematische Optimierung bietet sich für viele solcher Aufgabenstellungen als hervorragend geeignetes Planungswerkzeug an. Ziel dieses Artikels ist es, ihre Methodik und ihre Anwendung speziell zur Kosten- und Qualitätsoptimierung in Kommunikationsnetzen vorzustellen. Anhand von vier konkreten Planungsaufgaben aus dem Bereich der Festnetzplanung wird aufgezeigt, wie sich komplexe Zusammenhänge in flexiblen mathematischen Modellen abbilden lassen und welche Verfahren zur automatisierten Bearbeitung der Probleme eingesetzt werden können. Die hier vorgestellten Methoden zeichnen sich insbesondere dadurch aus, dass sie neben hochwertigen Lösungen auch eine Qualittsgarantie liefern, mit der sich die Lsungen fundiert bewerten lassen. Die dokumentierten Ergebnisse aus verschiedenen Industrieprojekten belegen die Eignung und Güte der mathematischen Optimierung für die Praxis.
    Keywords: ddc:000
    Language: German
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  • 37
    Publication Date: 2014-02-26
    Description: Dust formation {in brown dwarf atmospheres} is studied by utilizing a model for driven turbulence in the mesoscopic scale regime. We apply a pseudo-spectral method where waves are created and superimposed {within} a {limited} wavenumber interval. The turbulent kinetic energy distribution follows the Kolmogoroff spectrum which is assumed to be the most likely value. Such superimposed, stochastic waves may occur in a convectively active environment. They cause nucleation fronts and nucleation events and thereby initiate the dust formation process which { continues until} all condensible material is consumed. Small disturbances {are found to} have a large impact on the dust forming system. An initially dust-hostile region, which may originally be optically thin, becomes optically thick in a patchy way showing considerable variations in the dust properties during the formation process. The dust appears in lanes and curls as a result of the interaction with waves, i.e. turbulence, which form larger and larger structures with time. Aiming on a physical understanding of the variability of brown dwarfs, related to structure formation in substellar atmospheres, we work out first necessary criteria for small-scale closure models to be applied in macroscopic simulations of dust forming astrophysical systems.
    Keywords: ddc:000
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  • 38
    Publication Date: 2014-02-26
    Description: Substellar atmospheres are observed to be irregularly variable for which the formation of dust clouds is the most promising candidate explanation. The atmospheric gas is convectively unstable and, last but not least, colliding convective cells are seen as cause for a turbulent fluid field. Since dust formation depends on the local properties of the fluid, turbulence influences the dust formation process and may even allow the dust formation in an initially dust-hostile gas. A regime-wise investigation of dust forming substellar atmospheric situations reveals that the largest scales are determined by the interplay between gravitational settling and convective replenishment which results in a dust-stratified atmosphere. The regime of small scales is determined by the interaction of turbulent fluctuations. Resulting lane-like and curled dust distributions combine to larger and larger structures. We compile necessary criteria for a subgrid model in the frame of large scale simulations as result of our study on small scale turbulence in dust forming gases.
    Keywords: ddc:000
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  • 39
    Publication Date: 2019-01-24
    Description: The solution of scattering problems described by the Helmholtz equation on unbounded domains is of importance for a wide variety of applications, for example in electromagnetics and acoustics. An implementation of a solver for scattering problems based on the programming language Matlab is introduced. The solver relies on the finite-element-method and on the perfectly-matched-layer-method, which allows for the simulation of scattering problems on complex geometries surrounded by inhomogeneous exterior domains. This report gives a number of detailed examples and can be understood as a user manual to the freely accessible code of the solver HelmPole.
    Keywords: ddc:000
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  • 40
    Publication Date: 2020-03-09
    Description: \noindent The size of data sets produced on remote supercomputer facilities frequently exceeds the processing capabilities of local visualization workstations. This phenomenon increasingly limits scientists when analyzing results of large-scale scientific simulations. That problem gets even more prominent in scientific collaborations, spanning large virtual organizations, working on common shared sets of data distributed in Grid environments. In the visualization community, this problem is addressed by distributing the visualization pipeline. In particular, early stages of the pipeline are executed on resources closer to the initial (remote) locations of the data sets. \noindent This paper presents an efficient technique for placing the first two stages of the visualization pipeline (data access and data filter) onto remote resources. This is realized by exploiting the ``extended retrieve'' feature of GridFTP for flexible, high performance access to very large HDF5 files. We reduce the number of network transactions for filtering operations by utilizing a server side data processing plugin, and hence reduce latency overhead compared to GridFTP partial file access. The paper further describes the application of hierarchical rendering techniques on remote uniform data sets, which make use of the remote data filtering stage.
    Keywords: ddc:000
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  • 41
    Publication Date: 2014-02-26
    Description: Relaying is a protocol extension for cellular wireless computer networks; in order to utilize radio resources more efficiently, several hops are allowed within one cell. This paper investigates the principle potential of relaying by casting transmission scheduling as a mathematical optimization problem, namely, a linear program. We analyze the throughput gains showing that, irrespective of the concrete scheduling algorithm, performance gains of up to 30\% on average for concrete example networks are achievable.
    Keywords: ddc:000
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  • 42
    Publication Date: 2014-02-26
    Description: We call an edge $e$ of a perfect graph $G$ critical if $G-e$ is imperfect and call $e$ anticritical if $G+e$ is imperfect. The present paper surveys several questions in this context. We ask in which perfect graphs critical and anticritical edges occur and how to detect such edges. The main result by [{\sl Wagler, PhD thesis 2000}] shows that a graph does not admit any critical edge if and only if it is Meyniel. The goal is to order the edges resp.~non-edges of certain perfect graphs s.t. deleting resp.~adding all edges in this order yields a sequence of perfect graphs only. Results of [{\sl Hayward 1985}] and [{\sl Spinrad & Sritharan 1995}] show the existence of such edge orders for weakly triangulated graphs; the line-perfect graphs are precisely these graphs where all edge orders are perfect [{\sl Wagler 2001}]. Such edge orders cannot exist for every subclass of perfect graphs that contains critically resp.~anticritically perfect graphs where deleting resp.~adding an arbitrary edge yields an imperfect graph. We present several examples and properties of such graphs, discuss constructions and characterizations from [{\sl Wagler 1999, Wagler PhD thesis 2000}]. An application of the concept of critically and anticritically perfect graphs is a result due to [{\sl Hougardy & Wagler 2002}] showing that perfectness is an elusive graph property.
    Keywords: ddc:000
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  • 43
    Publication Date: 2014-02-26
    Description: Hasenbusch has proposed splitting the pseudo-fermionic action into two parts, in order to speed-up Hybrid Monte Carlo simulations of QCD. We have tested a different splitting, also using clover-improved Wilson fermions. An additional speed-up between 5 and 20\% over the original proposal was achieved in production runs.
    Keywords: ddc:000
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  • 44
    Publication Date: 2014-11-10
    Description: A set of vertices $S\subseteq V$ is called a safe separator for treewidth, if $S$ is a separator of $G$, and the treewidth of $G$ equals the maximum of the treewidth over all connected components $W$ of $G-S$ of the graph, obtained by making $S$ a clique in the subgraph of $G$, induced by $W\cup S$. We show that such safe separators are a very powerful tool for preprocessing graphs when we want to compute their treewidth. We give several sufficient conditions for separators to be safe, allowing such separators, if existing, to be found in polynomial time. In particular, every minimal separator of size one or two is safe, every minimal separator of size three that does not split off a component with only one vertex is safe, and every minimal separator that is an almost clique is safe; an almost clique is a set of vertices $W$ such that there is a $v\in W$ with $W-\{v\}$ a clique. We report on experiments that show significant reductions of instance sizes for graphs from proba! bilistic networks and frequency assignment.
    Keywords: ddc:000
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  • 45
    Publication Date: 2019-01-29
    Description: A primal-dual interior point method for optimal control problems is considered. The algorithm is directly applied to the infinite dimensional problem. Existence and convergence of the central path are analyzed, and linear convergence of a short step pathfollowing method is established.
    Keywords: ddc:000
    Language: English
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  • 46
    Publication Date: 2014-02-26
    Description: We explicitly construct small triangulations for a number of well-known $3$-dimensional manifolds and give a brief outline of some aspects of the underlying theory of $3$-manifolds and its historical development.
    Keywords: ddc:000
    Language: English
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  • 47
    Publication Date: 2016-06-30
    Description: Peer-to-Peer (P2P) Systeme werden u.a. zur Verwaltung von großen Datenmengen benutzt, die auf verschiedene Rechner verteilt sind. Benutzern soll damit der Zugriff auf Daten innerhalb des Systems leicht ermöglicht werden. Damit in P2P Systemen die Daten effizient verteilt und gesucht werden können, existieren Distributed Hash Tables. Distributed Hash Tables (DHT) sind eine Methode, um globale Informationen persistent speichern zu können. Der Wertebereich der Hashfunktion, welche die zu veröffentlichenden Einträge auf Werte abbildet, wird in Abschnitte aufgeteilt, die einzelnen Knoten zugeteilt werden. Die meisten DHTs haben aber ein Problem bei der Verteilung der Last. Die verschiedenen DHT Systeme beruhen meist auf einem identischen Ansatz der Lastverteilung. Die Last wird nur mit Hilfe einer Hashfunktion verteilt. Es wird davon ausgegangen, dass diese Funktion die Last gleichmäßig verteilt. Im Rahmen dieser Arbeit wurde ein Verfahren zur Last Verteilung entwickelt, simuliert und implementiert. Bei dem Verfahren wird die Last wie bei der Verteilung von Wärme an die Umgebung abgegeben. Es wird mit existierenden Lastbalancierungsalgorithmen verglichen. Mit diesem neuen Verfahren ist es möglich, Last in DHTs besser zu verteilen ohne große Änderungen an den DHTs vorzunehmen. Es wird gezeigt, wie mit dem Verfahren zusätzlich die Fehlertoleranz des P2P Systems erhöht werden kann.
    Description: One of the many uses of Peer-to-Peer (P2P) systems is the administration of large data sets that are distributed across different computers, with the goal of facilitating user access to files within the system. Distributed Hash Tables (DHT) are designed to enable the efficient distribution and search of files, by allowing global information to be persistently stored. The range of values of the hash function (the possible entries in the published hash table) are assigned to individual nodes. Most DHTs, however, have a problem with load distribution. The various DHT systems usually operate by distributing load equally among nodes. Thus the load is distributed using the help of the hash function. One assumes this function distributes the load evenly. In the context of this work a method of distributing load has been developed, simulated and implemented. With this method load is transferred in a fashion analogous to the dissipation of heat into the environment. Comparisons with existing algorithms for load balancing are drawn. With the new procedure it is possible to better distribute load in DHTs without requiring major changes to the DHTs themselves. It is shown that with the procedure the fault tolerance of P2P systems may also be increased.
    Keywords: ddc:000
    Language: German
    Type: masterthesis , doc-type:masterThesis
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  • 48
    Publication Date: 2014-02-26
    Description: The key to molecular conformation dynamics is the direct identification of metastable conformations, which are almost invariant sets of molecular dynamical systems. Once some reversible Markov operator has been discretized, a generalized symmetric stochastic matrix arises. This matrix can be treated by Perron cluster analysis, a rather recent method involving a Perron cluster eigenproblem. The paper presents an improved Perron cluster analysis algorithm, which is more robust than earlier suggestions. Numerical examples are included.
    Keywords: ddc:000
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  • 49
    Publication Date: 2014-11-11
    Description: In this paper, a new shared protection mechanism for meshed optical networks is presented. Significant network design cost reductions can be achieved in comparison to the well-known 1+1 protection scheme. Demand-wise Shared Protection (DSP) bases on the diversification of demand routings and exploits the network connectivity to restrict the number of backup lightpaths needed to provide the desired level of prorection. Computational experiments approve the benefits of the concept DSP for cost efficient optical network designs.
    Keywords: ddc:000
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  • 50
    Publication Date: 2019-05-10
    Description: The correlation of the inner architecture of bone and its functional loading was already stated by Wolff in 1892. Our objective is to demonstrate this interdependence in the case of the human mandible. For this purpose, stress/strain profiles occuring at a human lateral bite were simulated. Additionally, by a combination of computer graphics modules, a three--dimensional volumetric visualization of bone mineral density could be given. Qualitative correspondences between the density profile of the jaw and the simulated stress/strain profiles could be pointed out. In the long run, this might enable the use of the simulation for diagnosis and prognosis. The solution of the underlying partial differential equations describing linear elastic material behaviour was provided by an adaptive finite element method. Estimates of the discretization errors, local grid refinement, and multilevel techniques guaranteed the reliability and efficiency of the method.
    Keywords: ddc:000
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  • 51
    Publication Date: 2014-02-26
    Description: UMTS is a 3rd generation mobile telecommunication system which enables multi-service and multi-bit rate communication going beyond the possibilities of previous systems. The simulator MoDySim models UMTS in great detail. Characteristics of UMTS such as soft hand-over and the interdependency of load and capacity among neighbouring cells are challenges for the parallelisation of such a system. In this paper we explain how the software was parallelised and present performance results of a UMTS simulation for the city of Berlin.
    Keywords: ddc:000
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  • 52
    Publication Date: 2014-02-26
    Description: We report on a numerical reinvestigation of the Aoki phase in lattice QCD with two flavors of Wilson fermions where the parity-flavor symmetry is spontaneously broken. For this purpose the Hybrid Monte Carlo algorithm was used and an explicit symmetry-breaking source term $h\bar{\psi} i \gamma_{5} \tau^{3}\psi$ was added to the Wilson fermion action. The order parameter $\langle\bar{\psi}i\gamma_{5}\tau^{3}\psi\rangle$ was studied at several values of $(\beta,\kappa,h)$ on lattices of sizes $4^4$ to $12^4$. Our largest lattices can be considered as infintely large allowing to extrapolate to $h=0$. The existence of a parity-flavor-breaking phase can be confirmed at $\beta=4.0$ and $\beta=4.3$ while we find no sign of parity-flavor-breaking at $\beta=4.6$ and $\beta=5.0$.
    Keywords: ddc:000
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  • 53
    Publication Date: 2014-02-26
    Description: In this paper we interpret clustering as a mapping of data into a simplex. If the data itself has simplicial struture this mapping becomes linear. Spectral analysis is an often used tool for clustering data. We will show that corresponding singular vectors or eigenvectors comprise simplicial structure. Therefore they lead to a cluster algorithm, which consists of a simple linear mapping. An example for this kind of algorithms is the Perron cluster analysis (PCCA). We have applied it in practice to identify metastable sets of molecular dynamical systems. In contrast to other algorithms, this kind of approach provides an a priori criterion to determine the number of clusters. In this paper we extend the ideas to more general problems like clustering of bipartite graphs.
    Keywords: ddc:000
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  • 54
    Publication Date: 2016-06-09
    Keywords: ddc:000
    Language: German
    Type: masterthesis , doc-type:masterThesis
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  • 55
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    Publication Date: 2019-10-24
    Keywords: ddc:000
    Language: German
    Type: annualzib , doc-type:report
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  • 56
    Publication Date: 2022-04-11
    Description: The Web of the future will provide a huge amount of information. We need better ways for dealing with and managing the information. A qualified semantic annotation of the information plays a key role for the Web of the future. This article gives an overview about the efforts of the mathematical community to build up a distributed and open information and communication system for mathematics: the Math-Net. The Math-Net Initiative has developed metadata schemas for some classes of Web resources which are relevant in mathematics. Math-Net Services process this information and enable the user to efficiently search and access the information.
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  • 57
    Publication Date: 2022-07-07
    Description: In this paper we propose a new finite element realization of the Perfectly Matched Layer method (PML-method). Our approach allows to deal with arbitrary shaped polygonal domains and with certain types of inhomogeneous exterior domains. Among the covered inhomogeneities are open waveguide structures playing an essential role in integrated optics. We give a detailed insight to implementation aspects. Numerical examples show exponential convergence behavior to the exact solution with the thickness of the PML sponge layer.
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  • 58
    Publication Date: 2014-02-26
    Description: The paper's main result is a simple derivation rule for the Jacobi polynomials with respect to their parameters, i.e. for $\partial_{\alpha} P_n^{\alpha,\beta}$, and $\partial_{\beta} P_n^{\alpha,\beta}$. It is obtained via relations for the Gaussian hypergeometric function concerning parameter derivatives and integer shifts in the first two arguments. These have an interest on their own for further applications to continuous and discrete orthogonal polynomials. The study is motivated by a Galerkin method with moving weight, presents all proofs in detail, and terminates in a brief discussion of the generated polynomials.
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  • 59
    Publication Date: 2014-02-26
    Description: We derive a simple accuracy matching strategy for inexact Gauss Newton methods and apply it to the numerical solution of boundary value problems of ordinary differential equations by collocation. The matching strategy is based on an affine contravariant convergence theorem, i. e. , the characteristic constants are invariant under affine transformations of the domain. The inexact Gauss Newton method is applied to an integral formulation of the BVP. As discretization for the arising linear subproblems we employ adaptive collocation at Gaussian nodes with varying local orders and stepsizes. The grids are chosen via adaptive refinement and order selection.
    Keywords: ddc:000
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  • 60
    Publication Date: 2015-06-01
    Description: In this article we present a method to implement orthogonal polynomials and many other special functions in Computer Algebra systems enabling the user to work with those functions appropriately, and in particular to verify different types of identities for those functions. Some of these identities like differential equations, power series representations, and hypergeometric representations can even dealt with algorithmically, i.\ e.\ they can be computed by the Computer Algebra system, rather than only verified. The types of functions that can be treated by the given technique cover the generalized hypergeometric functions, and therefore most of the special functions that can be found in mathematical dictionaries. The types of identities for which we present verification algorithms cover differential equations, power series representations, identities of the Rodrigues type, hypergeometric representations, and algorithms containing symbolic sums. The current implementations of special functions in existing Computer Algebra systems do not meet these high standards as we shall show in examples. They should be modified, and we show results of our implementations.
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  • 61
    Publication Date: 2014-02-26
    Description: {\newcommand{\R} {{\rm {\mbox{\protect\makebox[.15em][l]{I}R}}}} Given a list of $n$ numbers in $\R $, one wants to decide wether every number in the list occurs at least $k$ times. I will show that $(1-\epsilon)n\log_3(n/k)$ is a lower bound for the depth of a linear decision tree determining this problem. This is done by using the Björner-Lov\'asz method, which turns the problem into one of estimating the Möbius function for a certain partition lattice. I will also calculate the exponential generating function for the Möbius function of a partition poset with restricted block sizes in general.}
    Keywords: ddc:000
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  • 62
    Publication Date: 2014-02-26
    Description: Die Autoren sind sich dar{ü}ber im klaren, daß zahlreiche Imponderabilien die Ergebnisse der vorgelegten Modellrechnungen beeinflussen k{ö}nnen. Immerhin repräsentiert jedoch das vorgelegte mathematische Modell die Summe unserer derzeitigen Kenntnisse zur Fragestellung AIDS--Epidemie; neu hinzukommende Erkenntnisse lassen sich rasch einarbeiten und in ihren Konsequenzen überschauen. Die Entwicklung neuer effizienter numerischer Methoden spielte eine Schlüsselrolle bei der tatsächlichen Simulation dieses umfangreichen realitätsnahen mathematischen Modells.
    Keywords: ddc:000
    Language: German
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  • 63
    Publication Date: 2014-02-26
    Description: We present an adaptive Rothe method for two--dimensional problems combining an embedded Runge--Kutta scheme in time and a multilevel finite element discretization in space. The spatial discretization error is controlled by a posteriori error estimates based on interpolation techniques. A computational example for a thermodiffusive flame propagation model illustrates the high accuracy that is possible with the proposed method.
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  • 64
    Publication Date: 2014-02-26
    Description: The multicommodity linear formulation of the Fixed Charge Network Flow Design problem is known to have significantly sharp linear relaxation lower bounds. However the tradeoff is the introduction of a large amount of artificial variables. We exhibit a class of special instances for which the lower bound is tight. Further we completly describe the polyhedron in the space of the natural variables.
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  • 65
    Publication Date: 2020-03-09
    Description: Die von der DMV-Fachgruppe Scientific Computing in Kooperation mit dem gleichnamigen GAMM-Fachausschuss organisierte Tagung \glqq Scientific Computing in der Theoretischen Physik\grqq~fand vom 16. - 18. März 1994 am Fachbereich Mathematik und Informatik der Freien Universität Berlin statt. Ziel des Workshops war, die Kontakte zwischen den Fachleuten der Gebiete {\em Computational Physics} und {\em Scientific Computing} zu intensivieren. Schwerpunkte des Workshops waren numerische Simulation von Transportmodellen der Astrophysik und Halbleiterphysik, Multilevel-Methoden für partielle Differentialgleichungen sowie Monte-Carlo-Methoden und molekulardynamische Verfahren für Probleme der Statistischen Physik und Quantenfeldtheorie. Der Workshop fand ein äusserst positives Echo und führte über 70 Teilnehmer der verschiedenen Teilgebiete der Theoretischen Physik und ca. 50 Teilnehmer aus dem Bereich der Numerischen Mathematik zusammen. \originalTeX
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  • 66
    Publication Date: 2015-06-01
    Description: We give an overview of an approach on special functions due to Truesdell, and show how it can be used to develop certain type of identities for special functions. Once obtained, these identities may be verified by an independent algorithmic method for which we give some examples.
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  • 67
    Publication Date: 2015-06-01
    Description: {\newcommand{\N} {{\rm {\mbox{\protect\makebox[.15em][l]{I}N}}}} In several publications the first author published an algorithm for the conversion of analytic functions for which derivative rules are given into their representing power series $\sum\limits_{k=0}^{\infty}a_{k}z^{k}$ at the origin and vice versa, implementations of which exist in {\sc Mathematica}, {\sc Maple} and {\sc Reduce}. One main part of this procedure is an algorithm to derive a homogeneous linear differential equation with polynomial coefficients for the given function. We call this type of ordinary differential equations {\sl simple}. Whereas the opposite question to find functions satisfying given differential equations is studied in great detail, our question to find differential equations that are satisfied by given functions seems to be rarely posed. In this paper we consider the family $F$ of functions satisfying a simple differential equation generated by the rational, the algebraic, and certain transcendental functions. It turns out that $F$ forms a linear space of transcendental functions. % with polynomial function coefficients. Further $F$ is closed under multiplication and under the composition with rational functions and rational powers. These results had been published by Stanley who had proved them by theoretical algebraic considerations. In contrast our treatment is purely algorithmically oriented. We present algorithms that generate simple differential equation for $f+g$, $f\cdot g$, $f\circ r$ ($r$ rational), and $f\circ x^{p/q}$ ($p,q\in\N_0$), given simple differential equations for $f$, and $g$, and give a priori estimates for the order of the resulting differential equations. We show that all order estimates are sharp. After finishing this article we realized that in independent work Salvy and Zimmermann published similar algorithms. Our treatment gives a detailed description of those algorithms and their validity.}
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  • 68
    Publication Date: 2020-11-17
    Description: The power of the symbolic math system {\small REDUCE} for solving large and difficult problems in science and engineering is demonstrated by a set of model problems. These include algebraic equation solving, formal variable elimination, formal power series, symbolic treatment of differential equations and applications from theoretical physics.
    Keywords: ddc:000
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  • 69
    Publication Date: 2014-02-26
    Description: Results from finite-element-calculations are usually visualized by colored surface- and contour-line-plots or polygonal patches or simply displaced lines and grids. In computer graphics however more advanced techniques like texture-mapping and NURBS are well established and there exist efficient algorithms and implementations. We show that these techniques are not only easy to use, but form a very natural and far more efficient approach for visualization of higher order finite-element's solutions like in $p$- and $h$-$p$-version. Texture-mapping is useful for displaying vector-valued data, too.
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  • 70
    Publication Date: 2014-02-27
    Description: In Quantum Chemistry the field of Laser--Assisted Molecular Control'' has received a considerable amount of attention recently. One key problem in this new field is the simulation of the dynamical reaction of a molecule subjected to external radiation. This problem is described by the Schrödinger equation, which, after eigenfunction expansion, can be written in the form of a large system of ordinary differential equations, the solutions of which show a highly oscillatory behaviour. The oscillations with high frequencies and small amplitudes confine the stepsizes of any numerical integrator -- an effect, which, in turn, blows up the simulation time. Larger stepsizes can be expected by averaging these fast oscillations, thus smoothing the trajectories. Standard smoothing techniques (averaging, filtering) would kill the whole process and thus, lead to wrong numerical results. To avoid this unwanted effect and nevertheless speed up computations, this paper presents a quasiresonant smoothing algorithm (QRS). In QRS, a natural splitting parameter $\delta$ controls the smoothing properties. An adaptive QRS--version (AQRS) is presented which includes an error estimation scheme for choosing this parameter $\delta$ in order to meet a given accuracy requirement. In AQRS $\delta$ is permanently adapted to the solution properties for computing the chemically necessary information'' only. The performance of AQRS is demonstrated in several test problems from the field Laser--Assisted Selective Excitation of Molecules'' in which the external radiation is a picosecond laser pulse. In comparison with standard methods speedup factors of the order of $10^2$ are observed.
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    Language: English
    Type: doctoralthesis , doc-type:doctoralThesis
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  • 71
    Publication Date: 2015-06-01
    Description: This article describes the REDUCE package ZEILBERG implemented by Gregor Stölting and the author. The REDUCE package ZEILBERG is a careful implementation of the Gosper (The sum package contains also a partial implementation of the Gosper algorithm.) and Zeilberger algorithms for indefinite, and definite summation of hypergeometric terms, respectively. An expression $a_k$ is called a {\sl hypergeometric term} (or {\sl closed form}), if $a_{k}/a_{k-1}$ is a rational function with respect to $k$. Typical hypergeometric terms are ratios of products of powers, factorials, $\Gamma$ function terms, binomial coefficients, and shifted factorials (Pochhammer symbols) that are integer-linear in their arguments.
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  • 72
    Publication Date: 2014-02-26
    Description: We test the performance of the multicanonical approach for biological molecules. The simulated molecules are frustrated systems with a complicated energy landscape. The resulting slowing down in simulations is alleviated by our ansatz. We perform a multicanonical simulation of nonpolar amino acids and study their $\alpha$-helix propensities. The results are shown to be in agreement with recent experimental results.
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  • 73
    Publication Date: 2014-02-26
    Description: In an array of coupled oscillators {\em synchronous chaos} may occur in the sense that all the oscillators behave identically although the corresponding motion is chaotic. When a parameter is varied this fully symmetric dynamical state can lose its stability, and the main purpose of this paper is to investigate which type of dynamical behavior is expected to be observed once the loss of stability has occurred. The essential tool is a classification of Lyapunov exponents based on the symmetry of the underlying problem. This classification is crucial in the derivation of the analytical results but it also allows an efficient computation of the dominant Lyapunov exponent associated with each symmetry type. We show how these dominant exponents determine the stability of invariant sets possessing various instantaneous symmetries and this leads to the idea of {\em symmetry breaking bifurcations of chaotic attractors}. Finally the results and ideas are illustrated for several systems of coupled oscillators.
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  • 74
    Publication Date: 2020-12-15
    Description: We present new Monte Carlo results in non-compact lattice QED with staggered fermions down to $m_0 = 0.005$. This extends our previous investigations on the nature of the continuum limit of QED.
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  • 75
    Publication Date: 2015-06-01
    Description: The celebrated Zeilberger algorithm which finds holonomic recurrence equations for definite sums of hypergeometric terms $F(n,k)$ is extended to certain nonhypergeometric terms. An expression $F(n,k)$ is called hypergeometric term if both $F(n+1,k)/F(n,k)$ and $F(n,k+1)/F(n,k)$ are rational functions. Typical examples are ratios of products of exponentials, factorials, $\Gamma$ function terms, binomial coefficients, and Pochhammer symbols that are integer-linear with respect to $n$ and $k$ in their arguments. We consider the more general case of ratios of products of exponentials, factorials, $\Gamma$ function terms, binomial coefficients, and Pochhammer symbols that are rational-linear with respect to $n$ and $k$ in their arguments, and present an extended version of Zeilberger's algorithm for this case, using an extended version of Gosper's algorithm for indefinite summation. In a similar way the Wilf-Zeilberger method of rational function certification of integer-linear hypergeometric identities is extended to rational-linear hypergeometric identities. The given algorithms on definite summation apply to many cases in the literature to which neither the Zeilberger approach nor the Wilf-Zeilberger method is applicable. Examples of this type are given by theorems of Watson and Whipple, and a large list of identities (``Strange evaluations of hypergeometric series'') that were studied by Gessel and Stanton. It turns out that with our extended algorithms practically all hypergeometric identities in the literature can be verified. Finally we show how the algorithms can be used to generate new identities. REDUCE and MAPLE implementations of the given algorithms can be obtained from the author, many results of which are presented in the paper.
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  • 76
    Publication Date: 2014-02-26
    Description: We present a set of C++ classes that realize an abstract inexact Gauss Newton method in combination with a continuation process for the solution of parameter dependent nonlinear problems. The object oriented approach allows the continuation of different types of solutions within the same framework. \\{\bf Abstract: }We present a set of C++ classes that realize an abstract inexact Gauss Newton method in combination with a continuation process for the solution of parameter dependent nonlinear problems. The object oriented approach allows the continuation of different types of solutions within the same framework.
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  • 77
    Publication Date: 2014-02-26
    Description: We investigate the behavior of randomized simplex algorithms on special linear programs. For this, we develop combinatorial models for the Klee-Minty cubes and similar linear programs with exponential decreasing paths. The analysis of two randomized pivot rules on the Klee-Minty cubes leads to (nearly) quadratic lower bounds for the complexity of linear programming with random pivots. Thus we disprove two bounds conjectured in the literature. At the same time, we establish quadratic upper bounds for random pivots on the linear programs under investigation. This motivates the question whether some randomized pivot rules possibly have quadratic worst-case behavior on general linear programs.
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  • 78
    Publication Date: 2014-02-26
    Description: We consider nested iterations, in which the multigrid method is replaced by some simple basic iteration procedure, and call them {\em cascadic iterations}. They were introduced by Deuflhard, who used the conjugate gradient method as basic iteration (CCG method). He demonstrated by numerical experiments that the CCG method works within a few iterations if the linear systems on coarser triangulations are solved accurately enough. Shaidurov subsequently proved multigrid complexity for the CCG method in the case of $H^2$-regular two-dimensional problems with quasi-uniform triangulations. We show that his result still holds true for a large class of smoothing iterations as basic iteration procedure in the case of two- and three-dimensional $H^{1+\alpha}$-regular problems. Moreover we show how to use cascadic iterations in adaptive codes and give in particular a new termination criterion for the CCG method.
    Keywords: ddc:000
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  • 79
    Publication Date: 2014-02-26
    Description: The results from invariant theory and the results for semi-invariants and equivariants are summarized in a way suitable for the combination with Gröbner basis computation. An algorithm for the determination of fundamental equivariants using projections and a Poincar\'{e} series is described. Secondly, an algorithm is given for the representation of an equivariant in terms of the fundamental equivariants. Several ways for the exact determination of zeros of equivariant systems are discussed
    Keywords: ddc:000
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  • 80
    Publication Date: 2021-03-16
    Description: We investigate the problem of partitioning the nodes of a graph under capacity restriction on the sum of the node weights in each subset of the partition. The objective is to minimize the sum of the costs of the edges between the subsets of the partition. This problem has a variety of applications, for instance in the design of electronic circuits and devices. We present alternative integer programming formulations for this problem and discuss the links between these formulations. Having chosen to work in the space of edges of the multicut, we investigate the convex hull of incidence vectors of feasible multicuts. In particular, several classes of inequalities are introduced, and their strength and robustness are analyzed as various problem parameters change.
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  • 81
    Publication Date: 2021-03-16
    Description: In this paper we consider the problem of $k$-partitioning the nodes of a graph with capacity restrictions on the sum of the node weights in each subset of the partition, and the objective of minimizing the sum of the costs of the edges between the subsets of the partition. Based on a study of valid inequalities, we present a variety of separation heuristics for so-called cycle, cycle with ears, knapsack tree and path-block-cycle inequalities. The separation heuristics, plus primal heuristics, have been implemented in a branch-and-cut routine using a formulation including the edges with nonzero costs and node variables. Results are presented for three classes of problems: equipartitioning problems arising in finite element methods and partitioning problems associated with electronic circuit layout and compiler design.
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  • 82
    Publication Date: 2014-02-26
    Description: {\def\N{{\mbox{{\rm I\kern-0.22emN}}}} Let a set $N$ of items, a capacity $F \in \N$ and weights $a_i \in \N$, $i \in N$ be given. The 0/1 knapsack polytope is the convex hull of all 0/1 vectors that satisfy the inequality $$\sum_{i \in N} a_i x_i \leq F.$$ In this paper we present a linear description of the 0/1 knapsack polytope for the special case where $a_i \in \{\mu,\lambda\}$ for all items $i \in N$ and $1 \leq \mu 〈 \lambda \leq b$ are two natural numbers. The inequalities needed for this description involve elements of the Hilbert basis of a certain cone. The principle of generating inequalities based on elements of a Hilbert basis suggests further extensions.}
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  • 83
    Publication Date: 2014-02-26
    Description: We compare a few variants of the recently proposed multicanonical method with the well known simulated annealing for the effectiveness in search of the energy global minimum of a biomolecular system. For this we study in detail Met-enkephalin, one of the simplest peptides. We show that the new method not only outperforms simulated annealing in the search of the energy groundstate but also provides more statistical-mechanical information about the system.
    Keywords: ddc:000
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  • 84
    Publication Date: 2014-02-26
    Description: We demonstrate the effectiveness of the multicanonical algorithm for the tertiary structure prediction of peptides and proteins. Unlike to simulated annealing the relationship to the canonical ensemble remains exactly controlled. Hence, the new method allows not only the prediction of the lowest-energy conformation, but also the calculation of thermodynamic quantities at various temperature from one run.
    Keywords: ddc:000
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  • 85
    Publication Date: 2014-02-26
    Description: Die enorme algorithmische Beschleunigung durch diskrete Galerkin-Methoden f{ü}r abz{ä}hlbare Differentialgleichungssysteme hat der Simulation von Polymerisationsprozessen neue, industriell relevante Problembereiche er{ö}ffnet, die mit den bis dahin verf{ü}gbaren Methoden nicht zug{ä}nglich waren.
    Keywords: ddc:000
    Language: German
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  • 86
    Publication Date: 2014-02-26
    Description: Large chemical computations show the need for full adaptivity supporting the development of robust and highly efficient programs. For solutions possessing sharp moving spatial transitions, as travelling wavefronts or emerging boundary and internal layers, an automatic adjustment of both the space and the time stepsize is generally accepted to be more successful in efficient resolving critical regions of high spatial and temporal activity. In contrast to the widespread discretization sequence first space then time the reversed sequence first time then space is employed. Full adaptivity of the proposed algorithm is realized by combining embedded time discretization and multilevel finite element space discretization. In this paper the algorithm is described for one--dimensional problems. The numerical results show the significantly new perspectives opened by this approach.
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  • 87
    Publication Date: 2019-05-10
    Description: An error controlled finite elemente method (FEM) for solving stationary Schrödinger equations in three space dimensions is proposed. The method is based on an adaptive space discretization into tetrahedra and local polynomial basis functions of order $p=1$--$5$ defined on these tetrahedra. According to a local error estimator the triangulation is automatically adapted to the solution. Numerical results for standard problems appearing in vibrational motion and molecular structure calculations are presented and discussed. Relative precisions better than 1e-8 are obtained. For equilateral H$_3^{++}$ the adaptive FEM turns out to be superior to global basis set expansions in the literature. Our precise FEM results exclude in a definite manner the stability or metastability of equilateral H$_3^{++}$ in its groundstate.
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  • 88
    Publication Date: 2020-03-09
    Description: {\def\NP{\hbox{$\cal N\kern-.1667em\cal P$}} The {\sl storage assignment problem} asks for the cost minimal assignment of containers with different sizes to storage locations with different capacities. Such problems arise, for instance, in the optimal control of automatic storage devices in flexible manufacturing systems. This problem is known to be $\NP$-hard in the strong sense. We show that the storage assignment problem is $\NP$-hard for {\sl bounded sizes and capacities}, even if the sizes have values $1$ and~$2$ and the capacities value~$2$ only, a case we encountered in practice. Moreover, we prove that no polynomial time $\epsilon$-approximation algorithm exists. This means that almost all storage assignment problems arising in practice are indeed hard.}
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  • 89
    Publication Date: 2014-02-26
    Description: We consider the numerical treatment of Hamiltonian systems that contain a potential which grows large when the system deviates from the equilibrium value of the potential. Such systems arise, e.g., in molecular dynamics simulations and the spatial discretization of Hamiltonian partial differential equations. Since the presence of highly oscillatory terms in the solutions forces any explicit integrator to use very small step-size, the numerical integration of such systems provides a challenging task. It has been suggested before to replace the strong potential by a holonomic constraint that forces the solutions to stay at the equilibrium value of the potential. This approach has, e.g., been successfully applied to the bond stretching in molecular dynamics simulations. In other cases, such as the bond-angle bending, this methods fails due to the introduced rigidity. Here we give a careful analysis of the analytical problem by means of a smoothing operator. This will lead us to the notion of the smoothed dynamics of a highly oscillatory Hamiltonian system. Based on our analysis, we suggest a new constrained formulation that maintains the flexibility of the system while at the same time suppressing the high-frequency components in the solutions and thus allowing for larger time steps. The new constrained formulation is Hamiltonian and can be discretized by the well-known SHAKE method.
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  • 90
    Publication Date: 2014-02-26
    Description: We investigate the generating sets (``Gröbner bases'') of integer lattices which correspond to the Gröbner bases of the associated binomial ideals. Extending results in Sturmfels and Thomas, preprint 1994, we obtain a geometric characterization of the universal Gröbner basis in terms of the vertices and edges of the associated corner polyhedra. We emphasize the special case where the lattice has finite index. In this case the corner polyhedra were studied by Gomory, and there is a close connection to the ``group problem in integer programming'' Schrijver, p.~363. We present exponential lower and upper bounds for the size of a reduced Gröbner basis. The initial complex of (the ideal of) a lattice is shown to be dual to the boundary of a certain simple polyhedron.
    Keywords: ddc:000
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  • 91
    Publication Date: 2014-02-26
    Description: We consider periodic orbits of autonomous parameter dependent ODE's. Starting from a shooting algorithm for the numerical computation of periodic orbits via an adaptive Poincar\'e-section we develop a pathfollowing algorithm for periodic solutions based on a tangential continuation method with implicit reparametrization. For ODE's equivariant w.r.t. a finite group we show that spatial as well as spatio-temporal symmetries of periodic orbits can be exploited within the (multiple) shooting context. We describe how turning points, period doubling bifurcations and Hopf points along the branch of periodic solutions can be handled. Furthermore equivariant Hopf points and generic secondary bifurcations of periodic orbits with $ Z_m$-symmetry are treated. We tested the code with standard examples, e.g., the period doubling cascade in the Lorenz equations. To show the efficiency of the described methods we also used the program for an application from electronics, a ring oscillator with $n $ inverters. In this example the exploitation of symmetry reduces the amount of work for the continuation of periodic orbits from ${\cal O}(n^2)$ to ${\cal O}(n)$
    Keywords: ddc:000
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  • 92
    Publication Date: 2015-06-01
    Description: In this article algorithmic methods are presented that have been incorporated in computer algebra systems in the last five years. The methods can be used to identify transcendental functions. The essential idea due to Zeilberger is to represent the functions by systems of holonomic differential and recurrence equations, and the identification procedure utilizes algorithms of Stanley and Zeilberger. Also a noncommutative version of the Buchberger algorithm can be applied.
    Keywords: ddc:000
    Language: German
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  • 93
    Publication Date: 2014-02-26
    Description: In this paper we modify Buchberger's $S$-pair reduction algorithm for computing a Gröbner basis of a toric ideal so as to apply to an integer program in inequality form with fixed right hand sides and fixed upper bounds on the variables. We formulate the algorithm in the original space and interpret the reduction steps geometrically. In fact, three variants of this algorithm are presented and we give elementary proofs for their correctness. A relationship between these (exact) algorithms, iterative improvement heuristics and the Kernighan-Lin procedure is established.
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  • 94
    Publication Date: 2014-02-26
    Description: Adopting a statistical approach for the computation of turbulent combustion flows an approximation for the probability density function (PDF) of the composition variables is often required to treat the highly non-linear reaction term in a satisfactory way. One class of methods currently being used are the moment methods which employ transport equations for low order statistical moments and use a parametrized shape of the PDF. A second class solves a transport equation for the joint PDF by a Monte Carlo method. In the present paper we develop an intermediate algorithm based on a Galerkin method for the PDF transport equation. The solution is developed in terms of an orthogonal or bi-orthogonal basis of a suitable Hilbert space. The unconventional use of the related weight function as a prefactor (moving weight approach) permits adaptivity and results in a generalization of the $\beta-$closure for bounded scalar quantities. We present the approximation procedure in detail and apply it to the evolution of the composition in a homogeneous well-stirred reactor. The extension to non-homogeneous flow simulations is straightforward.
    Keywords: ddc:000
    Language: English
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  • 95
    Publication Date: 2014-02-26
    Description: Combinatorial optimization problems pervade many areas of human problem solving especially in the fields of business, economics and engineering. Intensive mathematical research and vast increases in raw computing power have advanced the state of the art in exact and heuristic problem solving at a pace that is unprecedented in human history. We survey here in layman's terms some of the fundamental concepts and principles that have led this progress. (This article will appear -- possibly in modified form -- in a popular science magazine.)
    Keywords: ddc:000
    Language: English
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  • 96
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    Publication Date: 2014-02-26
    Description: {\def\N{{\mbox{{\rm I\kern-0.22emN}}}} Given a set $N$ of items and a capacity $b \in \N$, and let $N_j$ be the set of items with weight $j$, $1 \leq j \leq b$. The 0/1 knapsack polytope is the convex hull of all 0/1 vectors that satisfy the inequality $$\sum_{j=1}^b \sum_{i \in N_j} jx_i \leq b.$$ In this paper we first present a complete linear description of the 0/1 knapsack polytope for two special cases: (a) $N_j = \emptyset$ for all $1 〈 j \leq \lfloor {b \over 2} \rfloor$ and (b) $N_j = \emptyset$ for all $1 〈 j \leq \lfloor {b \over 3} \rfloor$ and $N_j = \emptyset$ for all $j \geq \lfloor {b \over 2} \rfloor + 1$. It turns out that the inequalities that are needed for the complete description of these special polytopes are derived by means of some ``reduction principle''. This principle is then generalized to yield valid and in many cases facet defining inequalities for the general 0/1 knapsack polytope. The separation problem for this class of inequalities can be solved in pseudo polynomial time via dynamic programming techniques.}
    Keywords: ddc:000
    Language: English
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  • 97
    Publication Date: 2014-02-26
    Description: In the field of deep regional hyperthermia, one of the most widely used devices is the BSD--2000 Hyperthermia System which employs the Sigma 60 applicator. The Sigma 60 consists of four independent sources, giving it the potential to control the energy pattern within the patient. The independent amplitudes and phases, as well as frequency selection and applicator position, present a large number of parameters for the operator to determine. Computer simulation has long been recognized as an attractive approach to optimizing these parameters. A treatment planning program was used in clinical practice at Stanford University Medical Center for two years. It demonstrated the feasibility of computer simulation for deep regional hyperthermia in a clinical situation. However, several parts of this system were written in a language specific to one workstation, which severely restricted the wider distribution of the program to other users of the Sigma 60. A new treatment planning system for the BSD 2000 has been developed and put into clinical practice at the Rudolf Virchow Clinic of the Free University of Berlin. The new method, which we will refer to as the Berlin system, has a simpler model construction program and a considerably better graphics capability. However, the most important feature is that all programs are written in FORTRAN, C, or the X Window graphics system. Therefore, the entire treatment planning system is completely portable to other workstations.
    Keywords: ddc:000
    Language: English
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  • 98
    Publication Date: 2014-02-26
    Description: In this paper we describe several versions of the routing problem arising in VLSI design and indicate how the Steiner tree packing problem can be used to model these problems mathematically. We focus on switchbox routing problems and provide integer programming formulations for routing in the knock-knee and in the Manhattan model. We give a brief sketch of cutting plane algorithms that we developed and implemented for these two models. We report on computational experiments using standard test instances. Our codes are able to determine optimum solutions in most cases, and in particular, we can show that some of the instances have no feasible solution if Manhattan routing is used instead of knock-knee routing.
    Keywords: ddc:000
    Language: English
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  • 99
    Publication Date: 2014-02-26
    Description: The aim of this paper is to compute all isolated solutions to symmetric polynomial systems. Recently, it has been proved that modelling the sparse structure of the system by its Newton polytopes leads to a computational breakthrough in solving the system. In this paper, it will be shown how the Lifting Algorithm, proposed by Huber and Sturmfels, can be applied to symmetric Newton polytopes. This symmetric version of the Lifting Algorithm enables the efficient construction of the symmetric subdivision, giving rise to a symmetric homotopy, so that only the generating solutions have to be computed. Efficiency is obtained by combination with the product homotopy. Applications illustrate the practical significance of the presented approach.
    Keywords: ddc:000
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  • 100
    Publication Date: 2014-02-26
    Description: In this paper we describe the convex hull of all solutions of the integer bounded knapsack problem in the special case when the weights of the items are divisible. The corresponding inequalities are defined via an inductive scheme that can also be used in a more general setting.
    Keywords: ddc:000
    Language: English
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